gistfile1.txt

(planemo)martenson:picard marten$ planemo lint
Traceback (most recent call last):
  File "/Users/marten/devel/venv/planemo/bin/planemo", line 9, in <module>
    load_entry_point('planemo==0.0.1', 'console_scripts', 'planemo')()
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/click/core.py", line 610, in __call__
    return self.main(*args, **kwargs)
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/click/core.py", line 590, in main
    rv = self.invoke(ctx)
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/click/core.py", line 936, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/click/core.py", line 782, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/click/core.py", line 416, in invoke
    return callback(*args, **kwargs)
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/click/decorators.py", line 64, in new_func
    return ctx.invoke(f, obj, *args[1:], **kwargs)
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/click/core.py", line 416, in invoke
    return callback(*args, **kwargs)
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/planemo/commands/cmd_lint.py", line 34, in cli
    for (tool_path, tool_xml) in load_tool_elements_from_path(path):
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/galaxy/tools/loader_directory.py", line 12, in load_tool_elements_from_path
    tool_elements.append((file, loader.load_tool(file)))
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/galaxy/tools/loader.py", line 11, in load_tool
    tree = raw_tool_xml_tree(path)
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/galaxy/tools/loader.py", line 43, in raw_tool_xml_tree
    tree = _parse_xml(path)
  File "/Users/marten/devel/venv/planemo/lib/python2.7/site-packages/galaxy/tools/loader.py", line 230, in _parse_xml
    tree = ElementTree.parse(fname)
  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/xml/etree/ElementTree.py", line 1182, in parse
    tree.parse(source, parser)
  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/xml/etree/ElementTree.py", line 656, in parse
    parser.feed(data)
  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/xml/etree/ElementTree.py", line 1642, in feed
    self._raiseerror(v)
  File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/xml/etree/ElementTree.py", line 1506, in _raiseerror
    raise err
xml.etree.ElementTree.ParseError: mismatched tag: line 47, column 6