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bootstrap_eb.log
[[DEBUG]] Going to use /tmp/tmp3P1tRE as temporary directory
[[DEBUG]] Output from modulecmd python help: sh: modulecmd: command not found
[[DEBUG]] Output from lmod python help: Usage: module [options] sub-command [args ...]
Options:
-h -? -H --help This help message
-s availStyle --style=availStyle Site controlled avail style: system
(default: system)
-D Program tracing written to stderr
--debug=dbglvl Program tracing written to stderr
-d --default List default modules only when used with
avail
-q --quiet Do not print out warnings
--topic=topic help topics: modfuncs envvars
--expert Expert mode
-t --terse Write out in machine readable format for
commands: list, avail, spider, savelist
--initial_load loading Lmod for first time in a user
shell
--latest Load latest (ignore default)
--ignore_cache Treat the cache file(s) as out-of-date
--novice Turn off expert and quiet flag
--raw Print modulefile in raw output when used
with show
-w twidth --width=twidth Use this as max term width
-v --version Print version info and quit
-r --regexp use regular expression match
--gitversion Dump git version in a machine readable
way and quit
--dumpversion Dump version in a machine readable way
and quit
--localvar=localvarA local variables needed to be set after
this commands execution
--check_syntax --checkSyntax Checking module command syntax: do not
load
--config Report Lmod Configuration
--mt Report Module Table State
--timer report run times
--force force removal of a sticky module or save
an empty collection
--redirect Send the output of list, avail, spider
to stdout (not stderr)
--no_redirect Force output of list, avail and spider
to stderr
--show_hidden Avail and spider will report hidden
modules
--spider_timeout=timeout a timeout for spider
module [options] sub-command [args ...]
Help sub-commands:
------------------
help prints this message
help module [...] print help message from module(s)
Loading/Unloading sub-commands:
-------------------------------
load | add module [...] load module(s)
try-load | try-add module [...] Add module(s), do not complain if not
found
del | unload module [...] Remove module(s), do not complain if not
found
swap | sw | switch m1 m2 unload m1 and load m2
purge unload all modules
refresh reload aliases from current list of
modules.
update reload all currently loaded modules.
Listing / Searching sub-commands:
---------------------------------
list List loaded modules
list s1 s2 ... List loaded modules that match the
pattern
avail | av List available modules
avail | av string List available modules that contain
"string".
spider List all possible modules
spider module List all possible version of that module
file
spider string List all module that contain the
"string".
spider name/version Detailed information about that version
of the module.
whatis module Print whatis information about module
keyword | key string Search all name and whatis that contain
"string".
Searching with Lmod:
--------------------
All searching (spider, list, avail, keyword) support regular expressions:
spider -r '^p' Finds all the modules that start with
`p' or `P'
spider -r mpi Finds all modules that have "mpi" in
their name.
spider -r 'mpi$ Finds all modules that end with "mpi" in
their name.
Handling a collection of modules:
--------------------------------
save | s Save the current list of modules to a
user defined "default".
save | s name Save the current list of modules to
"name" collection.
restore | r Restore modules from the user's
"default" or system default.
restore | r name Restore modules from "name" collection.
restore system Restore module state to system defaults.
savelist List of saved collections.
Deprecated commands:
--------------------
reset The same as "restore system"
getdefault [name] load name collection of modules or
user's "default" if no name given.
===> Use "restore" instead <====
setdefault [name] Save current list of modules to name if
given, otherwise save as the default
list for you the user.
===> Use "save" instead. <====
Miscellaneous sub-commands:
---------------------------
show modulefile show the commands in the module file.
use [-a] path Prepend or Append path to MODULEPATH.
unuse path remove path from MODULEPATH.
tablelist output list of active modules as a lua
table.
Important Environment Variables:
--------------------------------
LMOD_COLORIZE If defined to be "YES" then Lmod prints
properties and warning in color.
--------------------------------------------------------------------------
The following guides are at http://www.tacc.utexas.edu/tacc-projects/lmod
User Guide - How to use.
Advance User Guide - How to create you own modules.
System Administrator Guide - How to install Lmod on your own system.
--------------------------------------------------------------------------
Modules based on Lua: Version 5.8.5 (5.8.5-1-g201a61d) 2015-01-23 15:54
by Robert McLay mclay@tacc.utexas.edu
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::";
os.environ["MODULEPATH"] = "/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::";
os.environ["MODULEPATH"] = "/n/local/scbc/inst/modulefiDownloading http://pypi.python.org/packages/source/d/distribute/distribute-0.6.34.tar.gz
Extracting in /tmp/tmptFI4WS
Now working in /tmp/tmptFI4WS/distribute-0.6.34
Installing Distribute
Before install bootstrap.
Scanning installed packages
Setuptools installation detected at /usr/lib/python2.7/site-packages
Not patching, --root or --prefix is installing Distribute in another location
running install
running bdist_egg
running egg_info
writing distribute.egg-info/PKG-INFO
writing top-level names to distribute.egg-info/top_level.txt
writing dependency_links to distribute.egg-info/dependency_links.txt
writing entry points to distribute.egg-info/entry_points.txt
writing distribute.egg-info/PKG-INFO
writing top-level names to distribute.egg-info/top_level.txt
writing dependency_links to distribute.egg-info/dependency_links.txt
writing entry points to distribute.egg-info/entry_points.txt
reading manifest file 'distribute.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
writing manifest file 'distribute.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
copying pkg_resources.py -> build/lib
copying easy_install.py -> build/lib
copying site.py -> build/lib
creating build/lib/setuptools
copying setuptools/archive_util.py -> build/lib/setuptools
copying setuptools/depends.py -> build/lib/setuptools
copying setuptools/dist.py -> build/lib/setuptools
copying setuptools/extension.py -> build/lib/setuptools
copying setuptools/package_index.py -> build/lib/setuptools
copying setuptools/sandbox.py -> build/lib/setuptools
copying setuptools/script template (dev).py -> build/lib/setuptools
copying setuptools/script template.py -> build/lib/setuptools
copying setuptools/__init__.py -> build/lib/setuptools
creating build/lib/_markerlib
copying _markerlib/markers.py -> build/lib/_markerlib
copying _markerlib/__init__.py -> build/lib/_markerlib
creating build/lib/setuptools/command
copying setuptools/command/alias.py -> build/lib/setuptools/command
copying setuptools/command/bdist_egg.py -> build/lib/setuptools/command
copying setuptools/command/bdist_rpm.py -> build/lib/setuptools/command
copying setuptools/command/bdist_wininst.py -> build/lib/setuptools/command
copying setuptools/command/build_ext.py -> build/lib/setuptools/command
copying setuptools/command/build_py.py -> build/lib/setuptools/command
copying setuptools/command/develop.py -> build/lib/setuptools/command
copying setuptools/command/easy_install.py -> build/lib/setuptools/command
copying setuptools/command/egg_info.py -> build/lib/setuptools/command
copying setuptools/command/install.py -> build/lib/setuptools/command
copying setuptools/command/install_egg_info.py -> build/lib/setuptools/command
copying setuptools/command/install_lib.py -> build/lib/setuptools/command
copying setuptools/command/install_scripts.py -> build/lib/setuptools/command
copying setuptools/command/register.py -> build/lib/setuptools/command
copying setuptools/command/rotate.py -> build/lib/setuptools/command
copying setuptools/command/saveopts.py -> build/lib/setuptools/command
copying setuptools/command/sdist.py -> build/lib/setuptools/command
copying setuptools/command/setopt.py -> build/lib/setuptools/command
copying setuptools/command/test.py -> build/lib/setuptools/command
copying setuptools/command/upload.py -> build/lib/setuptools/command
copying setuptools/command/upload_docs.py -> build/lib/setuptools/command
copying setuptools/command/__init__.py -> build/lib/setuptools/command
creating build/lib/setuptools/tests
copying setuptools/tests/doctest.py -> build/lib/setuptools/tests
copying setuptools/tests/py26compat.py -> build/lib/setuptools/tests
copying setuptools/tests/server.py -> build/lib/setuptools/tests
copying setuptools/tests/test_bdist_egg.py -> build/lib/setuptools/tests
copying setuptools/tests/test_build_ext.py -> build/lib/setuptools/tests
copying setuptools/tests/test_develop.py -> build/lib/setuptools/tests
copying setuptools/tests/test_dist_info.py -> build/lib/setuptools/tests
copying setuptools/tests/test_easy_install.py -> build/lib/setuptools/tests
copying setuptools/tests/test_markerlib.py -> build/lib/setuptools/tests
copying setuptools/tests/test_packageindex.py -> build/lib/setuptools/tests
copying setuptools/tests/test_resources.py -> build/lib/setuptools/tests
copying setuptools/tests/test_sandbox.py -> build/lib/setuptools/tests
copying setuptools/tests/test_sdist.py -> build/lib/setuptools/tests
copying setuptools/tests/test_test.py -> build/lib/setuptools/tests
copying setuptools/tests/test_upload_docs.py -> build/lib/setuptools/tests
copying setuptools/tests/__init__.py -> build/lib/setuptools/tests
copying setuptools/cli-32.exe -> build/lib/setuptools
copying setuptools/cli-64.exe -> build/lib/setuptools
copying setuptools/cli.exe -> build/lib/setuptools
copying setuptools/gui-32.exe -> build/lib/setuptools
copying setuptools/gui-64.exe -> build/lib/setuptools
copying setuptools/gui.exe -> build/lib/setuptools
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
copying build/lib/pkg_resources.py -> build/bdist.linux-x86_64/egg
copying build/lib/easy_install.py -> build/bdist.linux-x86_64/egg
copying build/lib/site.py -> build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/archive_util.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/depends.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/dist.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/extension.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/package_index.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/sandbox.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/script template (dev).py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/script template.py -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/__init__.py -> build/bdist.linux-x86_64/egg/setuptools
creating build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/alias.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/bdist_egg.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/bdist_rpm.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/bdist_wininst.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/build_ext.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/build_py.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/develop.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/easy_install.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install_egg_info.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install_lib.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/install_scripts.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/register.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/rotate.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/saveopts.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/sdist.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/setopt.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/test.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/upload.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/upload_docs.py -> build/bdist.linux-x86_64/egg/setuptools/command
copying build/lib/setuptools/command/__init__.py -> build/bdist.linux-x86_64/egg/setuptools/command
creating build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/doctest.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/py26compat.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/server.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_bdist_egg.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_build_ext.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_develop.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_dist_info.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_easy_install.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_markerlib.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_packageindex.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_resources.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_sandbox.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_sdist.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_test.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/test_upload_docs.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/tests/__init__.py -> build/bdist.linux-x86_64/egg/setuptools/tests
copying build/lib/setuptools/cli-32.exe -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/cli-64.exe -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/cli.exe -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/gui-32.exe -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/gui-64.exe -> build/bdist.linux-x86_64/egg/setuptools
copying build/lib/setuptools/gui.exe -> build/bdist.linux-x86_64/egg/setuptools
creating build/bdist.linux-x86_64/egg/_markerlib
copying build/lib/_markerlib/markers.py -> build/bdist.linux-x86_64/egg/_markerlib
copying build/lib/_markerlib/__init__.py -> build/bdist.linux-x86_64/egg/_markerlib
byte-compiling build/bdist.linux-x86_64/egg/pkg_resources.py to pkg_resources.pyc
byte-compiling build/bdist.linux-x86_64/egg/easy_install.py to easy_install.pyc
byte-compiling build/bdist.linux-x86_64/egg/site.py to site.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/archive_util.py to archive_util.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/depends.py to depends.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/dist.py to dist.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/extension.py to extension.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/package_index.py to package_index.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/sandbox.py to sandbox.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/script template (dev).py to script template (dev).pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/script template.py to script template.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/alias.py to alias.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_egg.py to bdist_egg.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_rpm.py to bdist_rpm.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/bdist_wininst.py to bdist_wininst.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/build_ext.py to build_ext.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/build_py.py to build_py.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/develop.py to develop.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py to easy_install.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/egg_info.py to egg_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install.py to install.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_egg_info.py to install_egg_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_lib.py to install_lib.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/install_scripts.py to install_scripts.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/register.py to register.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/rotate.py to rotate.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/saveopts.py to saveopts.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/sdist.py to sdist.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/setopt.py to setopt.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/test.py to test.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/upload.py to upload.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/upload_docs.py to upload_docs.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/command/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/doctest.py to doctest.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/py26compat.py to py26compat.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/server.py to server.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_bdist_egg.py to test_bdist_egg.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_build_ext.py to test_build_ext.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_develop.py to test_develop.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_dist_info.py to test_dist_info.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_easy_install.py to test_easy_install.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_markerlib.py to test_markerlib.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_packageindex.py to test_packageindex.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_resources.py to test_resources.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_sandbox.py to test_sandbox.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_sdist.py to test_sdist.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_test.py to test_test.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/test_upload_docs.py to test_upload_docs.pyc
byte-compiling build/bdist.linux-x86_64/egg/setuptools/tests/__init__.py to __init__.pyc
byte-compiling build/bdist.linux-x86_64/egg/_markerlib/markers.py to markers.pyc
byte-compiling build/bdist.linux-x86_64/egg/_markerlib/__init__.py to __init__.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying distribute.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying distribute.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying distribute.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying distribute.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying distribute.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying distribute.egg-info/zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO
creating dist
creating 'dist/distribute-0.6.34-py2.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Creating /tmp/tmp3P1tRE/lib/python2.7/site-packages/site.py
Processing distribute-0.6.34-py2.7.egg
creating /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg
Extracting distribute-0.6.34-py2.7.egg to /tmp/tmp3P1tRE/lib/python2.7/site-packages
Adding distribute 0.6.34 to easy-install.pth file
Installing easy_install script to /tmp/tmp3P1tRE/bin
Installing easy_install-2.7 script to /tmp/tmp3P1tRE/bin
Installed /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg
Processing dependencies for distribute==0.6.34
Finished processing dependencies for distribute==0.6.34
After install bootstrap.
Creating /tmp/tmp3P1tRE/lib/python2.7/site-packages/setuptools-0.6c11-py2.7.egg-info
Creating /tmp/tmp3P1tRE/lib/python2.7/site-packages/setuptools.pth
les/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "ZGVyIl09MSxwcm9wVD17fSxbInNob3J0Il09Imxtb2QiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9tb2R1bGVmaWxlcy9MaW51eCIsIi9uL2xvY2FsL3NjYmMvaW5zdC9tb2R1bGVmaWxlcy9Db3JlIiwiL24vbG9jYWwvc2NiYy9pbnN0L2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsWyJ2ZXJzaW9uIl09Mix9";
os.environ["_ModuleTable_Sz_"] = "2";
[[INFO]] Found module command 'lmod' (Lmod), so using it.
[[DEBUG]] sys.path after cleaning: ['/n/local/scbc/build/easyBuild', '/home/mec/local/lib/python', '/n/local/scbc/build/easyBuild', '/usr/lib64/python27.zip', '/usr/lib64/python2.7', '/usr/lib64/python2.7/plat-linux2', '/usr/lib64/python2.7/lib-tk', '/usr/lib64/python2.7/lib-old', '/usr/lib64/python2.7/lib-dynload', '/usr/lib64/python2.7/site-packages', '/usr/lib64/python2.7/site-packages/gtk-2.0', '/usr/lib/python2.7/site-packages']
[[INFO]]
+++ STAGE 0: installing distribute via included (patched) distribute_setup.py...
[[DEBUG]] preparing environment...
[[DEBUG]] Preparing for path /tmp/tmp3P1tRE
[[DEBUG]] os.environ['PYTHONPATH'] after reset:
[[DEBUG]] $EASYBUILD_MODULES_TOOL set to Lmod
[[DEBUG]] distribute_setup.__file__: /tmp/tmp3P1tRE/distribute_setup.py
[[DEBUG]] easy_install sanity check OK
[[DEBUG]] Found egg dir for distribute at /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg
[[DEBUG]] Found setuptools in expected path, good!
[[INFO]]
+++ STAGE 1: installing EasyBuild in temporary dir with easy_install...
[[DEBUG]] Preparing for path /tmp/tmp3P1tRE/eb_stage1
[[DEBUG]] os.environ['PYTHONPATH'] after reset:
[[DEBUG]] $EASYBUILD_MODULES_TOOL set to Lmod
[[DEBUG]] installing EasyBuild with 'easy_install --upgrade --prefix=/tmp/tmp3P1tRE/eb_stage1 easybuild'
Creating /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/site.py
Searching for easybuild
Reading http://pypi.python.org/simple/easybuild/
Best match: easybuild 1.16.1
Downloading https://pypi.python.org/packages/source/e/easybuild/easybuild-1.16.1.tar.gz#md5=e7d6bc3db7824c55c4062136dbddb4dc
Processing easybuild-1.16.1.tar.gz
Writing /tmp/easy_install-XtZJm4/easybuild-1.16.1/setup.cfg
Running easybuild-1.16.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-XtZJm4/easybuild-1.16.1/egg-dist-tmp-eMXmdr
Installing with setuptools.setup...
Installing version 1.16.1
warning: install_lib: 'build/lib' does not exist -- no Python modules to install
zip_safe flag not set; analyzing archive contents...
Adding easybuild 1.16.1 to easy-install.pth file
Installed /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild-1.16.1-py2.7.egg
Processing dependencies for easybuild
Searching for easybuild-framework==1.16.1
Reading http://pypi.python.org/simple/easybuild-framework/
Best match: easybuild-framework 1.16.1
Downloading https://pypi.python.org/packages/source/e/easybuild-framework/easybuild-framework-1.16.1.tar.gz#md5=65fc39572af03c3fb75d7dd45cb6c272
Processing easybuild-framework-1.16.1.tar.gz
Writing /tmp/easy_install-JjHysS/easybuild-framework-1.16.1/setup.cfg
Running easybuild-framework-1.16.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-JjHysS/easybuild-framework-1.16.1/egg-dist-tmp-ZfGIVH
Installing with setuptools.setup...
Installing version 1.16.1 (API version 1)
Adding easybuild-framework 1.16.1 to easy-install.pth file
Installing eb script to /tmp/tmp3P1tRE/eb_stage1/bin
Installing optcomplete.bash script to /tmp/tmp3P1tRE/eb_stage1/bin
Installing minimal_bash_completion.bash script to /tmp/tmp3P1tRE/eb_stage1/bin
Installed /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg
Searching for easybuild-easyblocks==1.16.1
Reading http://pypi.python.org/simple/easybuild-easyblocks/
Best match: easybuild-easyblocks 1.16.1
Downloading https://pypi.python.org/packages/source/e/easybuild-easyblocks/easybuild-easyblocks-1.16.1.tar.gz#md5=55e9ae2d6e8a83a20d69b5b30cb717f4
Processing easybuild-easyblocks-1.16.1.tar.gz
Writing /tmp/easy_install-MzheDy/easybuild-easyblocks-1.16.1/setup.cfg
Running easybuild-easyblocks-1.16.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-MzheDy/easybuild-easyblocks-1.16.1/egg-dist-tmp-vNoiLz
Installing with setuptools.setup...
Installing version 1.16.1 (required versions: API >= 1)
Adding easybuild-easyblocks 1.16.1 to easy-install.pth file
Installed /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyblocks-1.16.1-py2.7.egg
Searching for easybuild-easyconfigs==1.16.1.0
Reading http://pypi.python.org/simple/easybuild-easyconfigs/
Best match: easybuild-easyconfigs 1.16.1.0
Downloading https://pypi.python.org/packages/source/e/easybuild-easyconfigs/easybuild-easyconfigs-1.16.1.0.tar.gz#md5=9c8873a90e8c3cedf05bf1e6d82532e3
Processing easybuild-easyconfigs-1.16.1.0.tar.gz
Writing /tmp/easy_install-1nKjlC/easybuild-easyconfigs-1.16.1.0/setup.cfg
Running easybuild-easyconfigs-1.16.1.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-1nKjlC/easybuild-easyconfigs-1.16.1.0/egg-dist-tmp-mXt0_G
Installing with setuptools.setup...
Installing version 1.16.1.0 (required versions: API >= 1, easyblocks >= 1.16)
warning: install_lib: 'build/lib' does not exist -- no Python modules to install
Adding easybuild-easyconfigs 1.16.1.0 to easy-install.pth file
Installed /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg
Finished processing dependencies for easybuild
[[DEBUG]] Found egg dir for easybuild-easyconfigs at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg
[[DEBUG]] Found version for easybuild-easyconfigs: 1.16.1.0
[[DEBUG]] Found egg dir for easybuild-easyblocks at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyblocks-1.16.1-py2.7.egg
[[DEBUG]] Found version for easybuild-easyblocks: 1.16.1
[[DEBUG]] Found egg dir for easybuild-framework at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg
[[DEBUG]] Found version for easybuild-framework: 1.16.1
[[DEBUG]] Determining EasyBuild version using command 'python -c 'from easybuild.tools.version import this_is_easybuild; print this_is_easybuild()' > /tmp/tmp3P1tRE/eb_version.out 2>&1'
[[DEBUG]] installing EasyBuild v1.16.1
[[DEBUG]] Found easybuild-framework in expected path, good!
[[DEBUG]] Found easybuild-easyblocks in expected path, good!
[[INFO]]
+++ STAGE 2: installing EasyBuild in /n/local/scbc/inst/easyBuild with EasyBuild from stage 1...
[[DEBUG]] Found egg dir for distribute at /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg
[[DEBUG]] Created path /n/local/scbc/inst/easyBuild/modules/all
[[DEBUG]] Running EasyBuild with arguments 'eb /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb --allow-modules-tool-mismatch --debug --logtostdout --prefix=/tmp/tmp3P1tRE --buildpath=/tmp/tmp3P1tRE --installpath=/n/local/scbc/inst/easyBuild'
== 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line no ignore
== 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding aggregate-regtest value None default found. Not adding to args.
== 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding allow-modules-tool-mismatch value True. store action found
== 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding amend value None default found. Not adding to args.
== 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-cfgfile-constants value False default found. Not adding to args.
== 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-constants value False default found. Not adding to args.
== 2015-01-27 17:10:53,525 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-licenses value False default found. Not adding to args.
== 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-params value False default found. Not adding to args.
== 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-templates value False default found. Not adding to args.
== 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-module-naming-schemes value False default found. Not adding to args.
== 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-modules-tools value False default found. Not adding to args.
== 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-repositories value False default found. Not adding to args.
== 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding buildpath value /tmp/tmp3P1tRE
== 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding cleanup-builddir value True default found. Not adding to args.
== 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding config value /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py default found. Not adding to args.
== 2015-01-27 17:10:53,526 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding configfiles value ['/home/mec/.easybuild/config.cfg'] default found. Not adding to args.
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding debug value True. store action found
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dep-graph value None default found. Not adding to args.
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding deprecated value None default found. Not adding to args.
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run value False default found. Not adding to args.
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run-short value False default found. Not adding to args.
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dump-test-report value None. None found. not adding to args.
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding easyblock value None default found. Not adding to args.
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding experimental value False default found. Not adding to args.
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding filter-deps value None default found. Not adding to args.
== 2015-01-27 17:10:53,527 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding force value False default found. Not adding to args.
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding from-pr value None default found. Not adding to args.
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding github-user value None default found. Not adding to args.
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding group value None default found. Not adding to args.
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding hidden value False default found. Not adding to args.
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-dirs value ['.git', '.svn'] default found. Not adding to args.
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-osdeps value False default found. Not adding to args.
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignoreconfigfiles value None default found. Not adding to args.
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding info value False default found. Not adding to args.
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding installpath value /n/local/scbc/inst/easyBuild
== 2015-01-27 17:10:53,528 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding job value False default found. Not adding to args.
== 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-easyblocks value None. None found. not adding to args.
== 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-toolchains value False default found. Not adding to args.
== 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding logfile-format value ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log') default found. Not adding to args.
== 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding logtostdout value True. store action found
== 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding module-naming-scheme value EasyBuildMNS default found. Not adding to args.
== 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding moduleclasses value ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] default found. Not adding to args.
== 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None default found.
== 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None. None found. not adding to args.
== 2015-01-27 17:10:53,529 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-tool value Lmod
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding oldstyleconfig value True default found. Not adding to args.
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding only-blocks value None default found. Not adding to args.
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding optarch value None default found. Not adding to args.
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding prefix value /tmp/tmp3P1tRE
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding pretend value False default found. Not adding to args.
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding quiet value False default found. Not adding to args.
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding recursive-module-unload value False default found. Not adding to args.
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest value False default found. Not adding to args.
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest-output-dir value None default found. Not adding to args.
== 2015-01-27 17:10:53,530 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding repository value FileRepository default found. Not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding robot value None. None found. not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding robot-paths value ['/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs'] default found. Not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search value None default found. Not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search-short value None default found. Not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sequential value False default found. Not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding set-gid-bit value False default found. Not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding show-default-moduleclasses value False default found. Not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip value False default found. Not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip-test-cases value False default found. Not adding to args.
== 2015-01-27 17:10:53,531 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software value None default found. Not adding to args.
== 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-name value None default found. Not adding to args.
== 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-version value None default found. Not adding to args.
== 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sourcepath value /tmp/tmp3P1tRE/sources
== 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sticky-bit value False default found. Not adding to args.
== 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding stop value None. None found. not adding to args.
== 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding strict value warn default found. Not adding to args.
== 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-modules value modules default found. Not adding to args.
== 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-software value software default found. Not adding to args.
== 2015-01-27 17:10:53,532 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding suffix-modules-path value all default found. Not adding to args.
== 2015-01-27 17:10:53,533 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding test-report-env-filter value None default found. Not adding to args.
== 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding testoutput value None default found. Not adding to args.
== 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmp-logdir value /tmp default found. Not adding to args.
== 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmpdir value None default found. Not adding to args.
== 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain value ['goalf', '1.1.0-no-OFED']
== 2015-01-27 17:10:53,541 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-name value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-version value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-amend value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-name value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-version value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-name value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-version value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding umask value None default found. Not adding to args.
== 2015-01-27 17:10:53,542 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding unittest-file value None default found. Not adding to args.
== 2015-01-27 17:10:53,543 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding upload-test-report value None default found. Not adding to args.
== 2015-01-27 17:10:53,543 bootstrap_eb.EasyBuildOptions DEBUG commandline args ['--allow-modules-tool-mismatch', '--buildpath=/tmp/tmp3P1tRE', '--debug', '--installpath=/n/local/scbc/inst/easyBuild', '--logtostdout', '--modules-tool=Lmod', '--prefix=/tmp/tmp3P1tRE', '--repositorypath=/tmp/tmp3P1tRE/ebfiles_repo', '--sourcepath=/tmp/tmp3P1tRE/sources', '--toolchain="[\'goalf\', \'1.1.0-no-OFED\']"']
== 2015-01-27 17:10:53,543 bootstrap_eb INFO This is EasyBuild 1.16.1 (framework: 1.16.1, easyblocks: 1.16.1) on host catalpa.sgc.loc.
== 2015-01-27 17:10:53,544 bootstrap_eb INFO Command line: --allow-modules-tool-mismatch --buildpath=/tmp/tmp3P1tRE --debug --installpath=/n/local/scbc/inst/easyBuild --logtostdout --modules-tool=Lmod --prefix=/tmp/tmp3P1tRE --repositorypath=/tmp/tmp3P1tRE/ebfiles_repo --sourcepath=/tmp/tmp3P1tRE/sources --toolchain="['goalf', '1.1.0-no-OFED']" /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb
== 2015-01-27 17:10:53,545 bootstrap_eb INFO Using /tmp/easybuild-ANu7Lt as temporary directory
== 2015-01-27 17:10:53,545 bootstrap_eb.tools.robot INFO Using robot path(s): ['/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs']
== 2015-01-27 17:10:53,545 bootstrap_eb DEBUG Full robot path: ['/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs']
== 2015-01-27 17:10:53,546 bootstrap_eb.config DEBUG variables before oldstyle_init {}
== 2015-01-27 17:10:53,546 bootstrap_eb.tools.utilities DEBUG importing module easybuild.tools.repository.filerepo
== 2015-01-27 17:10:53,547 bootstrap_eb.tools.utilities DEBUG importing module easybuild.tools.repository.gitrepo
== 2015-01-27 17:10:53,547 bootstrap_eb.tools.utilities DEBUG importing module easybuild.tools.repository.repository
== 2015-01-27 17:10:53,547 bootstrap_eb.tools.utilities DEBUG importing module easybuild.tools.repository.svnrepo
== 2015-01-27 17:10:53,549 bootstrap_eb.config DEBUG variables after oldstyle_init read_configuration (/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py) {'build_path': '/home/mec/.local/easybuild/build', 'GitRepository': <class 'easybuild.tools.repository.gitrepo.GitRepository'>, 'module_classes': ['base', 'bio', 'chem', 'compiler', 'lib', 'phys', 'tools', 'cae', 'data', 'debugger', 'devel', 'ide', 'math', 'mpi', 'numlib', 'perf', 'system', 'vis'], 'repository': <easybuild.tools.repository.filerepo.FileRepository object at 0x281ce10>, 'source_path': '/home/mec/.local/easybuild/sources', 'install_path': '/home/mec/.local/easybuild', 'repository_path': '/home/mec/.local/easybuild/ebfiles_repo', 'log_dir': '/tmp/easybuild-ANu7Lt', 'log_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'FileRepository': <class 'easybuild.tools.repository.filerepo.FileRepository'>, '__doc__': '\nEasyBuild configuration file.\n This is now frozen.\n All new configuration should be done through the options parser.\n This is deprecated and will be removed in 2.0\n\n@author: Stijn De Weirdt (Ghent University)\n@author: Dries Verdegem (Ghent University)\n@author: Kenneth Hoste (Ghent University)\n@author: Pieter De Baets (Ghent University)\n@author: Jens Timmerman (Ghent University)\n@author: Toon Willems (Ghent University)\n@author: Fotis Georgatos (Uni.Lu, NTUA)\n', 'SvnRepository': <class 'easybuild.tools.repository.svnrepo.SvnRepository'>}
== 2015-01-27 17:10:53,549 bootstrap_eb.config DEBUG Old style env var EASYBUILDBUILDPATH not defined.
== 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDTESTOUTPUT not defined.
== 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDCONFIG not defined.
== 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDSOURCEPATH not defined.
== 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDINSTALLPATH not defined.
== 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDLOGDIR not defined.
== 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Old style env var EASYBUILDLOGFORMAT not defined.
== 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG variables after oldstyle_init read_environment {'build_path': '/home/mec/.local/easybuild/build', 'GitRepository': <class 'easybuild.tools.repository.gitrepo.GitRepository'>, 'module_classes': ['base', 'bio', 'chem', 'compiler', 'lib', 'phys', 'tools', 'cae', 'data', 'debugger', 'devel', 'ide', 'math', 'mpi', 'numlib', 'perf', 'system', 'vis'], 'repository': <easybuild.tools.repository.filerepo.FileRepository object at 0x281ce10>, 'source_path': '/home/mec/.local/easybuild/sources', 'install_path': '/home/mec/.local/easybuild', 'repository_path': '/home/mec/.local/easybuild/ebfiles_repo', 'log_dir': '/tmp/easybuild-ANu7Lt', 'log_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'FileRepository': <class 'easybuild.tools.repository.filerepo.FileRepository'>, '__doc__': '\nEasyBuild configuration file.\n This is now frozen.\n All new configuration should be done through the options parser.\n This is deprecated and will be removed in 2.0\n\n@author: Stijn De Weirdt (Ghent University)\n@author: Dries Verdegem (Ghent University)\n@author: Kenneth Hoste (Ghent University)\n@author: Pieter De Baets (Ghent University)\n@author: Jens Timmerman (Ghent University)\n@author: Toon Willems (Ghent University)\n@author: Fotis Georgatos (Uni.Lu, NTUA)\n', 'SvnRepository': <class 'easybuild.tools.repository.svnrepo.SvnRepository'>}
== 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Oldstyle support: no action for dest moduleclasses.
== 2015-01-27 17:10:53,550 bootstrap_eb.config DEBUG Oldstyle support: no action for dest logfile_format.
== 2015-01-27 17:10:53,551 bootstrap_eb.config DEBUG Oldstyle support: no action for dest tmp_logdir.
== 2015-01-27 17:10:53,551 bootstrap_eb.config DEBUG Updating config variables with generaloption dict {'show_default_moduleclasses': False, 'module_naming_scheme': 'EasyBuildMNS', 'avail_module_naming_schemes': False, 'prefix': '/tmp/tmp3P1tRE', 'tmpdir': None, 'modules_tool': 'Lmod', 'repository': 'FileRepository', 'installpath': '/n/local/scbc/inst/easyBuild', 'testoutput': None, 'subdir_software': 'software', 'config': '/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py', 'ignore_dirs': ['.git', '.svn'], 'buildpath': '/tmp/tmp3P1tRE', 'suffix_modules_path': 'all', 'repositorypath': ['/tmp/tmp3P1tRE/ebfiles_repo'], 'subdir_modules': 'modules', 'avail_modules_tools': False, 'modules_footer': None, 'recursive_module_unload': False, 'sourcepath': '/tmp/tmp3P1tRE/sources', 'avail_repositories': False}
== 2015-01-27 17:10:53,551 bootstrap_eb.config DEBUG Converted source path ('/tmp/tmp3P1tRE/sources') to a list of paths: ['/tmp/tmp3P1tRE/sources']
== 2015-01-27 17:10:53,551 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'show_default_moduleclasses' (value 'False')
== 2015-01-27 17:10:53,560 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'avail_module_naming_schemes' (value 'False')
== 2015-01-27 17:10:53,560 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'modules_footer' (value 'None')
== 2015-01-27 17:10:53,560 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'FileRepository' (value '<class 'easybuild.tools.repository.filerepo.FileRepository'>')
== 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'tmpdir' (value 'None')
== 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'GitRepository' (value '<class 'easybuild.tools.repository.gitrepo.GitRepository'>')
== 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'avail_modules_tools' (value 'False')
== 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'suffix_modules_path' (value 'all')
== 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'recursive_module_unload' (value 'False')
== 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'avail_repositories' (value 'False')
== 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'SvnRepository' (value '<class 'easybuild.tools.repository.svnrepo.SvnRepository'>')
== 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key '__doc__' (value '
EasyBuild configuration file.
This is now frozen.
All new configuration should be done through the options parser.
This is deprecated and will be removed in 2.0
@author: Stijn De Weirdt (Ghent University)
@author: Dries Verdegem (Ghent University)
@author: Kenneth Hoste (Ghent University)
@author: Pieter De Baets (Ghent University)
@author: Jens Timmerman (Ghent University)
@author: Toon Willems (Ghent University)
@author: Fotis Georgatos (Uni.Lu, NTUA)
')
== 2015-01-27 17:10:53,561 bootstrap_eb.ConfigurationVariables DEBUG Ignoring unknown key 'ignore_dirs' (value '['.git', '.svn']')
== 2015-01-27 17:10:53,561 bootstrap_eb.config DEBUG Config variables: <FrozenDict {'modules_tool': 'Lmod', 'subdir_modules': 'modules', 'buildpath': '/tmp/tmp3P1tRE', 'repository': 'FileRepository', 'module_naming_scheme': 'EasyBuildMNS', 'sourcepath': ['/tmp/tmp3P1tRE/sources'], 'testoutput': None, 'installpath': '/n/local/scbc/inst/easyBuild', 'repositorypath': ['/tmp/tmp3P1tRE/ebfiles_repo'], 'moduleclasses': ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'], 'prefix': '/tmp/tmp3P1tRE', 'subdir_software': 'software', 'logfile_format': ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'), 'tmp_logdir': '/tmp/easybuild-ANu7Lt', 'config': '/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py'}>
== 2015-01-27 17:10:53,562 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line no ignore
== 2015-01-27 17:10:53,562 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding aggregate-regtest value None default found.
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding aggregate-regtest value None. None found. not adding to args.
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding allow-modules-tool-mismatch value True. store action found
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding amend value None default found.
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding amend value None. None found. not adding to args.
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-cfgfile-constants value False default found.
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-cfgfile-constants value False. store action found
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-constants value False default found.
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-constants value False. store action found
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-licenses value False default found.
== 2015-01-27 17:10:53,563 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-licenses value False. store action found
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-params value False default found.
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-params value False. store action found
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-templates value False default found.
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-easyconfig-templates value False. store action found
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-module-naming-schemes value False default found.
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-module-naming-schemes value False. store action found
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-modules-tools value False default found.
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-modules-tools value False. store action found
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-repositories value False default found.
== 2015-01-27 17:10:53,564 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding avail-repositories value False. store action found
== 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding buildpath value /tmp/tmp3P1tRE
== 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding cleanup-builddir value True default found.
== 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding cleanup-builddir value True. store action found
== 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding config value /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py default found.
== 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding config value /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py
== 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding configfiles value ['/home/mec/.easybuild/config.cfg'] default found.
== 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line no value left, skipping.
== 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding debug value True. store action found
== 2015-01-27 17:10:53,565 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dep-graph value None default found.
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dep-graph value None. None found. not adding to args.
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding deprecated value None default found.
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding deprecated value None. None found. not adding to args.
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run value False default found.
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run value False. store action found
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run-short value False default found.
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dry-run-short value False. store action found
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding dump-test-report value None. None found. not adding to args.
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding easyblock value None default found.
== 2015-01-27 17:10:53,566 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding easyblock value None. None found. not adding to args.
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding experimental value False default found.
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding experimental value False. store action found
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding filter-deps value None default found.
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding filter-deps value None. None found. not adding to args.
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding force value False default found.
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding force value False. store action found
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding from-pr value None default found.
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding from-pr value None. None found. not adding to args.
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding github-user value None default found.
== 2015-01-27 17:10:53,567 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding github-user value None. None found. not adding to args.
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding group value None default found.
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding group value None. None found. not adding to args.
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding hidden value False default found.
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding hidden value False. store action found
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-dirs value ['.git', '.svn'] default found.
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-osdeps value False default found.
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignore-osdeps value False. store action found
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignoreconfigfiles value None default found.
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding ignoreconfigfiles value None. None found. not adding to args.
== 2015-01-27 17:10:53,568 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding info value False default found.
== 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding info value False. store action found
== 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding installpath value /n/local/scbc/inst/easyBuild
== 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding job value False default found.
== 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding job value False. store action found
== 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-easyblocks value None. None found. not adding to args.
== 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-toolchains value False default found.
== 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding list-toolchains value False. store action found
== 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding logfile-format value ('easybuild', 'easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log') default found.
== 2015-01-27 17:10:53,569 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding logtostdout value True. store action found
== 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding module-naming-scheme value EasyBuildMNS default found.
== 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding module-naming-scheme value EasyBuildMNS
== 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding moduleclasses value ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis'] default found.
== 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding moduleclasses value ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis']
== 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None default found.
== 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-footer value None. None found. not adding to args.
== 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding modules-tool value Lmod
== 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding oldstyleconfig value True default found.
== 2015-01-27 17:10:53,570 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding oldstyleconfig value True. store action found
== 2015-01-27 17:10:53,571 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding only-blocks value None default found.
== 2015-01-27 17:10:53,579 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding only-blocks value None. None found. not adding to args.
== 2015-01-27 17:10:53,579 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding optarch value None default found.
== 2015-01-27 17:10:53,579 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding optarch value None. None found. not adding to args.
== 2015-01-27 17:10:53,579 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding prefix value /tmp/tmp3P1tRE
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding pretend value False default found.
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding pretend value False. store action found
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding quiet value False default found.
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding quiet value False. store action found
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding recursive-module-unload value False default found.
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding recursive-module-unload value False. store action found
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest value False default found.
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest value False. store action found
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest-output-dir value None default found.
== 2015-01-27 17:10:53,580 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding regtest-output-dir value None. None found. not adding to args.
== 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding repository value FileRepository default found.
== 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding repository value FileRepository
== 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding robot value None. None found. not adding to args.
== 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding robot-paths value ['/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs'] default found.
== 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search value None default found.
== 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search value None. None found. not adding to args.
== 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search-short value None default found.
== 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding search-short value None. None found. not adding to args.
== 2015-01-27 17:10:53,581 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sequential value False default found.
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sequential value False. store action found
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding set-gid-bit value False default found.
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding set-gid-bit value False. store action found
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding show-default-moduleclasses value False default found.
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding show-default-moduleclasses value False. store action found
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip value False default found.
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip value False. store action found
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip-test-cases value False default found.
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding skip-test-cases value False. store action found
== 2015-01-27 17:10:53,582 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software value None default found.
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software value None. None found. not adding to args.
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-name value None default found.
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-name value None. None found. not adding to args.
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-version value None default found.
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding software-version value None. None found. not adding to args.
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sourcepath value /tmp/tmp3P1tRE/sources
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sticky-bit value False default found.
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding sticky-bit value False. store action found
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding stop value None. None found. not adding to args.
== 2015-01-27 17:10:53,583 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding strict value warn default found.
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding strict value warn
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-modules value modules default found.
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-modules value modules
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-software value software default found.
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding subdir-software value software
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding suffix-modules-path value all default found.
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding suffix-modules-path value all
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding test-report-env-filter value None default found.
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding test-report-env-filter value None. None found. not adding to args.
== 2015-01-27 17:10:53,584 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding testoutput value None default found.
== 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding testoutput value None. None found. not adding to args.
== 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmp-logdir value /tmp default found.
== 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmp-logdir value /tmp
== 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmpdir value None default found.
== 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding tmpdir value None. None found. not adding to args.
== 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain value ['goalf', '1.1.0-no-OFED']
== 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-name value None default found.
== 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-name value None. None found. not adding to args.
== 2015-01-27 17:10:53,585 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-version value None default found.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding toolchain-version value None. None found. not adding to args.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-amend value None default found.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-amend value None. None found. not adding to args.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software value None default found.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software value None. None found. not adding to args.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-name value None default found.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-name value None. None found. not adding to args.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-version value None default found.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-software-version value None. None found. not adding to args.
== 2015-01-27 17:10:53,586 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain value None default found.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain value None. None found. not adding to args.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-name value None default found.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-name value None. None found. not adding to args.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-version value None default found.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding try-toolchain-version value None. None found. not adding to args.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding umask value None default found.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding umask value None. None found. not adding to args.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding unittest-file value None default found.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding unittest-file value None. None found. not adding to args.
== 2015-01-27 17:10:53,587 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding upload-test-report value None default found.
== 2015-01-27 17:10:53,588 bootstrap_eb.EasyBuildOptions DEBUG generate_cmd_line adding upload-test-report value None. None found. not adding to args.
== 2015-01-27 17:10:53,588 bootstrap_eb.EasyBuildOptions DEBUG commandline args ['--allow-modules-tool-mismatch', '--disable-avail-cfgfile-constants', '--disable-avail-easyconfig-constants', '--disable-avail-easyconfig-licenses', '--disable-avail-easyconfig-params', '--disable-avail-easyconfig-templates', '--disable-avail-module-naming-schemes', '--disable-avail-modules-tools', '--disable-avail-repositories', '--buildpath=/tmp/tmp3P1tRE', '--cleanup-builddir', '--config=/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py', '--debug', '--disable-dry-run', '--disable-dry-run-short', '--disable-experimental', '--disable-force', '--disable-hidden', '--ignore-dirs=.git,.svn', '--disable-ignore-osdeps', '--disable-info', '--installpath=/n/local/scbc/inst/easyBuild', '--disable-job', '--disable-list-toolchains', '--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log', '--logtostdout', '--module-naming-scheme=EasyBuildMNS', '--moduleclasses="[\'base\', \'bio\', \'cae\', \'chem\', \'compiler\', \'data\', \'debugger\', \'devel\', \'geo\', \'ide\', \'lang\', \'lib\', \'math\', \'mpi\', \'numlib\', \'perf\', \'phys\', \'system\', \'toolchain\', \'tools\', \'vis\']"', '--modules-tool=Lmod', '--oldstyleconfig', '--prefix=/tmp/tmp3P1tRE', '--disable-pretend', '--disable-quiet', '--disable-recursive-module-unload', '--disable-regtest', '--repository=FileRepository', '--repositorypath=/tmp/tmp3P1tRE/ebfiles_repo', '--robot-paths=/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs', '--disable-sequential', '--disable-set-gid-bit', '--disable-show-default-moduleclasses', '--disable-skip', '--disable-skip-test-cases', '--sourcepath=/tmp/tmp3P1tRE/sources', '--disable-sticky-bit', '--strict=warn', '--subdir-modules=modules', '--subdir-software=software', '--suffix-modules-path=all', '--tmp-logdir=/tmp', '--toolchain="[\'goalf\', \'1.1.0-no-OFED\']"']
== 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG Set command via environment variable LMOD_CMD
== 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG Using command /n/local/scbc/inst/lmod/lmod/libexec/lmod
== 2015-01-27 17:10:53,589 bootstrap_eb.filetools INFO Command /n/local/scbc/inst/lmod/lmod/libexec/lmod found at /n/local/scbc/inst/lmod/lmod/libexec/lmod
== 2015-01-27 17:10:53,589 bootstrap_eb.Lmod INFO Full path for module command is /n/local/scbc/inst/lmod/lmod/libexec/lmod, so using it
== 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG $MODULEPATH after set_mod_paths:
== 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG self.mod_paths set based on $MODULEPATH: []
== 2015-01-27 17:10:53,589 bootstrap_eb.filetools DEBUG Not creating existing path /n/local/scbc/inst/easyBuild/modules/all
== 2015-01-27 17:10:53,589 bootstrap_eb.Lmod DEBUG Current MODULEPATH:
== 2015-01-27 17:10:53,599 bootstrap_eb.Lmod DEBUG Adjusted LD_LIBRARY_PATH from '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:' to '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:'
== 2015-01-27 17:10:53,599 bootstrap_eb.Lmod DEBUG Running module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python use /n/local/scbc/inst/easyBuild/modules/all' from /tmp/tmp3P1tRE
== 2015-01-27 17:10:53,681 bootstrap_eb.Lmod DEBUG Output of module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python use /n/local/scbc/inst/easyBuild/modules/all': stdout: os.environ['LOADEDMODULES'] = ''
del os.environ['LOADEDMODULES']
os.environ['MODULEPATH'] = ''
del os.environ['MODULEPATH']
os.environ["PATH"] = "/tmp/tmp3P1tRE/eb_stage1/bin:/n/local/scbc/inst/lua/lua/bin:/home/mec/bin/x86_64:/home/mec/bin/kentCurrent_x86_64:/home/mec/local/bin:/home/mec/local/sratoolkit.2.2.2b-centos_linux64/bin:/home/mec/local/texlive/2013/bin/x86_64-linux:/home/mec/local/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin";
os.environ['_LMFILES_'] = ''
del os.environ['_LMFILES_']
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::";
os.environ['LOADEDMODULES'] = ''
del os.environ['LOADEDMODULES']
os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all";
os.environ["PATH"] = "/tmp/tmp3P1tRE/eb_stage1/bin:/n/local/scbc/inst/lua/lua/bin:/home/mec/bin/x86_64:/home/mec/bin/kentCurrent_x86_64:/home/mec/local/bin:/home/mec/local/sratoolkit.2.2.2b-centos_linux64/bin:/home/mec/local/texlive/2013/bin/x86_64-linux:/home/mec/local/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin";
os.environ['_LMFILES_'] = ''
del os.environ['_LMFILES_']
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "PSJsbW9kIixbInN0YXR1cyJdPSJpbmFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9lYXN5QnVpbGQvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr:
== 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG Correcting paths in LD_LIBRARY_PATH from ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/', ''] to ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/']
== 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG $MODULEPATH after set_mod_paths: /n/local/scbc/inst/easyBuild/modules/all
== 2015-01-27 17:10:53,682 bootstrap_eb.Lmod INFO Prepended list of module paths with path used by EasyBuild: /n/local/scbc/inst/easyBuild/modules/all
== 2015-01-27 17:10:53,682 bootstrap_eb.filetools DEBUG Not creating existing path /n/local/scbc/inst/easyBuild/modules/all
== 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG Current MODULEPATH: /n/local/scbc/inst/easyBuild/modules/all
== 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG Adjusted LD_LIBRARY_PATH from '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/' to '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:'
== 2015-01-27 17:10:53,682 bootstrap_eb.Lmod DEBUG Running module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python use /n/local/scbc/inst/easyBuild/modules/all' from /tmp/tmp3P1tRE
== 2015-01-27 17:10:53,758 bootstrap_eb.Lmod DEBUG Output of module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python use /n/local/scbc/inst/easyBuild/modules/all': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::";
os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::";
os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "PSJsbW9kIixbInN0YXR1cyJdPSJpbmFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9lYXN5QnVpbGQvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr:
== 2015-01-27 17:10:53,759 bootstrap_eb.Lmod DEBUG Correcting paths in LD_LIBRARY_PATH from ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/'] to ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/']
== 2015-01-27 17:10:53,759 bootstrap_eb.Lmod INFO $MODULEPATH set based on list of module paths (via 'module use'): /n/local/scbc/inst/easyBuild/modules/all
== 2015-01-27 17:10:53,759 bootstrap_eb.run DEBUG run_cmd: running cmd type module (in /tmp/tmp3P1tRE)
== 2015-01-27 17:10:53,766 bootstrap_eb.run DEBUG cmd "type module" exited with exitcode 0 and output:
module is a function
module ()
{
eval $($LMOD_CMD bash "$@");
[ $? = 0 ] && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
== 2015-01-27 17:10:53,766 bootstrap_eb.run DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2015-01-27 17:10:53,766 bootstrap_eb.Lmod DEBUG Found pattern '.*(lmod|LMOD_CMD)' in defined 'module' function.
== 2015-01-27 17:10:53,766 bootstrap_eb.Lmod DEBUG Current MODULEPATH: /n/local/scbc/inst/easyBuild/modules/all
== 2015-01-27 17:10:53,767 bootstrap_eb.Lmod DEBUG Adjusted LD_LIBRARY_PATH from '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/' to '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:'
== 2015-01-27 17:10:53,767 bootstrap_eb.Lmod DEBUG Running module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python --version' from /tmp/tmp3P1tRE
== 2015-01-27 17:10:53,833 bootstrap_eb.Lmod DEBUG Output of module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python --version': stdout: ; stderr:
Modules based on Lua: Version 5.8.5 (5.8.5-1-g201a61d) 2015-01-23 15:54
by Robert McLay mclay@tacc.utexas.edu
== 2015-01-27 17:10:53,834 bootstrap_eb.Lmod INFO Found version 5.8.5
== 2015-01-27 17:10:53,834 bootstrap_eb.Lmod INFO Converted actual version to '5.8.5'
== 2015-01-27 17:10:53,834 bootstrap_eb.Lmod DEBUG Version 5.8.5 matches requirement 5.6.3
== 2015-01-27 17:10:53,834 bootstrap_eb.Lmod DEBUG Current MODULEPATH: /n/local/scbc/inst/easyBuild/modules/all
== 2015-01-27 17:10:53,834 bootstrap_eb.Lmod DEBUG Adjusted LD_LIBRARY_PATH from '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/' to '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:'
== 2015-01-27 17:10:53,835 bootstrap_eb.Lmod DEBUG Running module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python --terse list' from /tmp/tmp3P1tRE
== 2015-01-27 17:10:53,910 bootstrap_eb.Lmod DEBUG Output of module command '/n/local/scbc/inst/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::";
os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all:/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::";
os.environ["MODULEPATH"] = "/n/local/scbc/inst/easyBuild/modules/all";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "PSJsbW9kIixbInN0YXR1cyJdPSJpbmFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9lYXN5QnVpbGQvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr:
== 2015-01-27 17:10:53,910 bootstrap_eb.Lmod DEBUG Correcting paths in LD_LIBRARY_PATH from ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/'] to ['/home/mec/local/lib64', '/home/mec/local/lib', '/usr/lib64/']
== 2015-01-27 17:10:53,911 bootstrap_eb DEBUG Initial session state: {'environment': {'BASH_FUNC_dupfind_name()': '() { find $1 -type f -printf \'%h\\t%f\\n\' | sort --field-separator=\'\t\' --key=2 | uniq --skip-fields=1 --all-repeated | perl -a -n -e \'print "dupfilename: $F[1]\\n" unless $lastkey eq $F[1]; $lastkey = pop(@F); print "\\t@F\\n"\'\n}', 'DBI_CONF': '/home/mec/.dbirc', 'QT_GRAPHICSSYSTEM_CHECKED': '1', 'BASH_FUNC_perlClassWhich()': '() { classname=$1;\n perl -MClass::ISA -MClass::Inspector -M$classname -e \'my $c = shift; my @c = Class::ISA::self_and_super_path("$c"); foreach my $fn (@ARGV) {print "\\n$fn:\\t", join "\\t", (grep {Class::Inspector->function_exists($_, $fn)} @c),"\\n"}\' $classname $@\n}', 'SHELL': '/bin/bash', 'BASH_FUNC_rnews()': "() { find /n/local/stage/r/R-3.0.2/install/lib64/R/library/* -maxdepth 0 ${@} | parallel -j 1 'echo {} & head {}/NEWS'\n}", 'BASH_FUNC_demo_molecular_weight()': '() { bioio --Module Bio::Tools::SeqStats --inopt format=fasta -n -e \'local ($,,$\\)=("\\t","\\n"); print $_->display_id, @{Bio::Tools::SeqStats->new($_)->get_mol_wt};\'\n}', 'HISTSIZE': '1000', 'DBI_DRIVER': 'mysql:test;host=mysql-dev', 'BASH_FUNC_seqargsflock()': '() { local N=$1;\n local P=$2;\n local H1=$3;\n local H2=$4;\n local INF=$5;\n local OUTF=$6;\n shift 6;\n local CMD=$@;\n rm -f $OUTF;\n eval \'printf "%s\\n"\' {1..$(( ${N} - 1 ))};\n xargs -P ${P} -i bash -c "nth -h=${H1} -n=${N} -m={} \\"${INF}\\" | ${CMD} | tmpflockappend ${H2} \\"${OUTF}\\""\n}', 'BASH_FUNC_mrw()': "() { find ${MRWPATH} -user ${USER} -name '*.org' | xargs ls -t -1 | tac\n}", 'BASH_FUNC_gfftabmap()': '() { local perlcode=$1;\n shift;\n perl -F\'\\t\' -lap -e \'BEGIN{$"="\\t"}; next unless $#F == 8;\' -e "$perlcode" -e\'$_= "@F"\' $@\n}', 'BASH_FUNC_quotearg()': '() { local q=("$@");\n echo ${q[0]} - ${q[@]};\n q=("${q[@]/#/\\\'}");\n echo ${q[0]} - ${q[@]};\n q=("${q[@]/%/\\\'}");\n echo ${q[1]} - ${q[@]};\n echo "${q[@]}"\n}', 'XDG_RUNTIME_DIR': '/run/user/1232', 'PYTHONPATH': '/tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg', 'LMOD_arch': 'x86_64', 'BASH_FUNC_transfacpatsearch()': '() { ${TRANSFAC}/patch/bin/patsearch $@\n}', 'XDG_SESSION_ID': '2161', 'TERMCAP': '', 'HOSTNAME': 'catalpa.sgc.loc', 'DSQUERY': 'SQLDEV01', 'MODULESHOME': '/n/local/scbc/inst/lmod/lmod', '_ModuleTable002_': 'ZGVyIl09MSxwcm9wVD17fSxbInNob3J0Il09Imxtb2QiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9uL2xvY2FsL3NjYmMvaW5zdC9tb2R1bGVmaWxlcy9MaW51eCIsIi9uL2xvY2FsL3NjYmMvaW5zdC9tb2R1bGVmaWxlcy9Db3JlIiwiL24vbG9jYWwvc2NiYy9pbnN0L2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsWyJ2ZXJzaW9uIl09Mix9', 'LMOD_PKG': '/n/local/scbc/inst/lmod/lmod', 'MAIL': '/var/spool/mail/mec', 'LS_COLORS': '', 'BASH_FUNC_llpfind()': '() { find ${LD_LIBRARY_PATH//:/ } /lib /usr/lib /usr/lib64 -maxdepth 1 $@ -print\n}', 'BASH_FUNC_TFmatrix2files()': '() { perl -ne \'print "$1\\n" if m/^AC\\s*(.*)/\' $TRANSFAC/data/matrix.dat | TFMatID2 $@\n}', 'TDSDUMPCONFIG': '/home/mec/.TDSDUMPCONFIG', 'LESSOPEN': '||/usr/bin/lesspipe.sh %s', 'LMOD_FULL_SETTARG_SUPPORT': 'no', 'BASH_FUNC_readseq()': '() { java -cp /n/facility/Bioinformatics/Software/Readseq/readseq.jar run -pipe $@\n}', 'EMACS': 't', 'USER': 'mec', 'PS1': '\\u@\\h> ', 'BASH_FUNC_tmpflockappend()': '() { local H=$1;\n local APPENDTO=$2;\n shift 2;\n local MKTEMPARGS=$@;\n TMPFILE=`mktemp ${MKTEMPARGS}` || return;\n cat > $TMPFILE;\n flock $APPENDTO --command "if [[ ! -s $APPENDTO ]] ; then cat $TMPFILE > $APPENDTO ; elif [[ 0 == ${H} ]] ; then cat $TMPFILE >> $APPENDTO ; else tail --lines=+$(( 1 + ${H} )) $TMPFILE >> $APPENDTO ; fi";\n rm -f $TMPFILE\n}', 'SHLVL': '2', 'BASH_FUNC_fastargs()': '() { local fastafile=$1;\n shift;\n local cmd=$@;\n seqcnt=`grep -c \'^>\' $fastafile`;\n seqcnt=4;\n for ((seqi=1 ; $seqi <= seqcnt ; seqi++))\n do\n echo -ne "<(fasta_item $seqi $fastafile 2> /dev/null)\\0000";\n done | xargs -0 -i /usr/local/bin/bash -c "\'$cmd\'"\n}', 'BASH_FUNC_pMooseCmd()': '() { local M=$1;\n shift;\n local E=\'BEGIN{$M\'=${M}\'->new_with_options();@ARGV=@{$M->extra_argv}}\';\n perl -M${M} -e ${E} "$@"\n}', 'BASH_FUNC_dbimapqry()': '() { perl -MDBI -MSQL::Library -sane \'BEGIN{our $dbh = DBI->connect($dsn, $user, $password); our $sth = $dbh->prepare(SQL::Library->new({lib => $lib})->retr($qry)); $,="\\t"; $\\="\\n";}; next if /^\\s*#/ or /^\\s*$/ ; $sth->execute(@F) or die $dbh->errstr; map {print @$_} @{$sth->fetchall_arrayref}\' -- $@\n}', 'EDITOR': 'emacsclient --alternate-editor="emacs -nw" -c ', 'HOMEBREW_VERBOSE': '1', 'BASH_FUNC_peval()': '() { local P=$1;\n shift;\n xargs -P $P -L 1 bash --noprofile --norc -c \'eval "$@"\' --\n}', 'FIGNORE': '/home/mec', 'CVSROOT': 'zeta:/data1/cvs', 'BASH_FUNC_perlWhichModuleVersion()': "() { local module=$1;\n shift;\n perl -M${module} -w -e 'my $modname = shift; my $VERS = $modname->VERSION; my $modfile = $modname; $modfile =~ s/\\:\\:/\\//g; $modfile .= q{.pm}; print qq{$modname\\t$VERS\\t$modfile\\t$INC{$modfile}\\n}' -- ${module}\n}", 'QT_PLUGIN_PATH': '/usr/lib64/kde4/plugins:/usr/lib/kde4/plugins', 'BASH_FUNC_fatab()': "() { perl -0 -p -e 's/^([^>][^\\n]*)\\n(?!>)(?=.)/$1/gims; s/^(>[^\\n]*)\\n/$1\\t/gms; ' $@\n}", '_ModuleTable001_': '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', 'BASH_FUNC_fasta_item()': '() { java -cp /n/facility/Bioinformatics/Software/Readseq/readseq.jar run f=fasta -pipe informat=fa format=fa -item=$@\n}', 'MRWPATH': '/n/projects/mec/ShilatifardLab/analysis', 'PRINTER': 'PC010301', 'BASH_FUNC_transfacmatch()': '() { ${TRANSFAC}/match/bin/match $@\n}', 'BASH_ENV': '/n/local/scbc/inst/lmod/lmod/init/bash', 'BASH_FUNC_joinlines()': "() { local DELIM=$1;\n shift;\n perl -s -F'\\n' -0ape '$_=join($d,@F)' -- -d=${DELIM} $@\n}", 'BASH_FUNC_pM()': '() { local m=$1;\n local a=$2;\n shift 2;\n local e="BEGIN{\\$new||=q{new}; \\$M = $m->\\$new($a);}"\\ ;\n echo perl -w -M${m} -e "$e" "$@";\n perl -w -M${m} -e "$e" "$@"\n}', '_': '/usr/bin/python', 'MODULEPATH': '', 'PERL5LIB': '~/svn/bioperl-ext:~/svn/bioperl-live:', 'SSH_CONNECTION': '10.2.20.57 55665 10.0.53.20 22', 'BASH_FUNC_rdt()': '() { Rscript --vanilla --default-packages=data.table,utils -e "dt=fread(\'file:///dev/stdin\')" -e "invisible(write.table("$@",file=stdout(),quote=FALSE,sep=\'\\t\',row.names=FALSE))"\n}', 'SHELL_STARTUP_DEBUG': '1', 'LMOD_DEFAULT_MODULEPATH': '/n/local/scbc/inst/modulefiles/Linux:/n/local/scbc/inst/modulefiles/Core:/n/local/scbc/inst/lmod/lmod/modulefiles/Core::', 'TRANSFAC': '/n/data1/biobase/transfac/current', 'BASH_FUNC_faunwrapseq()': "() { perl -0 -p -e 's/^([^>][^\\n]*)\\n(?!>)(?=.)/$1/gims;' $@\n}", 'BASH_FUNC_xxxxxasdf()': '() { local FINDARG=$1;\n local QSUBARG=$2;\n shift 2;\n find $FINDARG -print0 | xargs -0 -I{} qsub -j y -o /dev/null -terse -shell n -cwd -b y $@\n}', 'BASH_FUNC_famers()': '() { N=$1;\n shift;\n splitter -filter -osformat2 fasta -size ${N} -overlap $((${N} - 1)) "$@" | perl -p -e \'s/>(.*)\\_(\\d+)\\-(\\d+)/>$1:$2-$3/\'\n}', '_LMFILES_': '/n/local/scbc/inst/lmod/lmod/modulefiles/Core/lmod/5.8.5.lua', 'BASH_FUNC_fasplit()': '() { csplit --quiet $@ "%^>%" "/^>/" "{*}"\n}', 'LMOD_SETTARG_CMD': ':', 'LMOD_DIR': '/n/local/scbc/inst/lmod/lmod/libexec', 'BASH_FUNC_nth()': '() { perl -snwe \'BEGIN{our $n||=1; our $m=($n-1) unless defined($m); our $h||=0; die "required: m < n" unless $m < $n; our $sh} print $_ if (($. > $h ) ? (($. -1 - $h) % $n == $m) : ! $sh)\' -- $@\n}', 'BASH_FUNC_exonerateGFF()': "() { perl -ne 'print if ($range = m/^# --- START OF GFF DUMP ---/...m/^# --- END OF GFF DUMP ---/) && ($range ne 1) && ($range !~ /E0$/) && ! m/^#/' $@\n}", 'SELINUX_USE_CURRENT_RANGE': '', 'MODULEPATH_ROOT': '/n/local/scbc/inst/modulefiles', 'HOME': '/home/mec', 'BASH_FUNC_biodbfasta()': '() { path=$1;\n shift;\n perl -M\'Bio::DB::Fasta\' -e "BEGIN {\\$db=Bio::DB::Fasta->new(q{$path})}" "$@"\n}', 'LD_LIBRARY_PATH': '/home/mec/local/lib64:/home/mec/local/lib:/usr/lib64/:', 'LANG': 'en_US.UTF-8', 'DBI_DSN': 'DBI:mysql:test;host=mysql-dev', 'BASH_FUNC_gffseqoffset()': '() { perl -lane \'die "1st GFF column: $F[0] $seqid, $start, $stop" unless (($seqid, $start, $stop) = ($F[0] =~ m/^(\\w+):(\\d+)-(\\d+)$/)); $start -= 1; $F[0] = $seqid; $F[3] += $start; $F[4] += $start;$,="\\t";print @F\' $@\n}', '_ModuleTable_Sz_': '2', 'EASYBUILD_MODULES_TOOL': 'Lmod', 'BASH_FUNC_gffsort()': "() { /home/mec/local/src/coreutils-8.6/src/sort --field-separator='\t' --key=1,1 --key=4,5n $@\n}", 'BASH_FUNC_TFMatID2()': '() { perl -w -MTFBS::DB::LocalTRANSFAC -ne \'BEGIN{our $localdir = shift; our $db = TFBS::DB::LocalTRANSFAC->connect(-accept_conditions => 1, -localdir => $localdir ); our $fmt = shift; our $o = shift;} chomp; open(STDOUT,">","${o}${_}\\.${fmt}") if $o; print STDOUT $db->get_Matrix_by_acc($_,$fmt)->rawprint;\' -- $TRANSFAC/data $@\n}', 'MANPATH': '/n/local/scbc/inst/lmod/lmod/share/man::', 'BASH_FUNC_slice()': '() { perl -snwe \'BEGIN{our $n||=1; our $m=($n) unless defined($m); $m-=1; our $h||=0; die "required: m < n" unless $m < $n; our $sh} print $_ if (($. > $h ) ? (($. -1 - $h) % $n == $m) : ! $sh)\' -- $@\n}', 'BASH_FUNC_flockappend()': '() { local APPENDTO=$1;\n shift;\n flock $APPENDTO --command "cat $@ >> $APPENDTO"\n}', 'BASH_FUNC_gffoffset()': '() { local offset=$1;\n shift;\n local perlcode="@F[3] -= $offset; @F[4] -= $offset;";\n gfftabmap "$perlcode" $@\n}', 'LMOD_CMD': '/n/local/scbc/inst/lmod/lmod/libexec/lmod', 'SELINUX_ROLE_REQUESTED': '', 'BASH_FUNC_module()': '() { eval $($LMOD_CMD bash "$@");\n [ $? = 0 ] && eval $(${LMOD_SETTARG_CMD:-:} -s sh)\n}', 'BASH_FUNC_doi2bibtex()': '() { local doi=$1;\n shift;\n curl -LH \'Accept: application/x-bibtex\' "http://dx.doi.org/${doi}"\n}', 'COLUMNS': '211', 'KDEDIRS': '/usr', 'f': '/home/mec/.bash.d/bash_profile/TDS_SYBASE.sh', 'SSH_TTY': '/dev/pts/1', 'SELINUX_LEVEL_REQUESTED': '', 'BASH_FUNC_pDBI()': '() { pM DBI -s -- -new=connect "$@"\n}', 'BASH_FUNC_fastaSubsetByIndex()': '() { local indices=$1;\n shift;\n perl -MSet::IntSpan -wsne \'BEGIN{$r=Set::IntSpan->new("0,$r");$r->first}; if (m/^>/) {$current++; if ($current > $r->current) {$r->next; $rcurrent = $r->current; last unless $rcurrent}}; print if $rcurrent == $current\' -- -r=${indices}\n}', 'CUPS_SERVER': 'localhost', 'BASH_FUNC_vntigff_fuzztran()': '() { vntifkey=$1;\n pname=$2;\n pattern=$3;\n shift 3;\n fuzztran -filter -auto -rformat gff -pattern $pattern -pname $pname $@ | perl -a -F\'\\t\' -p -s -e \'next unless $#F == 8; $F[2]="match"; $F[8]="label $p ; vntifkey $v"; $_ = join("\\t", @F) . "\\n" \' -- -p=$pname -v=$vntifkey\n}', 'OLDPWD': '/home/mec/project/hpcbios', 'BASH_FUNC_lnsMatching()': '() { local dstPath=$1;\n local srcPath=$2;\n shift 2;\n local findExpr="$@";\n find ${srcPath} -xtype f ${findExpr} -printf \'mkdir -v -p ${dstPath}/%h && cp -v -f -s -t ${dstPath}/%h $(readlink -f %p)\\n\' | sh\n}', 'LINES': '57', 'BASH_FUNC_sortByTabCount()': '() { perl -ap -e \'$_="$#F\\t$_"\' "$@" | sort -nr | cut -f 1 --complement\n}', 'SSH_CLIENT': '10.2.20.57 55665 22', 'LOGNAME': 'mec', 'PATH': '/tmp/tmp3P1tRE/eb_stage1/bin:/n/local/scbc/inst/lmod/lmod/libexec:/n/local/scbc/inst/lua/lua/bin:/home/mec/bin/x86_64:/home/mec/bin/kentCurrent_x86_64:/home/mec/local/bin:/home/mec/local/sratoolkit.2.2.2b-centos_linux64/bin:/home/mec/local/texlive/2013/bin/x86_64-linux:/home/mec/local/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin', 'BASH_FUNC_nthline()': "() { N=$1;\n file=$2;\n sed $N'!d;q' $file\n}", 'BASH_FUNC_dupfind_md5sum()': '() { find $1 -type f -print0 | xargs -0 md5sum | sort | uniq --check-fields=1 --all-repeated | perl -a -n -e \'print "\\n" unless $lastmd5 == $F[0]; $lastmd5 = shift(@F); print "@F\\n"\'\n}', 'TERM': 'dumb', 'LMOD_PREPEND_BLOCK': 'normal', 'LMOD_COLORIZE': 'yes', 'COBBLER_SERVER': 'spacewalk.sgc.loc', 'HISTFILESIZE': '1000', 'INSIDE_EMACS': '24.3.1,comint', 'PLAT': 'linux-x86_64', 'TDSQUERY': 'SQLDEV01', 'DISPLAY': 'localhost:11.0', 'PYTHONSTARTUP': '/home/mec/.pythonrc.py', 'LMOD_sys': 'Linux', 'LOADEDMODULES': 'lmod/5.8.5', 'VISUAL': 'emacsclient -nw', 'HISTCONTROL': 'ignoredups', 'PWD': '/n/local/scbc/build/easyBuild', 'BASH_FUNC_ml()': '() { eval $($LMOD_DIR/ml_cmd "$@")\n}'}, 'module_list': [], 'system_info': {'glibc_version': '2.17', 'python_version': '2.7.5 (default, Jun 17 2014, 18:11:42) ; [GCC 4.8.2 20140120 (Red Hat 4.8.2-16)]', 'cpu_model': 'Intel(R) Xeon(R) CPU E5-2690 0 @ 2.90GHz', 'system_gcc_path': '/usr/bin/gcc', 'os_name': 'centos linux', 'cpu_speed': 2900.0, 'cpu_vendor': 'Intel', 'core_count': 1, 'gcc_version': 'Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.2/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.2-20140120/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.2 20140120 (Red Hat 4.8.2-16) (GCC) ; ', 'hostname': 'catalpa.sgc.loc', 'platform_name': 'x86_64-unknown-linux', 'os_version': '7.0.1406', 'system_python_path': '/usr/bin/python', 'os_type': 'Linux'}, 'easybuild_configuration': ['--allow-modules-tool-mismatch', '--disable-avail-cfgfile-constants', '--disable-avail-easyconfig-constants', '--disable-avail-easyconfig-licenses', '--disable-avail-easyconfig-params', '--disable-avail-easyconfig-templates', '--disable-avail-module-naming-schemes', '--disable-avail-modules-tools', '--disable-avail-repositories', '--buildpath=/tmp/tmp3P1tRE', '--cleanup-builddir', '--config=/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easybuild_config.py', '--debug', '--disable-dry-run', '--disable-dry-run-short', '--disable-experimental', '--disable-force', '--disable-hidden', '--ignore-dirs=.git,.svn', '--disable-ignore-osdeps', '--disable-info', '--installpath=/n/local/scbc/inst/easyBuild', '--disable-job', '--disable-list-toolchains', '--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log', '--logtostdout', '--module-naming-scheme=EasyBuildMNS', '--moduleclasses="[\'base\', \'bio\', \'cae\', \'chem\', \'compiler\', \'data\', \'debugger\', \'devel\', \'geo\', \'ide\', \'lang\', \'lib\', \'math\', \'mpi\', \'numlib\', \'perf\', \'phys\', \'system\', \'toolchain\', \'tools\', \'vis\']"', '--modules-tool=Lmod', '--oldstyleconfig', '--prefix=/tmp/tmp3P1tRE', '--disable-pretend', '--disable-quiet', '--disable-recursive-module-unload', '--disable-regtest', '--repository=FileRepository', '--repositorypath=/tmp/tmp3P1tRE/ebfiles_repo', '--robot-paths=/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs', '--disable-sequential', '--disable-set-gid-bit', '--disable-show-default-moduleclasses', '--disable-skip', '--disable-skip-test-cases', '--sourcepath=/tmp/tmp3P1tRE/sources', '--disable-sticky-bit', '--strict=warn', '--subdir-modules=modules', '--subdir-software=software', '--suffix-modules-path=all', '--tmp-logdir=/tmp', '--toolchain="[\'goalf\', \'1.1.0-no-OFED\']"'], 'time': time.struct_time(tm_year=2015, tm_mon=1, tm_mday=27, tm_hour=23, tm_min=10, tm_sec=53, tm_wday=1, tm_yday=27, tm_isdst=0)}
== 2015-01-27 17:10:53,911 bootstrap_eb.run DEBUG run_cmd: running cmd which eb (in /tmp/tmp3P1tRE)
== 2015-01-27 17:10:53,919 bootstrap_eb.run DEBUG cmd "which eb" exited with exitcode 0 and output:
/tmp/tmp3P1tRE/eb_stage1/bin/eb
== 2015-01-27 17:10:53,919 bootstrap_eb.run DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Also considering installation prefix /tmp/tmp3P1tRE/eb_stage1...
== 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/easyconfigs
== 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyblocks-1.16.1-py2.7.egg/easybuild/easyconfigs
== 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs
== 2015-01-27 17:10:53,919 bootstrap_eb.easyconfig.tools DEBUG Added /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/easybuild/easyconfigs
== 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/lib/python2.7/site-packages/distribute-0.6.34-py2.7.egg/easybuild/easyconfigs
== 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/easybuild/easyconfigs
== 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /n/local/scbc/build/easyBuild/easybuild/easyconfigs
== 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /home/mec/local/lib/python/easybuild/easyconfigs
== 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /n/local/scbc/build/easyBuild/easybuild/easyconfigs
== 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
== 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
== 2015-01-27 17:10:53,920 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
== 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
== 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
== 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
== 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gtk-2.0/easybuild/easyconfigs
== 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
== 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at ../easybuild/easyconfigs
== 2015-01-27 17:10:53,921 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/graphviz/python/easybuild/easyconfigs
== 2015-01-27 17:10:53,922 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/graphviz/python/easybuild/easyconfigs
== 2015-01-27 17:10:53,922 bootstrap_eb.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/tmp3P1tRE/eb_stage1/easybuild/easyconfigs
== 2015-01-27 17:10:53,922 bootstrap_eb.easyconfig.tools DEBUG List of easyconfig files to find: []
== 2015-01-27 17:10:53,922 bootstrap_eb.easyconfig.tools DEBUG Looking for missing easyconfig files (0 left) in /tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_easyconfigs-1.16.1.0-py2.7.egg/easybuild/easyconfigs...
== 2015-01-27 17:10:53,922 bootstrap_eb DEBUG Paths: [('/tmp/tmp3P1tRE/EasyBuild-1.16.1.eb', False)]
== 2015-01-27 17:10:53,924 bootstrap_eb.easyconfig.format.one DEBUG retrieve_blocks_in_spec: derived easyconfig format version: 1.0
== 2015-01-27 17:10:53,924 bootstrap_eb.easyconfig.easyconfig DEBUG Processing easyconfig /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb
== 2015-01-27 17:10:53,925 bootstrap_eb.EasyConfig INFO Obtained list of valid module classes: ['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis']
== 2015-01-27 17:10:53,934 bootstrap_eb.easyconfig.easyconfig INFO Derived full easyblock module path for EB_EasyBuildMeta: easybuild.easyblocks.easybuildmeta
== 2015-01-27 17:10:53,935 bootstrap_eb.easyconfig.easyconfig INFO Successfully obtained class 'EB_EasyBuildMeta' for easyblock 'EB_EasyBuildMeta' (software name 'EasyBuild')
== 2015-01-27 17:10:53,935 bootstrap_eb.EasyConfig DEBUG Converting extra_options value '[('runtest', [True, 'Run unit tests.', (1, 'easyblock-specific')]), ('options', [{}, 'Dictionary with extension options.', (1, 'easyblock-specific')])]' of type '<class 'easybuild.tools.deprecated.eb_2_0.ExtraOptionsDeprecatedReturnValue'>' to a dict
== 2015-01-27 17:10:53,935 bootstrap_eb.EasyConfig DEBUG List of valid stops obtained: ['fetch', 'ready', 'source', 'patch', 'prepare', 'configure', 'build', 'test', 'install', 'extensions', 'package', 'postproc', 'sanitycheck', 'cleanup', 'module', 'testcases']
== 2015-01-27 17:10:53,935 bootstrap_eb.EasyConfig DEBUG Obtained specs dict {'toolchain': {'version': '1.1.0-no-OFED', 'name': 'goalf'}, 'toolchain_version': '1.1.0-no-OFED', 'toolchain_name': 'goalf'}
== 2015-01-27 17:10:53,936 bootstrap_eb.EasyConfigParser DEBUG Process filename /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb with get function (<function read_file at 0x24f8cf8>, ('/tmp/tmp3P1tRE/EasyBuild-1.16.1.eb',)), set function (<function write_file at 0x24f8ed8>, ('/tmp/tmp3P1tRE/EasyBuild-1.16.1.eb', None))
== 2015-01-27 17:10:53,936 bootstrap_eb.EasyConfigParser DEBUG No version found, using default 1.0
== 2015-01-27 17:10:53,938 bootstrap_eb.FormatOneZero DEBUG No section found.
== 2015-01-27 17:10:53,938 bootstrap_eb.FormatOneZero DEBUG Found header
== 2015-01-27 17:10:53,939 bootstrap_eb.FormatOneZero DEBUG pyheader initial global_vars {'OS_NAME': 'centos linux', 'Unknown': <easybuild.framework.easyconfig.licenses.LicenseUnknown object at 0x26c6bd0>, 'GPLv2': <easybuild.framework.easyconfig.licenses.LicenseGPLv2 object at 0x26c6c90>, 'GPLv3': <easybuild.framework.easyconfig.licenses.LicenseGPLv3 object at 0x26c6b50>, 'SOURCE_TAR_XZ': '%(name)s-%(version)s.tar.xz', 'SOURCELOWER_GTGZ': '%(namelower)s-%(version)s.gtgz', 'SOURCE_TAR_GZ': '%(name)s-%(version)s.tar.gz', 'SOURCELOWER_TXZ': '%(namelower)s-%(version)s.txz', 'Libpng': <easybuild.framework.easyconfig.licenses.LicenseLibpng object at 0x26c6cd0>, 'GNU_SAVANNAH_SOURCE': 'http://download.savannah.gnu.org/releases/%(namelower)s', 'PYPI_LOWER_SOURCE': 'http://pypi.python.org/packages/source/%(nameletterlower)s/%(namelower)s', 'SOURCELOWER_ZIP': '%(namelower)s-%(version)s.zip', 'shared_lib_ext': 'so', 'SOURCELOWER_TAR_BZ2': '%(namelower)s-%(version)s.tar.bz2', 'GOOGLECODE_SOURCE': 'http://%(namelower)s.googlecode.com/files', 'SOURCE_ZIP': '%(name)s-%(version)s.zip', 'XORG_UTIL_SOURCE': 'http://xorg.freedesktop.org/archive/individual/util/', 'BITBUCKET_DOWNLOADS': 'http://bitbucket.org/%(namelower)s/%(namelower)s/downloads', 'SOURCELOWER_TAR_GZ': '%(namelower)s-%(version)s.tar.gz', 'FTPGNOME_SOURCE': 'http://ftp.gnome.org/pub/GNOME/sources/%(namelower)s/%(version_major_minor)s', 'BITBUCKET_SOURCE': 'http://bitbucket.org/%(namelower)s/%(namelower)s/get', 'SOURCE_XZ': '%(name)s-%(version)s.xz', 'PYPI_SOURCE': 'http://pypi.python.org/packages/source/%(nameletter)s/%(name)s', 'VeryRestrictive': <easybuild.framework.easyconfig.licenses.VeryRestrictive object at 0x26c6d10>, 'SYS_PYTHON_VERSION': '2.7.5', 'SOURCE_TB2': '%(name)s-%(version)s.tb2', 'SOURCE_TAR_BZ2': '%(name)s-%(version)s.tar.bz2', 'R_SOURCE': 'http://cran.r-project.org/src/base/R-%(version_major)s', 'APACHE_SOURCE': 'http://archive.apache.org/dist/%(namelower)s', 'SOURCELOWER_XZ': '%(namelower)s-%(version)s.xz', 'GNU_SOURCE': 'http://ftpmirror.gnu.org/%(namelower)s', 'XORG_LIB_SOURCE': 'http://xorg.freedesktop.org/archive/individual/lib/', 'SOURCELOWER_TAR': '%(namelower)s-%(version)s.tar', 'SOURCE_GTGZ': '%(name)s-%(version)s.gtgz', 'OS_VERSION': '7.0.1406', 'SOURCE_TBZ2': '%(name)s-%(version)s.tbz2', 'GCC': <easybuild.framework.easyconfig.licenses.LicenseGCC object at 0x26c6c50>, 'OS_TYPE': 'Linux', 'SOURCEFORGE_SOURCE': 'http://download.sourceforge.net/%(namelower)s', 'SOURCELOWER_TB2': '%(namelower)s-%(version)s.tb2', 'CRAN_SOURCE': 'http://cran.r-project.org/src/contrib', 'SOURCE_TGZ': '%(name)s-%(version)s.tgz', 'SOURCELOWER_TBZ2': '%(namelower)s-%(version)s.tbz2', 'XORG_PROTO_SOURCE': 'http://xorg.freedesktop.org/archive/individual/proto/', 'SHLIB_EXT': 'so', 'SOURCELOWER_TAR_XZ': '%(namelower)s-%(version)s.tar.xz', 'SOURCE_TXZ': '%(name)s-%(version)s.txz', 'XORG_DATA_SOURCE': 'http://xorg.freedesktop.org/archive/individual/data/', 'LAUNCHPAD_SOURCE': 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/%(version)s/+download/', 'SOURCELOWER_TGZ': '%(namelower)s-%(version)s.tgz', 'GCCOld': <easybuild.framework.easyconfig.licenses.LicenseGCCOld object at 0x26c6c10>, 'XORG_XCB_SOURCE': 'http://xorg.freedesktop.org/archive/individual/xcb/', 'SOURCE_TAR': '%(name)s-%(version)s.tar'}
== 2015-01-27 17:10:53,939 bootstrap_eb.FormatOneZero DEBUG pyheader initial local_vars {}
== 2015-01-27 17:10:53,939 bootstrap_eb.FormatOneZero DEBUG pyheader text being exec'ed: easyblock = 'EB_EasyBuildMeta'
name = 'EasyBuild'
version = '1.16.1'
homepage = 'http://hpcugent.github.com/easybuild/'
description = """EasyBuild is a software build and installation framework
written in Python that allows you to install software in a structured,
repeatable and robust way."""
toolchain = {'name': 'dummy', 'version': 'dummy'}
source_urls = [
'http://pypi.python.org/packages/source/e/easybuild-framework/',
'http://pypi.python.org/packages/source/e/easybuild-easyblocks/',
'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/',
]
# order matters a lot, to avoid having dependencies auto-resolved (--no-deps easy_install option doesn't work?)
sources = [
'easybuild-framework-1.16.1.tar.gz',
'easybuild-easyblocks-1.16.1.tar.gz',
'easybuild-easyconfigs-1.16.1.0.tar.gz',
]
# EasyBuild is a (set of) Python packages, so it depends on Python
# usually, we want to use the system Python, so no actual Python dependency is listed
allow_system_deps = [('Python', SYS_PYTHON_VERSION)]
== 2015-01-27 17:10:53,939 bootstrap_eb.FormatOneZero DEBUG pyheader final global_vars {'OS_NAME': 'centos linux', 'Unknown': <easybuild.framework.easyconfig.licenses.LicenseUnknown object at 0x26c6bd0>, 'GPLv2': <easybuild.framework.easyconfig.licenses.LicenseGPLv2 object at 0x26c6c90>, 'GPLv3': <easybuild.framework.easyconfig.licenses.LicenseGPLv3 object at 0x26c6b50>, 'SOURCE_TAR_XZ': '%(name)s-%(version)s.tar.xz', 'SOURCELOWER_GTGZ': '%(namelower)s-%(version)s.gtgz', 'SOURCE_TAR_GZ': '%(name)s-%(version)s.tar.gz', 'SOURCELOWER_TXZ': '%(namelower)s-%(version)s.txz', 'Libpng': <easybuild.framework.easyconfig.licenses.LicenseLibpng object at 0x26c6cd0>, 'GNU_SAVANNAH_SOURCE': 'http://download.savannah.gnu.org/releases/%(namelower)s', 'PYPI_LOWER_SOURCE': 'http://pypi.python.org/packages/source/%(nameletterlower)s/%(namelower)s', 'SOURCELOWER_ZIP': '%(namelower)s-%(version)s.zip', 'shared_lib_ext': 'so', 'SOURCELOWER_TAR_BZ2': '%(namelower)s-%(version)s.tar.bz2', 'GOOGLECODE_SOURCE': 'http://%(namelower)s.googlecode.com/files', 'SOURCE_ZIP': '%(name)s-%(version)s.zip', 'XORG_UTIL_SOURCE': 'http://xorg.freedesktop.org/archive/individual/util/', 'BITBUCKET_DOWNLOADS': 'http://bitbucket.org/%(namelower)s/%(namelower)s/downloads', 'SOURCELOWER_TAR_GZ': '%(namelower)s-%(version)s.tar.gz', 'FTPGNOME_SOURCE': 'http://ftp.gnome.org/pub/GNOME/sources/%(namelower)s/%(version_major_minor)s', 'BITBUCKET_SOURCE': 'http://bitbucket.org/%(namelower)s/%(namelower)s/get', 'SOURCE_XZ': '%(name)s-%(version)s.xz', 'PYPI_SOURCE': 'http://pypi.python.org/packages/source/%(nameletter)s/%(name)s', 'VeryRestrictive': <easybuild.framework.easyconfig.licenses.VeryRestrictive object at 0x26c6d10>, 'SYS_PYTHON_VERSION': '2.7.5', 'SOURCE_TB2': '%(name)s-%(version)s.tb2', 'SOURCE_TAR_BZ2': '%(name)s-%(version)s.tar.bz2', 'R_SOURCE': 'http://cran.r-project.org/src/base/R-%(version_major)s', 'APACHE_SOURCE': 'http://archive.apache.org/dist/%(namelower)s', 'SOURCELOWER_XZ': '%(namelower)s-%(version)s.xz', 'GNU_SOURCE': 'http://ftpmirror.gnu.org/%(namelower)s', '__builtins__': {'bytearray': <type 'bytearray'>, 'IndexError': <type 'exceptions.IndexError'>, 'all': <built-in function all>, 'help': Type help() for interactive help, or help(object) for help about object., 'vars': <built-in function vars>, 'SyntaxError': <type 'exceptions.SyntaxError'>, 'unicode': <type 'unicode'>, 'UnicodeDecodeError': <type 'exceptions.UnicodeDecodeError'>, 'memoryview': <type 'memoryview'>, 'isinstance': <built-in function isinstance>, 'copyright': Copyright (c) 2001-2013 Python Software Foundation.
All Rights Reserved.
Copyright (c) 2000 BeOpen.com.
All Rights Reserved.
Copyright (c) 1995-2001 Corporation for National Research Initiatives.
All Rights Reserved.
Copyright (c) 1991-1995 Stichting Mathematisch Centrum, Amsterdam.
All Rights Reserved., 'NameError': <type 'exceptions.NameError'>, 'BytesWarning': <type 'exceptions.BytesWarning'>, 'dict': <type 'dict'>, 'input': <built-in function input>, 'oct': <built-in function oct>, 'bin': <built-in function bin>, 'SystemExit': <type 'exceptions.SystemExit'>, 'StandardError': <type 'exceptions.StandardError'>, 'format': <built-in function format>, 'repr': <built-in function repr>, 'sorted': <built-in function sorted>, 'False': False, 'RuntimeWarning': <type 'exceptions.RuntimeWarning'>, 'list': <type 'list'>, 'iter': <built-in function iter>, 'reload': <built-in function reload>, 'Warning': <type 'exceptions.Warning'>, '__package__': None, 'round': <built-in function round>, 'dir': <built-in function dir>, 'cmp': <built-in function cmp>, 'set': <type 'set'>, 'bytes': <type 'str'>, 'reduce': <built-in function reduce>, 'intern': <built-in function intern>, 'issubclass': <built-in function issubclass>, 'Ellipsis': Ellipsis, 'EOFError': <type 'exceptions.EOFError'>, 'locals': <built-in function locals>, 'BufferError': <type 'exceptions.BufferError'>, 'slice': <type 'slice'>, 'FloatingPointError': <type 'exceptions.FloatingPointError'>, 'sum': <built-in function sum>, 'getattr': <built-in function getattr>, 'abs': <built-in function abs>, 'exit': Use exit() or Ctrl-D (i.e. EOF) to exit, 'print': <built-in function print>, 'True': True, 'FutureWarning': <type 'exceptions.FutureWarning'>, 'ImportWarning': <type 'exceptions.ImportWarning'>, 'None': None, 'hash': <built-in function hash>, 'ReferenceError': <type 'exceptions.ReferenceError'>, 'len': <built-in function len>, 'credits': Thanks to CWI, CNRI, BeOpen.com, Zope Corporation and a cast of thousands
for supporting Python development. See www.python.org for more information., 'frozenset': <type 'frozenset'>, '__name__': '__builtin__', 'ord': <built-in function ord>, 'super': <type 'super'>, 'TypeError': <type 'exceptions.TypeError'>, 'license': See http://www.python.org/2.7/license.html, 'KeyboardInterrupt': <type 'exceptions.KeyboardInterrupt'>, 'UserWarning': <type 'exceptions.UserWarning'>, 'filter': <built-in function filter>, 'range': <built-in function range>, 'staticmethod': <type 'staticmethod'>, 'SystemError': <type 'exceptions.SystemError'>, 'BaseException': <type 'exceptions.BaseException'>, 'pow': <built-in function pow>, 'RuntimeError': <type 'exceptions.RuntimeError'>, 'float': <type 'float'>, 'MemoryError': <type 'exceptions.MemoryError'>, 'StopIteration': <type 'exceptions.StopIteration'>, 'globals': <built-in function globals>, 'divmod': <built-in function divmod>, 'enumerate': <type 'enumerate'>, 'apply': <built-in function apply>, 'LookupError': <type 'exceptions.LookupError'>, 'open': <built-in function open>, 'quit': Use quit() or Ctrl-D (i.e. EOF) to exit, 'basestring': <type 'basestring'>, 'UnicodeError': <type 'exceptions.UnicodeError'>, 'zip': <built-in function zip>, 'hex': <built-in function hex>, 'long': <type 'long'>, 'next': <built-in function next>, 'ImportError': <type 'exceptions.ImportError'>, 'chr': <built-in function chr>, 'xrange': <type 'xrange'>, 'type': <type 'type'>, '__doc__': "Built-in functions, exceptions, and other objects.\n\nNoteworthy: None is the `nil' object; Ellipsis represents `...' in slices.", 'Exception': <type 'exceptions.Exception'>, 'tuple': <type 'tuple'>, 'UnicodeTranslateError': <type 'exceptions.UnicodeTranslateError'>, 'reversed': <type 'reversed'>, 'UnicodeEncodeError': <type 'exceptions.UnicodeEncodeError'>, 'IOError': <type 'exceptions.IOError'>, 'hasattr': <built-in function hasattr>, 'delattr': <built-in function delattr>, 'setattr': <built-in function setattr>, 'raw_input': <built-in function raw_input>, 'SyntaxWarning': <type 'exceptions.SyntaxWarning'>, 'compile': <built-in function compile>, 'ArithmeticError': <type 'exceptions.ArithmeticError'>, 'str': <type 'str'>, 'property': <type 'property'>, 'GeneratorExit': <type 'exceptions.GeneratorExit'>, 'int': <type 'int'>, '__import__': <built-in function __import__>, 'KeyError': <type 'exceptions.KeyError'>, 'coerce': <built-in function coerce>, 'PendingDeprecationWarning': <type 'exceptions.PendingDeprecationWarning'>, 'file': <type 'file'>, 'EnvironmentError': <type 'exceptions.EnvironmentError'>, 'unichr': <built-in function unichr>, 'id': <built-in function id>, 'OSError': <type 'exceptions.OSError'>, 'DeprecationWarning': <type 'exceptions.DeprecationWarning'>, 'min': <built-in function min>, 'UnicodeWarning': <type 'exceptions.UnicodeWarning'>, 'execfile': <built-in function execfile>, 'any': <built-in function any>, 'complex': <type 'complex'>, 'bool': <type 'bool'>, 'ValueError': <type 'exceptions.ValueError'>, 'NotImplemented': NotImplemented, 'map': <built-in function map>, 'buffer': <type 'buffer'>, 'max': <built-in function max>, 'object': <type 'object'>, 'TabError': <type 'exceptions.TabError'>, 'callable': <built-in function callable>, 'ZeroDivisionError': <type 'exceptions.ZeroDivisionError'>, 'eval': <built-in function eval>, '__debug__': True, 'IndentationError': <type 'exceptions.IndentationError'>, 'AssertionError': <type 'exceptions.AssertionError'>, 'classmethod': <type 'classmethod'>, 'UnboundLocalError': <type 'exceptions.UnboundLocalError'>, 'NotImplementedError': <type 'exceptions.NotImplementedError'>, 'AttributeError': <type 'exceptions.AttributeError'>, 'OverflowError': <type 'exceptions.OverflowError'>}, 'XORG_LIB_SOURCE': 'http://xorg.freedesktop.org/archive/individual/lib/', 'SOURCELOWER_TAR': '%(namelower)s-%(version)s.tar', 'SOURCE_GTGZ': '%(name)s-%(version)s.gtgz', 'OS_VERSION': '7.0.1406', 'SOURCE_TBZ2': '%(name)s-%(version)s.tbz2', 'GCC': <easybuild.framework.easyconfig.licenses.LicenseGCC object at 0x26c6c50>, 'OS_TYPE': 'Linux', 'SOURCEFORGE_SOURCE': 'http://download.sourceforge.net/%(namelower)s', 'SOURCELOWER_TB2': '%(namelower)s-%(version)s.tb2', 'CRAN_SOURCE': 'http://cran.r-project.org/src/contrib', 'SOURCE_TGZ': '%(name)s-%(version)s.tgz', 'SOURCELOWER_TBZ2': '%(namelower)s-%(version)s.tbz2', 'XORG_PROTO_SOURCE': 'http://xorg.freedesktop.org/archive/individual/proto/', 'SHLIB_EXT': 'so', 'SOURCELOWER_TAR_XZ': '%(namelower)s-%(version)s.tar.xz', 'SOURCE_TXZ': '%(name)s-%(version)s.txz', 'XORG_DATA_SOURCE': 'http://xorg.freedesktop.org/archive/individual/data/', 'LAUNCHPAD_SOURCE': 'https://launchpad.net/%(namelower)s/%(version_major_minor)s.x/%(version)s/+download/', 'SOURCELOWER_TGZ': '%(namelower)s-%(version)s.tgz', 'GCCOld': <easybuild.framework.easyconfig.licenses.LicenseGCCOld object at 0x26c6c10>, 'XORG_XCB_SOURCE': 'http://xorg.freedesktop.org/archive/individual/xcb/', 'SOURCE_TAR': '%(name)s-%(version)s.tar'}
== 2015-01-27 17:10:53,948 bootstrap_eb.FormatOneZero DEBUG pyheader final local_vars {'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'EasyBuild', 'allow_system_deps': [('Python', '2.7.5')], 'sources': ['easybuild-framework-1.16.1.tar.gz', 'easybuild-easyblocks-1.16.1.tar.gz', 'easybuild-easyconfigs-1.16.1.0.tar.gz'], 'version': '1.16.1', 'source_urls': ['http://pypi.python.org/packages/source/e/easybuild-framework/', 'http://pypi.python.org/packages/source/e/easybuild-easyblocks/', 'http://pypi.python.org/packages/source/e/easybuild-easyconfigs/'], 'easyblock': 'EB_EasyBuildMeta', 'homepage': 'http://hpcugent.github.com/easybuild/', 'description': 'EasyBuild is a software build and installation framework\nwritten in Python that allows you to install software in a structured,\nrepeatable and robust way.'}
== 2015-01-27 17:10:53,948 bootstrap_eb.FormatOneZero DEBUG No docstring found in local_vars
== 2015-01-27 17:10:53,948 bootstrap_eb.FormatOneZero DEBUG Set copy of specs {'toolchain': {'version': '1.1.0-no-OFED', 'name': 'goalf'}, 'toolchain_version': '1.1.0-no-OFED', 'toolchain_name': 'goalf'}
== 2015-01-27 17:10:53,948 bootstrap_eb.FormatOneZero ERROR EasyBuild crashed with an error (at easybuild/framework/easyconfig/format/one.py:79 in get_config_dict): Requested toolchain name goalf not available, only dummy
== 2015-01-27 17:10:53,948 bootstrap_eb.easyconfig.easyconfig ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:117 in exception): EasyBuild encountered an exception (at easybuild/framework/easyconfig/easyconfig.py:937 in process_easyconfig): Failed to process easyconfig /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb:
EasyBuild crashed with an error (at easybuild/framework/easyconfig/format/one.py:79 in get_config_dict): Requested toolchain name goalf not available, only dummy
Traceback (most recent call last):
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py", line 934, in process_easyconfig
ec = EasyConfig(spec, build_specs=build_specs, validate=validate, hidden=hidden)
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py", line 203, in __init__
self.parse()
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py", line 263, in parse
local_vars = parser.get_config_dict()
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/parser.py", line 148, in get_config_dict
return self._formatter.get_config_dict()
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/format/one.py", line 79, in get_config_dict
self.log.error('Requested toolchain name %s not available, only %s' % (spec_tc_name, tc_name))
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/tools/build_log.py", line 109, in error
raise EasyBuildError(newMsg)
EasyBuildError: 'EasyBuild crashed with an error (at easybuild/framework/easyconfig/format/one.py:79 in get_config_dict): Requested toolchain name goalf not available, only dummy'
Traceback (most recent call last):
File "bootstrap_eb.py", line 584, in <module>
main()
File "bootstrap_eb.py", line 411, in main
stage2(tmpdir, versions, install_path)
File "bootstrap_eb.py", line 360, in stage2
easybuild_main()
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/main.py", line 251, in main
easyconfigs, generated_ecs = parse_easyconfigs(paths)
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/tools.py", line 315, in parse_easyconfigs
ecs = process_easyconfig(ec_file, **kwargs)
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/framework/easyconfig/easyconfig.py", line 937, in process_easyconfig
_log.exception(msg)
File "/tmp/tmp3P1tRE/eb_stage1/lib/python2.7/site-packages/easybuild_framework-1.16.1-py2.7.egg/easybuild/tools/build_log.py", line 120, in exception
raise EasyBuildError(newMsg)
easybuild.tools.build_log.EasyBuildError: 'EasyBuild encountered an exception (at easybuild/framework/easyconfig/easyconfig.py:937 in process_easyconfig): Failed to process easyconfig /tmp/tmp3P1tRE/EasyBuild-1.16.1.eb:\nEasyBuild crashed with an error (at easybuild/framework/easyconfig/format/one.py:79 in get_config_dict): Requested toolchain name goalf not available, only dummy'
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