Created
February 27, 2024 12:45
-
-
Save martinmodrak/b651d7dce7d17f937203cabf3cd0cb30 to your computer and use it in GitHub Desktop.
SBC shows failures when rejecting individual data points
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
library(SBC) | |
library(cmdstanr) | |
library(bayesplot) | |
library(posterior) | |
library(future) | |
plan(multisession) | |
options(SBC.min_chunk_size = 10) | |
m_code <- " data { | |
int<lower=0> N; | |
array[N] real y; | |
} | |
parameters { | |
real mu; | |
} | |
model { | |
mu ~ normal(0, 2); | |
y ~ normal(mu, 1); | |
} | |
" | |
backend <- SBC_backend_cmdstan_sample(cmdstan_model(write_stan_file(m_code)), iter_warmup = 800, iter_sampling = 800) | |
N <- 10 | |
generator <- SBC_generator_function(function() { | |
mu <- rnorm(1, 0, 2) | |
# Reject observations one at a time | |
y <- rep(-Inf, N) | |
repeat { | |
bad_indices <- y < -1 | |
if(!any(bad_indices)) { | |
break | |
} | |
y[bad_indices] <- rnorm(sum(bad_indices), mu, 1) | |
} | |
list( | |
variables = list(mu = mu), | |
generated = list(N = N, y = y) | |
) | |
}) | |
set.seed(2323455) | |
datasets <- generate_datasets(generator, 100) | |
results <- compute_SBC(datasets, backend, keep_fits = FALSE) | |
plot_ecdf_diff(results) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment