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December 19, 2015 17:57
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| /Users/mario/bioinf/nmeth/../reference/escherichia_coli_NCBI.fa /Users/mario/bioinf/nmeth/contigs_fast.fasta | |
| NUCMER | |
| [REF] [QRY] | |
| [Sequences] | |
| TotalSeqs 1 1 | |
| AlignedSeqs 1(100.00%) 1(100.00%) | |
| UnalignedSeqs 0(0.00%) 0(0.00%) | |
| [Bases] | |
| TotalBases 4639675 4661369 | |
| AlignedBases 3537424(76.24%) 3477533(74.60%) | |
| UnalignedBases 1102251(23.76%) 1183836(25.40%) | |
| [Alignments] | |
| 1-to-1 1756 1756 | |
| TotalLength 3503026 3460623 | |
| AvgLength 1994.89 1970.74 | |
| AvgIdentity 83.94 83.94 | |
| M-to-M 1854 1854 | |
| TotalLength 3582258 3538883 | |
| AvgLength 1932.18 1908.78 | |
| AvgIdentity 83.96 83.96 | |
| [Feature Estimates] | |
| Breakpoints 3708 3708 | |
| Relocations 16 54 | |
| Translocations 0 0 | |
| Inversions 0 0 | |
| Insertions 1819 1796 | |
| InsertionSum 1163214 1201852 | |
| InsertionAvg 639.48 669.18 | |
| TandemIns 0 0 | |
| TandemInsSum 0 0 | |
| TandemInsAvg 0.00 0.00 | |
| [SNPs] | |
| TotalSNPs 237073 237073 | |
| TC 18991(8.01%) 23647(9.97%) | |
| TA 9811(4.14%) 9824(4.14%) | |
| TG 18043(7.61%) 22337(9.42%) | |
| CT 23647(9.97%) 18991(8.01%) | |
| CG 24310(10.25%) 25466(10.74%) | |
| CA 23431(9.88%) 18744(7.91%) | |
| GC 25466(10.74%) 24310(10.25%) | |
| GT 22337(9.42%) 18043(7.61%) | |
| GA 23089(9.74%) 19380(8.17%) | |
| AG 19380(8.17%) 23089(9.74%) | |
| AC 18744(7.91%) 23431(9.88%) | |
| AT 9824(4.14%) 9811(4.14%) | |
| TotalGSNPs 565 565 | |
| CG 73(12.92%) 67(11.86%) | |
| CA 44(7.79%) 28(4.96%) | |
| CT 74(13.10%) 67(11.86%) | |
| TA 15(2.65%) 9(1.59%) | |
| TG 33(5.84%) 28(4.96%) | |
| TC 67(11.86%) 74(13.10%) | |
| AG 41(7.26%) 86(15.22%) | |
| AT 9(1.59%) 15(2.65%) | |
| AC 28(4.96%) 44(7.79%) | |
| GT 28(4.96%) 33(5.84%) | |
| GC 67(11.86%) 73(12.92%) | |
| GA 86(15.22%) 41(7.26%) | |
| TotalIndels 349441 349441 | |
| T. 45616(13.05%) 37877(10.84%) | |
| C. 51796(14.82%) 40089(11.47%) | |
| G. 53914(15.43%) 39533(11.31%) | |
| A. 44600(12.76%) 36016(10.31%) | |
| .C 40089(11.47%) 51796(14.82%) | |
| .T 37877(10.84%) 45616(13.05%) | |
| .A 36016(10.31%) 44600(12.76%) | |
| .G 39533(11.31%) 53914(15.43%) | |
| TotalGIndels 3077 3077 | |
| C. 554(18.00%) 219(7.12%) | |
| T. 549(17.84%) 194(6.30%) | |
| A. 534(17.35%) 202(6.56%) | |
| G. 601(19.53%) 224(7.28%) | |
| .A 202(6.56%) 534(17.35%) | |
| .G 224(7.28%) 601(19.53%) | |
| .C 219(7.12%) 554(18.00%) | |
| .T 194(6.30%) 549(17.84%) |
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