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@maleadt
Created May 4, 2020 13:45
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# This file is machine-generated - editing it directly is not advised
[[AbstractFFTs]]
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[deps]
BlackBoxOptim = "a134a8b2-14d6-55f6-9291-3336d3ab0209"
CuArrays = "3a865a2d-5b23-5a0f-bc46-62713ec82fae"
DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
DiffEqFlux = "aae7a2af-3d4f-5e19-a356-7da93b79d9d0"
DiffEqJump = "c894b116-72e5-5b58-be3c-e6d8d4ac2b12"
DiffEqMonteCarlo = "78ddff82-25fc-5f2b-89aa-309469cbf16f"
DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c"
Gadfly = "c91e804a-d5a3-530f-b6f0-dfbca275c004"
HDF5 = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f"
Images = "916415d5-f1e6-5110-898d-aaa5f9f070e0"
JLD = "4138dd39-2aa7-5051-a626-17a0bb65d9c8"
Juno = "e5e0dc1b-0480-54bc-9374-aad01c23163d"
KernelDensity = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b"
LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255"
MAT = "23992714-dd62-5051-b70f-ba57cb901cac"
Metalhead = "dbeba491-748d-5e0e-a39e-b530a07fa0cc"
Optim = "429524aa-4258-5aef-a3af-852621145aeb"
OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
QuadGK = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd"
StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
SteadyStateDiffEq = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f"
StochasticDiffEq = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0"
Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
using DifferentialEquations, DiffEqFlux, OrdinaryDiffEq, Flux, StatsBase, LinearAlgebra, CuArrays
CuArrays.allowscalar(false)
u0 = Float32[2.; 0.]
datasize = 100
tspan = (0.0f0,1.0f0)
function trueODEfunc(du,u,p,t)
true_A = [-0.1 2.0; -2.0 -0.1]
du .= ((u.^3)'true_A)'
end
t = range(tspan[1],tspan[2],length=datasize)
prob = ODEProblem(trueODEfunc,u0,tspan)
ode_data = Array(solve(prob,Tsit5(),saveat=t)) |> gpu
f = Chain(Dense(2,1000, tanh), Dense(1000,2)) |> gpu # using FastChain/FastDense in this example throws a "scalar getindex is disallowed" error
g = Chain(Dense(2,100), GRU(100,100), Dense(100,2)) |> gpu
p1, fre = Flux.destructure(f)
p2, gre = Flux.destructure(g)
θ = Float32.([p1;p2])
n_ode = NeuralODE(f, tspan, Tsit5(), saveat=t)
function loss_n_ode(p)
z0 = gre(p[length(p1)+1:end])(ode_data)[:, end]
pred = Array(n_ode(z0, p[1:length(p1)]))
loss = sum(abs2,ode_data .- pred)
loss,pred
end
cb = function (p,l,pred;doplot=false) #callback function to observe training
return false
end
res1 = DiffEqFlux.sciml_train(loss_n_ode, θ, ADAM(0.05), cb = cb, maxiters = 300)
cb(res1.minimizer,loss_n_ode(res1.minimizer)...;doplot=false)
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