README.md

Connect to OMERO, passing parameters as URL query parameters

This notebook requires the parameters host, username, passwd

If you already have a notebook opened you can pass the parameters by adding this query string to the URL in your browser:

?host='HOST'&username='USERNAME'&passwd='PASSWD'

or

?host='HOST'&username='USERNAME'&passwd='PASSWD'&autorun=true

to automatically run the whole notebook.

If you are launching the notebook on mybinder you can pass the parameters in the launch URL but they need to be URL escaped:

https://mybinder.org/v2/gist/manics/6c80abdef351342dce45e506ff8d32f2/master?urlpath=notebooks%2Fomero-websocket.ipynb%3Fhost%3D'HOST'%26username%3D'USERNAME'%26passwd%3D'PASSWD'%26autorun%3Dtrue

environment.yml

name: jupyter
channels:
  - defaults
  - manics
dependencies:
  - pip
  - python=2.7
  - zeroc-ice-python=3.6.5
  - pip:
      # https://github.com/ome/omero-py/pull/18
      - https://github.com/manics/omero-py/archive/ccdb6053f749ffcc9cf7d3e438236f3b625a56a3.zip
      # Doesn't work here, needs to be installed into a different environment
      # - jupyter-notebookparams

omero-websocket.ipynb

postBuild

pip install jupyter-notebookparams==0.0.3
jupyter nbextension install --py jupyter_notebookparams --user
jupyter nbextension enable --py jupyter_notebookparams --user