mark-petersen

<stream name="output"
	filename_template="output/snapshot.$Y-$M-$D_$h.$m.$s.nc"
	clobber_mode="truncate"
	reference_time="0001-01-01_00:00:00"
	type="output"
	filename_interval="01-00-00_00:00:00"
	output_interval="00-00-10_00:00:00">

	<var name="xtime"/>
	<var name="daysSinceStartOfSim"/>

mark-petersen

program hello
   real*8, parameter :: ONE=1.0
   real*8, parameter :: default_fill_value = -huge(ONE)
   real*8 :: default_minimum
   real*8, parameter :: default_maximum = huge(ONE)

   default_minimum = default_fill_value + spacing(default_fill_value)

   print *, 'default_fill_value           ',default_fill_value
   print *, 'spacing(default_fill_value)  ',spacing(default_fill_value)

mark-petersen

# This file is the ocean core's configuration file. It is specific to the ocean
# core, and a specific machine. Each machine will configure this file
# differently, but it can be used to point on version of the testing
# infrastructure at a different version of the model.


# The namelists section defines paths to template namelists that will be used
# to generate specific namelists. Typically these will point to the forward and
# init namelists in the default_inputs directory after a successful build of
# the ocean model.

mark-petersen

import numpy as np
import xarray
from mpas_tools.io import write_netcdf
from mpas_tools.conversion import convert
from mpas_tools.viz.paraview_extractor import extract_vtk

import jigsawpy
import jigsaw_to_MPAS

def make_mesh():

mark-petersen

def cell_size_color_map():
    cmapArray = [
    (.85, .93, .99), # white
    (.28, .59, .82), # aqua blue
    (.08, .36, .60), # blue
    (.29, .57, .31), # dark green
    (.40, .62, .31), # light green
    (.99, .95, .58), # pastel yellow
    (.92, .84, .60), # yellow
    (.81, .49, .36), # orange

mark-petersen

<streams>
<immutable_stream name="mesh"
                  type="none"
                  io_type="pnetcdf"
                  filename_template="mesh_variables.nc" />

<immutable_stream name="input"
                  type="input"
                  io_type="pnetcdf"
                  filename_interval="none"

mark-petersen

<streams>

<immutable_stream name="mesh"
                  type="none"
                  io_type="pnetcdf"
                  filename_template="/projects/ccsm/acme/inputdata/ocn/mpas-o/oRRS30to10v3wLI/oRRS30to10v3wLI.171109.nc"
/>
<immutable_stream name="input"
                  type="input"
                  io_type="pnetcdf"

mark-petersen

netcdf vertical_grid {
dimensions:
	nVertLevels = 64 ;
variables:
	double refBottomDepth(nVertLevels) ;
	double refMidDepth(nVertLevels) ;
	double refLayerThickness(nVertLevels) ;

// global attributes:
		:_NCProperties = "version=2,netcdf=4.7.3,hdf5=1.10.5" ;

mark-petersen

# find single pits. Testing in
# /lustre/scratch4/turquoise/mpeterse/runs/200311_EC60to30_OD_pits_1/ocean/global_ocean/EC60to30/init/initial_state
import numpy as np
from netCDF4 import Dataset

# load mesh variables
ncfile = Dataset('initial_state.nc', 'r')
nCells = ncfile.dimensions['nCells']
maxLevelCell = ncfile.variables['maxLevelCell']
cellsOnCell = ncfile.variables['cellsOnCell']

mark-petersen

gr-fe2:compass$ git grep -B 1 'oceans11'|grep file_name|grep landice
landice/Thwaites_variability/4km_varres/standard_configuration/config_setup_model_step.xml-        <get_file dest_path="work_case_dir" file_name="thwaites.4km.nc">
landice/dome/variable_resolution/decomposition_test/config_setup_mesh_step.xml-        <get_file hash="fs1ydwitqa" dest_path="work_resolution_dir" file_name="dome_varres_grid.nc">
landice/dome/variable_resolution/halfar_analytic_test/config_setup_mesh_step.xml-        <get_file hash="fs1ydwitqa" dest_path="work_resolution_dir" file_name="dome_varres_grid.nc">
landice/dome/variable_resolution/ho_decomposition_test/config_setup_mesh_step.xml-        <get_file hash="fs1ydwitqa" dest_path="work_resolution_dir" file_name="dome_varres_grid.nc">
landice/dome/variable_resolution/ho_restart_test/config_setup_mesh_step.xml-        <get_file hash="fs1ydwitqa" dest_path="work_resolution_dir" file_name="dome_varres_grid.nc">
landice/dome/variable_resolution/restart_test/config_setup_mesh_step.