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macmanes/gist:f4b70dbdfb658db81582e5bd2cd186cd

Created May 17, 2016 11:50
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gistfile1.txt
java -jar -Xmx600G /share/bin/pilon-1.17.jar --genome jelly.out.fasta \
--frags nygc.mapped.sorted.bam \
--frags hcgs.mapped.sorted.bam \
--output peer_pilon \
--tracks \
--diploid \
--threads 40 \
--verbose
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