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// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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// llil4map_next.cc (using string_cnt_t) |
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// A phmap::parallel_flat_hash_set demonstration. |
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// https://gist.github.com/marioroy/693d952b578792bf090fe20c2aaccad5 |
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// |
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// April 25, 2024 |
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// Based on llil3m.cpp https://perlmonks.com/?node_id=11149482 |
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// Original challenge https://perlmonks.com/?node_id=11147822 |
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// and summary https://perlmonks.com/?node_id=11150293 |
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// Other demonstrations https://perlmonks.com/?node_id=11149907 |
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// |
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// Authors |
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// Mario Roy - C++ demonstration with parallel capabilities |
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// eyepopslikeamosquito - Co-author, learning C++ at PerlMonks.com |
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// Gregory Popovitch - Further changes and simplification |
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// |
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// See also, memory efficient variant |
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// https://gist.github.com/marioroy/d02881b96b20fa1adde4388b3e216163 |
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// |
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// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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// OpenMP Little Book - https://nanxiao.gitbooks.io/openmp-little-book |
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// |
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// Obtain the parallel hashmap library (required dependency): |
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// git clone --depth=1 https://github.com/greg7mdp/parallel-hashmap |
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// |
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// Compile on Linux (clang++ or g++): |
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// clang++ -o llil4map_next -std=c++20 -fopenmp -Wall -O3 llil4map_next.cc -I./parallel-hashmap |
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// |
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// On macOS, use g++-12 from https://brew.sh (installation: brew install gcc@12). |
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// The g++ command also works with mingw C++ compiler (https://sourceforge.net/projects/mingw-w64) |
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// that comes bundled with Strawberry Perl (C:\Strawberry\c\bin\g++.exe). |
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// |
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// Obtain gen-llil.pl and gen-long-llil.pl from https://perlmonks.com/?node_id=11148681 |
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// perl gen-llil.pl big1.txt 200 3 1 |
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// perl gen-llil.pl big2.txt 200 3 1 |
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// perl gen-llil.pl big3.txt 200 3 1 |
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// |
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// To make random input, obtain shuffle.pl from https://perlmonks.com/?node_id=11149800 |
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// perl shuffle.pl big1.txt >tmp && mv tmp big1.txt |
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// perl shuffle.pl big2.txt >tmp && mv tmp big2.txt |
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// perl shuffle.pl big3.txt >tmp && mv tmp big3.txt |
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// |
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// Example run: llil4map big1.txt big2.txt big3.txt >out.txt |
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// NUM_THREADS=3 llil4map ... |
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// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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#include <cassert> |
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#include <cstdio> |
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#include <cstddef> |
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#include <cstdint> |
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#include <cstdlib> |
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#include <cstring> |
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#include <ctime> |
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#include <compare> |
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#include <chrono> |
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#include <string> |
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#include <string_view> |
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#include <array> |
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#include <vector> |
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#include <thread> |
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#include <execution> |
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#include <atomic> |
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#include <iomanip> |
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#include <iostream> |
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#include <fstream> |
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#include <parallel_hashmap/phmap.h> |
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static_assert(sizeof(size_t) == sizeof(int64_t), "size_t too small, need a 64-bit compile"); |
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// Specify 0/1 to use boost's parallel sorting algorithm; faster than __gnu_parallel::sort. |
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// https://www.boost.org/doc/libs/1_85_0/libs/sort/doc/html/sort/parallel.html |
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// https://www.boost.org/doc/libs/1_85_0/libs/sort/doc/papers/block_indirect_sort_en.pdf |
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// This requires the boost header files: e.g. devpkg-boost bundle on Clear Linux. |
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// Note: Another option is downloading and unpacking Boost locally. |
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// (no need to build it because the bits we use are header file only) |
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#define USE_BOOST_PARALLEL_SORT 1 |
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#if USE_BOOST_PARALLEL_SORT |
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#ifdef __clang__ |
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#pragma clang diagnostic push |
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#pragma clang diagnostic ignored "-Wunused-parameter" |
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#pragma clang diagnostic ignored "-Wshadow" |
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#include <boost/sort/sort.hpp> |
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#pragma clang diagnostic pop |
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#else |
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#include <boost/sort/sort.hpp> |
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#endif |
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#endif |
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#ifdef _OPENMP |
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#include <omp.h> |
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#endif |
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class spinlock_mutex { |
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// https://rigtorp.se/spinlock/ |
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// https://vorbrodt.blog/2019/02/12/fast-mutex/ |
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public: |
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// Assignment is disabled. |
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spinlock_mutex& operator=(const spinlock_mutex& rhs) = delete; |
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void lock() noexcept { |
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for (;;) { |
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if (!lock_.exchange(true, std::memory_order_acquire)) |
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break; |
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while (lock_.load(std::memory_order_relaxed)) |
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__builtin_ia32_pause(); |
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} |
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} |
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void unlock() noexcept { |
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lock_.store(false, std::memory_order_release); |
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} |
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private: |
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alignas(4 * sizeof(std::max_align_t)) std::atomic_bool lock_ = false; |
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}; |
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// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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typedef uint32_t int_type; |
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// #include "string_cnt.h" // original + key length stored with cnt |
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// #include "string_cnt_f.h" // fixed-length-only version |
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#include "string_cnt_u.h" // union std::array |
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using string_cnt = string_cnt_t<12>; |
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namespace std { |
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template<> struct hash<string_cnt> { |
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std::size_t operator()(const string_cnt& v) const noexcept { return v.hash(); }; |
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}; |
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} |
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using string_cnt_vector_t = std::vector<string_cnt>; |
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// declare the type of the parallel_flat_hash_set with spinlock mutexes |
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using string_cnt_set_t = phmap::parallel_flat_hash_set< |
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string_cnt, |
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phmap::priv::hash_default_hash<string_cnt>, |
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phmap::priv::hash_default_eq<string_cnt>, |
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phmap::priv::Allocator<string_cnt>, |
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12, |
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spinlock_mutex |
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>; |
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// Mimic the Perl get_properties subroutine ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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// convert positive number from string to uint32_t |
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inline uint32_t fast_atoll64(const char* str) |
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{ |
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uint32_t val = 0; |
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uint8_t digit; |
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while ((digit = uint8_t(*str++ - '0')) <= 9) |
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val = val * 10 + digit; |
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return val; |
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} |
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// Helper function to find a character. |
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inline char* find_char(char* first, char* last, char c) |
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{ |
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while (first != last) { |
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if (*first == c) break; |
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++first; |
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} |
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return first; |
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} |
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// Limit chunk size and line length. |
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inline constexpr size_t CHUNK_SIZE = 32768; |
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inline constexpr size_t MAX_LINE_LEN = 255; |
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static int64_t get_properties( |
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const char* fname, // in : the input file name |
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string_cnt_set_t& set_ret) // inout : the set to be updated |
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{ |
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int64_t num_lines = 0; |
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std::ifstream fin(fname, std::ifstream::binary); |
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if (!fin.is_open()) { |
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std::cerr << "Error opening '" << fname << "' : " << strerror(errno) << '\n'; |
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return num_lines; |
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} |
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#pragma omp parallel reduction(+:num_lines) |
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{ |
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std::string buf; |
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buf.resize(CHUNK_SIZE + MAX_LINE_LEN + 1, '\0'); |
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while (fin.good()) { |
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size_t len = 0; |
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// Read the next chunk serially. |
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#pragma omp critical |
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{ |
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fin.read(&buf[0], CHUNK_SIZE); |
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if ((len = fin.gcount()) > 0) { |
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if (buf[len - 1] != '\n' && fin.getline(&buf[len], MAX_LINE_LEN)) { |
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// Getline discards the newline char and appends null char. |
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// Therefore, change '\0' to '\n'. |
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len += fin.gcount(); |
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buf[len - 1] = '\n'; |
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} |
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} |
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} |
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if (!len) |
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break; |
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buf[len] = '\0'; |
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char *first = &buf[0]; |
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char *last = &buf[len]; |
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// Process max Nthreads chunks concurrently. |
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while (first < last) { |
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char* beg_ptr{first}; |
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char* end_ptr{find_char(first, last, '\n')}; |
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char* found = find_char(beg_ptr, end_ptr, '\t'); |
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first = end_ptr + 1; |
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if (found == end_ptr) |
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continue; |
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assert(*found == '\t'); |
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int_type count = fast_atoll64(found + 1); |
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string_cnt s{(const char *)beg_ptr, (size_t)(found - beg_ptr), count}; |
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// Use lazy_emplace to modify the set while the mutex is locked. |
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set_ret.lazy_emplace_l( |
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s, |
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[&](string_cnt_set_t::value_type& p) { |
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p.incr(count); // called only when key was already present |
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}, |
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[&](const string_cnt_set_t::constructor& ctor) { |
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ctor(std::move(s)); // construct value_type in place when key not present |
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} |
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); |
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++num_lines; |
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} |
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} |
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} |
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fin.close(); |
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// std::cerr << "getprops done\n"; |
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return num_lines; |
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} |
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// Output subroutine ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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size_t divide_up(size_t dividend, size_t divisor) |
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{ |
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if (dividend % divisor) |
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return (size_t)(dividend / divisor) + 1; |
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else |
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return (size_t)(dividend / divisor); |
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} |
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static void out_properties( |
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const int nthds, // in : the number of threads |
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string_cnt_vector_t& vec) // in : the vector to output |
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{ |
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size_t num_chunks = divide_up(vec.size(), CHUNK_SIZE); |
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#ifdef _OPENMP |
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int nthds_out = std::min(nthds, 32); |
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#pragma omp parallel for ordered schedule(static, 1) num_threads(nthds_out) |
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#endif |
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for (size_t chunk_id = 1; chunk_id <= num_chunks; ++chunk_id) { |
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std::string str(""); str.reserve(2048 * 1024); |
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auto it = vec.begin() + (chunk_id - 1) * CHUNK_SIZE; |
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auto it2 = vec.begin() + std::min(vec.size(), chunk_id * CHUNK_SIZE); |
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for (; it != it2; ++it) { |
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str.append(it->getstr()); |
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str.append("\t", 1); |
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str.append(std::to_string(it->getcnt())); |
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str.append("\n", 1); |
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} |
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#pragma omp ordered |
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std::cout << str << std::flush; |
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} |
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} |
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typedef std::chrono::high_resolution_clock high_resolution_clock; |
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typedef std::chrono::high_resolution_clock::time_point time_point; |
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typedef std::chrono::milliseconds milliseconds; |
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double elaspe_time(time_point cend, time_point cstart) { |
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return double ( |
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std::chrono::duration_cast<milliseconds>(cend - cstart).count() |
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) * 1e-3; |
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} |
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// ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ |
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int main(int argc, char* argv[]) |
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{ |
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if (argc < 2) { |
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if (argc > 0) |
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std::cerr << "usage: llil4map file1 file2 ... >out.txt\n"; |
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return 1; |
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} |
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std::cerr << std::setprecision(3) << std::setiosflags(std::ios::fixed); |
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std::cerr << "llil4map start\n"; |
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#ifdef _OPENMP |
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std::cerr << "use OpenMP\n"; |
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#else |
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std::cerr << "don't use OpenMP\n"; |
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#endif |
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#if USE_BOOST_PARALLEL_SORT == 0 |
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std::cerr << "don't use boost sort\n"; |
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#else |
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std::cerr << "use boost sort\n"; |
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#endif |
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time_point cstart1, cend1, cstart2, cend2, cstart3, cend3s, cend3; |
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cstart1 = high_resolution_clock::now(); |
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#ifdef _OPENMP |
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// Determine the number of threads. |
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const char* env_nthds = std::getenv("NUM_THREADS"); |
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int nthds = ( env_nthds && strlen(env_nthds) ) |
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? ::atoi(env_nthds) |
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: std::thread::hardware_concurrency(); |
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omp_set_dynamic(false); |
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omp_set_num_threads(nthds); |
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omp_set_max_active_levels(1); |
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int nthds_move = std::min(nthds, 12); |
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#else |
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int nthds = 1; |
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int nthds_move = 1; |
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#endif |
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// Get the list of input files from the command line |
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int nfiles = argc - 1; |
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char** fname = &argv[1]; |
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// Store the properties into a vector |
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string_cnt_vector_t propvec; |
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int64_t num_lines = 0; |
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{ |
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// Enclose the set inside a block, so GC releases the object |
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// immediately after exiting the scope. |
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string_cnt_set_t set; |
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for (int i = 0; i < nfiles; ++i) |
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num_lines += get_properties(fname[i], set); |
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cend1 = high_resolution_clock::now(); |
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double ctaken1 = elaspe_time(cend1, cstart1); |
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std::cerr << "get properties " << std::setw(8) << ctaken1 << " secs\n"; |
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if (set.size() == 0) { |
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std::cerr << "No work, exiting...\n"; |
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return 1; |
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} |
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cstart2 = high_resolution_clock::now(); |
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if (nthds == 1) { |
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propvec.reserve(set.size()); |
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for (auto& x : set) |
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propvec.push_back(std::move(const_cast<string_cnt&>(x))); |
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set.clear(); |
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} |
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else { |
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propvec.resize(set.size()); |
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std::vector<string_cnt_vector_t::iterator> I(set.subcnt()); |
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auto cur = propvec.begin(); |
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for (size_t i = 0; i < set.subcnt(); ++i) { |
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set.with_submap(i, [&](const string_cnt_set_t::EmbeddedSet& set) { |
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I[i] = cur; |
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cur += set.size(); |
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}); |
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} |
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#pragma omp parallel for schedule(static, 1) num_threads(nthds_move) |
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for (size_t i = 0; i < set.subcnt(); ++i) { |
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set.with_submap_m(i, [&](string_cnt_set_t::EmbeddedSet& set) { |
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auto it = I[i]; |
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for (auto& x : set) |
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*it++ = std::move(const_cast<string_cnt&>(x)); // force move |
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// reset the set (no longer needed) to reclaim memory early |
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set = string_cnt_set_t::EmbeddedSet(); |
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}); |
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} |
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} |
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cend2 = high_resolution_clock::now(); |
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double ctaken2 = elaspe_time(cend2, cstart2); |
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std::cerr << "map to vector " << std::setw(8) << ctaken2 << " secs\n"; |
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} |
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cstart3 = high_resolution_clock::now(); |
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// Sort the vector by (count) in reverse order, (name) in lexical order |
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auto reverse_order = [](const string_cnt& left, const string_cnt& right) { |
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int_type left_cnt = left.getcnt(), right_cnt = right.getcnt(); |
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return left_cnt != right_cnt ? left_cnt > right_cnt : left < right; |
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}; |
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#if USE_BOOST_PARALLEL_SORT == 0 |
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// Standard sort |
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std::sort(propvec.begin(), propvec.end(), reverse_order); |
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#else |
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// Parallel sort |
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boost::sort::block_indirect_sort( |
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propvec.begin(), propvec.end(), reverse_order, |
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#ifdef __NVCOMPILER_LLVM__ |
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std::min(nthds, 32) |
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#else |
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nthds |
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#endif |
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); |
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#endif |
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cend3s = high_resolution_clock::now(); |
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// Output the sorted vector |
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out_properties(nthds, propvec); |
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cend3 = high_resolution_clock::now(); |
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double ctaken = elaspe_time(cend3, cstart1); |
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double ctaken3s = elaspe_time(cend3s, cstart3); |
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double ctaken3o = elaspe_time(cend3, cend3s); |
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std::cerr << "vector stable sort " << std::setw(8) << ctaken3s << " secs\n"; |
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std::cerr << "write stdout " << std::setw(8) << ctaken3o << " secs\n"; |
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std::cerr << "total time " << std::setw(8) << ctaken << " secs\n"; |
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std::cerr << " count lines " << num_lines << "\n"; |
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std::cerr << " count unique " << propvec.size() << "\n"; |
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// Free dynamically allocated memory in parallel. |
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#ifndef FIXED_LENGTH_ONLY |
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#pragma omp parallel for schedule(static, 200000) num_threads(nthds) |
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for (size_t i = 0; i < propvec.size(); i++) |
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propvec[i].free(); |
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#endif |
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// Hack to see Private Bytes in Windows Task Manager |
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// (uncomment next line so process doesn't exit too quickly) |
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// std::this_thread::sleep_for(milliseconds(9000)); |
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return 0; |
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} |