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R.md

R with MKL

Environment

  • AlmaLinux 8.8
  • OneAPI 2023.1 (with ifort and MKL)
# Activate ifort & MKL on bash
$ . /opt/intel/oneapi/setvars.sh

# some libraries
$ su -
su$ dnf install readline-devel libXt-devel libcurl-devel libjpeg-devel cairo-devel libtiff-devel xz-devel pcre2-devel java
su$ dnf install openssl-devel libxml2-devel harfbuzz-devel fribidi-devel
su$ exit

# Download & compile R with MKL
$ wget https://cran.r-project.org/src/base/R-4/R-4.3.1.tar.gz
$ tar xvzf R-4.3.1.tar.gz
$ cd R-4.3.1
$ FC=ifort ./configure --prefix=/opt/local/R/R-4.3.1 --with-blas=" -L${MKLROOT}/lib/intel64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread -lm -ldl " --with-lapack
$ make
$ su
su$ make install
su$ exit

Reference

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