Created
May 27, 2021 12:53
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Soft sum to zero constraint breaks ADVI
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library(cmdstanr) | |
model_code <- " | |
data { | |
int N; | |
vector[N] y; | |
int K; | |
int<lower=1, upper=K> groups[N]; | |
} | |
parameters { | |
vector[K] z; | |
real<lower=0> tau; | |
real<lower=0> sigma; | |
} | |
transformed parameters { | |
vector[K] group_mus = z * tau; | |
} | |
model { | |
y ~ normal(group_mus[groups], sigma); | |
sigma ~ normal(0, 1); | |
tau ~ normal(0, 1); | |
z ~ normal(0, 1); | |
sum(group_mus) ~ normal(0, 0.01 * K); | |
} | |
" | |
m <- cmdstan_model(write_stan_file(model_code)) | |
set.seed(8963275) | |
N <- 40 | |
K <- 10 | |
groups <- rep(1:K, length.out = N) | |
mu <- sort(rnorm(2, 0, 5)) | |
sigma <- abs(rnorm(1, 0, 1)) | |
tau <- abs(rnorm(1, 0, 1)) | |
group_mus <- rnorm(K, sd = tau) | |
group_mus <- group_mus - sum(group_mus) / K | |
cat("True group_mus: ", paste0(group_mus, collapse = "; "), ", tau: ", tau, ", sigma: ", sigma, "\n") | |
y <- rnorm(N, mean = group_mus[groups], sd = sigma) | |
dd <- list(N = N, y = y, K = K, groups = groups) | |
res_sampling <- m$sample(data = dd, refresh = 0, parallel_chains = 4, adapt_delta = 0.95) | |
res_advi <- m$variational(data = dd) | |
res_sampling$summary()[,c("variable", "q5", "q95", "ess_bulk")] | |
res_advi$summary()[,c("variable", "q5", "q95")] |
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