Aaron MacNeil mamacneil

## Arctic.ipynb

      
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                mamacneil
                / Arctic.ipynb
            
            
              Created
              July 6, 2022 09:29
            
              
                PyMC (4.0) implementation of classic compositional dataset in both Dirichlet and softmax approaches
              
          
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## GammaGLM_pymc3.ipynb

      
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                mamacneil
                / GammaGLM_pymc3.ipynb
            
            
              Created
              April 9, 2021 14:32
            
              
                Gamma GLM in PyMC3
              
          
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## skittles.ipynb

      
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                mamacneil
                / skittles.ipynb
            
            
              Created
              January 28, 2021 00:53
            
              
                Dirichlet-multinomial model implementation from Isaac Slavitt
              
          
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## UKHouseOfCommons.csv

          
            constituency
            county
            y1
            y2
            y1lag
            y2lag
            coninc
            labinc
            libinc
            v1
            v2
            v3

            
              Barrow & Furness
              Cumbria
              1.3286
              1.4732
              1.182
              1.0142
              1
              0
              0
              0.4131
              0.4774
              0.1094

            
              Berwick-upon-Tweed
              Northumberland
              -0.3032
              -0.6634
              -0.5689
              -1.0906
              0
              0
              1
              0.3277
              0.2286
              0.4437

            
              Bishop Auckland
              Durham
              0.5598
              1.0113
              0.7052
              1.0258
              0
              1
              0
              0.3183
              0.4999
              0.1818

            
              Durham City of
              Durham
              0.0978
              0.9092
              -0.4139
              0.3037
              0
              1
              0
              0.2405
              0.5414
              0.2181

            
              Copeland
              Cumbria
              1.7351
              1.8508
              1.5507
              1.6453
              0
              1
              0
              0.435
              0.4883
              0.0767

            
              Easington
              Durham
              0.4546
              1.9246
              0.0408
              1.4702
              0
              1
              0
              0.1671
              0.7268
              0.1061

            
              Hexham
              Northumberland
              0.8811
              0.1085
              0.4472
              -0.5683
              0
              0
              0
              0.533
              0.2461
              0.2208

            
              Langbaurgh
              Cleveland
              1.3717
              1.3182
              0.7418
              0.6582
              0
              1
              0
              0.4542
              0.4306
              0.1152

            
              Durham North
              Durham
              0.4855
              1.365
              -0.0637
              0.9126
              0
              1
              0
              0.2484
              0.5987
              0.1529

## dyads.ipynb

      
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                mamacneil
                / dyads.ipynb
            
            
              Created
              January 28, 2021 00:45
            
              
                Implementation of intercept-only dyads model from McElreath Ch14/Koester and Leckie 2014
              
          
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## FishBase_LH.ipynb

      
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                mamacneil
                / FishBase_LH.ipynb
            
            
              Last active
              September 4, 2020 09:01
            
              
                Grab K and age at maturity (tm) values from Fishbase Life History Page
              
          
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## IntroBayes.ipynb

      
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                mamacneil
                / IntroBayes.ipynb
            
            
              Last active
              November 24, 2017 17:45
            
              
                Code to support Thinking Bayesian lecture
              
          
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## Forced_PyMC2
{
	"cells": [
		{
			"cell_type": "markdown",
			"metadata": {
			},
			"source": [
				"# Bayesian implementation of forced-response model in PyMC3\n",
				"\n",
				"### Based on Blair et al. 2015\n"

## GammaGLM.ipynb

      
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                mamacneil
                / GammaGLM.ipynb
            
            
              Last active
              April 2, 2021 14:32
            
              
                Example of a Gamma GLM in PyMC2
              
          
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constituency	county	y1	y2	y1lag	y2lag	coninc	labinc	libinc	v1	v2	v3
Barrow & Furness	Cumbria	1.3286	1.4732	1.182	1.0142	1	0	0	0.4131	0.4774	0.1094
Berwick-upon-Tweed	Northumberland	-0.3032	-0.6634	-0.5689	-1.0906	0	0	1	0.3277	0.2286	0.4437
Bishop Auckland	Durham	0.5598	1.0113	0.7052	1.0258	0	1	0	0.3183	0.4999	0.1818
Durham City of	Durham	0.0978	0.9092	-0.4139	0.3037	0	1	0	0.2405	0.5414	0.2181
Copeland	Cumbria	1.7351	1.8508	1.5507	1.6453	0	1	0	0.435	0.4883	0.0767
Easington	Durham	0.4546	1.9246	0.0408	1.4702	0	1	0	0.1671	0.7268	0.1061
Hexham	Northumberland	0.8811	0.1085	0.4472	-0.5683	0	0	0	0.533	0.2461	0.2208
Langbaurgh	Cleveland	1.3717	1.3182	0.7418	0.6582	0	1	0	0.4542	0.4306	0.1152
Durham North	Durham	0.4855	1.365	-0.0637	0.9126	0	1	0	0.2484	0.5987	0.1529
	{
	"cells": [
	{
	"cell_type": "markdown",
	"metadata": {
	},
	"source": [
	"# Bayesian implementation of forced-response model in PyMC3\n",
	"\n",
	"### Based on Blair et al. 2015\n"