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October 26, 2015 11:59
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| /data/reference/escherichia_coli_NCBI.fa /data/simulated_datasets/ecolli_15x/escherichia_coli_NCBI-e0.00/layout_20151026_115352/dnadiff_results/../contigs_fast.fasta | |
| NUCMER | |
| [REF] [QRY] | |
| [Sequences] | |
| TotalSeqs 1 1 | |
| AlignedSeqs 1(100.00%) 1(100.00%) | |
| UnalignedSeqs 0(0.00%) 0(0.00%) | |
| [Bases] | |
| TotalBases 4639675 3701270 | |
| AlignedBases 3684104(79.40%) 3699387(99.95%) | |
| UnalignedBases 955571(20.60%) 1883(0.05%) | |
| [Alignments] | |
| 1-to-1 8 8 | |
| TotalLength 3683852 3725143 | |
| AvgLength 460481.50 465642.88 | |
| AvgIdentity 95.36 95.36 | |
| M-to-M 45 45 | |
| TotalLength 3721769 3763211 | |
| AvgLength 82705.98 83626.91 | |
| AvgIdentity 95.35 95.35 | |
| [Feature Estimates] | |
| Breakpoints 90 89 | |
| Relocations 1 1 | |
| Translocations 0 0 | |
| Inversions 3 3 | |
| Insertions 68 2 | |
| InsertionSum 993753 1883 | |
| InsertionAvg 14614.01 941.50 | |
| TandemIns 2 0 | |
| TandemInsSum 265 0 | |
| TandemInsAvg 132.50 0.00 | |
| [SNPs] | |
| TotalSNPs 128280 128280 | |
| TC 10589(8.25%) 10831(8.44%) | |
| TA 10358(8.07%) 10708(8.35%) | |
| TG 10451(8.15%) 10607(8.27%) | |
| GT 10607(8.27%) 10451(8.15%) | |
| GC 10596(8.26%) 11121(8.67%) | |
| GA 10812(8.43%) 10575(8.24%) | |
| CT 10831(8.44%) 10589(8.25%) | |
| CG 11121(8.67%) 10596(8.26%) | |
| CA 11216(8.74%) 10416(8.12%) | |
| AT 10708(8.35%) 10358(8.07%) | |
| AG 10575(8.24%) 10812(8.43%) | |
| AC 10416(8.12%) 11216(8.74%) | |
| TotalGSNPs 16675 16675 | |
| CA 1486(8.91%) 1289(7.73%) | |
| CT 1454(8.72%) 1393(8.35%) | |
| CG 1378(8.26%) 1361(8.16%) | |
| AC 1289(7.73%) 1486(8.91%) | |
| AG 1392(8.35%) 1424(8.54%) | |
| AT 1402(8.41%) 1394(8.36%) | |
| TG 1335(8.01%) 1367(8.20%) | |
| TA 1394(8.36%) 1402(8.41%) | |
| TC 1393(8.35%) 1454(8.72%) | |
| GC 1361(8.16%) 1378(8.26%) | |
| GA 1424(8.54%) 1392(8.35%) | |
| GT 1367(8.20%) 1335(8.01%) | |
| TotalIndels 41145 41145 | |
| T. 80(0.19%) 10050(24.43%) | |
| G. 92(0.22%) 10377(25.22%) | |
| C. 82(0.20%) 10346(25.15%) | |
| A. 88(0.21%) 10030(24.38%) | |
| .G 10377(25.22%) 92(0.22%) | |
| .T 10050(24.43%) 80(0.19%) | |
| .A 10030(24.38%) 88(0.21%) | |
| .C 10346(25.15%) 82(0.20%) | |
| TotalGIndels 5122 5122 | |
| C. 1(0.02%) 1276(24.91%) | |
| A. 0(0.00%) 1276(24.91%) | |
| T. 0(0.00%) 1255(24.50%) | |
| G. 1(0.02%) 1313(25.63%) | |
| .A 1276(24.91%) 0(0.00%) | |
| .C 1276(24.91%) 1(0.02%) | |
| .G 1313(25.63%) 1(0.02%) | |
| .T 1255(24.50%) 0(0.00%) |
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