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martenson/500.ga Secret

Last active March 10, 2021 18:11
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{
"a_galaxy_workflow": "true",
"annotation": "",
"format-version": "0.1",
"name": "raw_to_mzml_convert",
"steps": {
"0": {
"annotation": "",
"content_id": null,
"errors": null,
"id": 0,
"input_connections": {},
"inputs": [
{
"description": "",
"name": "RAW file from Data Library"
}
],
"label": "RAW file from Data Library",
"name": "Input dataset",
"outputs": [],
"position": {
"bottom": 387.5,
"height": 81,
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"right": 589,
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"width": 200,
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},
"tool_id": null,
"tool_state": "{\"optional\": false}",
"tool_version": null,
"type": "data_input",
"uuid": "f69567fb-464a-47c7-9670-3cdb5e406de2",
"workflow_outputs": [
{
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"output_name": "output",
"uuid": "b160f580-e14a-4257-8ebd-745546734371"
}
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},
"1": {
"annotation": "",
"content_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/thermo_raw_file_converter/thermo_raw_file_converter/1.2.3+galaxy0",
"errors": null,
"id": 1,
"input_connections": {
"input_file": {
"id": 0,
"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool Thermo",
"name": "input_file"
}
],
"label": "Convert the RAW file",
"name": "Thermo",
"outputs": [
{
"name": "output",
"type": "mzml"
},
{
"name": "output_metadata",
"type": "txt"
}
],
"position": {
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"left": 712,
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"top": 310.5,
"width": 200,
"x": 712,
"y": 310.5
},
"post_job_actions": {},
"tool_id": "toolshed.g2.bx.psu.edu/repos/galaxyp/thermo_raw_file_converter/thermo_raw_file_converter/1.2.3+galaxy0",
"tool_shed_repository": {
"changeset_revision": "92ac8e086317",
"name": "thermo_raw_file_converter",
"owner": "galaxyp",
"tool_shed": "toolshed.g2.bx.psu.edu"
},
"tool_state": "{\"allDetectors\": \"false\", \"format_cond\": {\"output_format\": \"1\", \"__current_case__\": 1, \"zlib_boolean\": \"true\", \"peakpicking_boolean\": \"false\"}, \"ignore_instrument_errors_boolean\": \"true\", \"includeExceptionData\": \"true\", \"input_file\": {\"__class__\": \"RuntimeValue\"}, \"msLevel\": \"\", \"output_metadata_selector\": \"0\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "1.3.2+galaxy0",
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"uuid": "630b8dc9-af71-4533-a64d-675780cb768e",
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"uuid": "7fc9ed13-381b-4ad9-ba54-0f1ae6c0fdb1"
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"output_name": "output_metadata",
"uuid": "88f6f5cb-1bb2-4691-8f86-7f1a5700da22"
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]
},
"2": {
"annotation": "",
"content_id": "export_to_path",
"errors": null,
"id": 2,
"input_connections": {
"json_metadata": {
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"output_name": "output_metadata"
},
"mzml_dataset": {
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"output_name": "output"
}
},
"inputs": [
{
"description": "runtime parameter for tool export to path",
"name": "json_metadata"
},
{
"description": "runtime parameter for tool export to path",
"name": "mzml_dataset"
},
{
"description": "runtime parameter for tool export to path",
"name": "remote_path"
},
{
"description": "runtime parameter for tool export to path",
"name": "txt_metadata"
}
],
"label": "Export to path on Sally",
"name": "export to path",
"outputs": [
{
"name": "log",
"type": "txt"
}
],
"position": {
"bottom": 565.5,
"height": 172,
"left": 1067,
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},
"post_job_actions": {},
"tool_id": "export_to_path",
"tool_state": "{\"json_metadata\": {\"__class__\": \"RuntimeValue\"}, \"mzml_dataset\": {\"__class__\": \"RuntimeValue\"}, \"remote_path\": {\"__class__\": \"RuntimeValue\"}, \"txt_metadata\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
"tool_version": "0.0.2",
"type": "tool",
"uuid": "67f1d19b-d112-4be0-b245-36dba879e7e5",
"workflow_outputs": [
{
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"output_name": "log",
"uuid": "09a0103f-ec47-41b1-b620-a0debe3b6a31"
}
]
}
},
"tags": [],
"uuid": "56315962-6029-414b-9cb4-c4545d75bf70",
"version": 10
}
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