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manics / README.md
Last active September 26, 2025 12:08
HDR UK conference 2025: A standard architecture for TREs: why is it important in a federated world?

HDR UK conference 2025: A standard architecture for TREs: why is it important in a federated world?

URLs and supporting information

K8TRE: An open-source Kubernetes native TRE

https://docs.k8tre.org/

SATRE Centric Control Alignment Table for Trusted Research Environments

https://zenodo.org/records/16837077

pypi-timemachine
emoji
pyjokes
@manics
manics / README.md
Created August 13, 2025 14:15
Hugo example
@manics
manics / extract-tag-changelog.py
Last active August 4, 2025 18:19
Extract relevant sections of a CHANGELOG for a given version
#!/usr/bin/env python
from argparse import ArgumentParser
from base64 import b64decode
from github import Github, GithubException
import os
import re
# If None then unauthenticated requests are made (may hit API limits)
GITHUB_TOKEN = os.getenv("GITHUB_TOKEN")
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name: example-environment
channels:
- conda-forge
dependencies:
- python=3.12
- uv
- pip
- pip:
- juvio
name: gmft
channels:
- conda-forge
dependencies:
- pytorch
- pip
- pip:
- gmft
@manics
manics / omop-cdm-postgres.sh
Created March 20, 2025 17:51
OMOP CDM PostgreSQL database with example data
#!/bin/sh
# First run postgres, e.g.
# nerdctl run -it --rm -p5432:5432 -e POSTGRES_PASSWORD=password docker.io/library/postgres:17
set -eu
# Postgres connection details
PG_HOST=127.0.0.1
PG_USER=postgres
PG_SCHEMA=public
@manics
manics / k3s_gVisor_install.md
Created March 15, 2025 17:48 — forked from Frichetten/k3s_gVisor_install.md
How to install and configure gVisor for K3s

How to install and configure gVisor for K3s

This gist is a quick explainer on how to install and configure gVisor on K3s. There is a sort of hidden gotcha if you aren't reading the documentation thoroughly. If you already have a K3s cluster setup skip to the appropriate section below.

Install K3s

Install K3s as described in the documentation.

Install gVisor