Created
February 14, 2016 05:07
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Input multiple files from the folder into one data table
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#making a list of the files in the folder "est" | |
estDataFiles <- list.files("est", pattern = "\\.txt$", full.names=TRUE) | |
estDataFiles | |
#inpu the files | |
listoftables <- lapply(estDataFiles, read.table, header=T, sep="\t") | |
names(listoftables) <- estDataFiles | |
#confirmation | |
head(listoftables[[1]]) | |
length(names(listoftables)) | |
head(listoftables[[1]][,1]) | |
head(listoftables[[1]][,2]) | |
head(listoftables[[1]][,3]) | |
head(listoftables[[1]][,4]) | |
#making a matrix file consists of column for gene expression data (column 4) | |
i=1 | |
x <- NULL | |
for (i in 1:length(names(listoftables))) x <- cbind(x,listoftables[[i]][,4]) | |
head(x) | |
rownames(x) <-listoftables[[1]][,1] | |
colnames(x)<-estDataFiles | |
#confirmation | |
head(x) | |
#writing a table | |
write(x, file="summary_est.txt",sep="\t") | |
ranking <- rank(x[,9]) | |
obj <- nrow(x)-51 < ranking | |
x[obj,] | |
x <- read.table("summary_est_mod.txt",header=T,sep="\t") |
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