Skip to content

Instantly share code, notes, and snippets.

@mattearnshaw
Created April 5, 2018 19:42
Show Gist options
  • Save mattearnshaw/5c1e97ef1940639707b9b0c6c7cebfe0 to your computer and use it in GitHub Desktop.
Save mattearnshaw/5c1e97ef1940639707b9b0c6c7cebfe0 to your computer and use it in GitHub Desktop.
<?xml version="1.0" encoding="UTF-8" standalone="yes"?>
<neuroml xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://www.neuroml.org/schema/neuroml2" id="NeuroML_2_loaded_via_LEMS_by_Geppetto" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.githubusercontent.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2beta5.xsd">
<ionChannel species="non_specific" type="ionChannelPassive" conductance="0.5pS" id="leak"/>
<ionChannelHH species="non_specific" conductance="10pS" id="ih_rod">
<notes>Single ion channel description, adapted from Liu XD, Kourennyi DE (2004) Effects of tetraethylammonium on Kx channels and simulated light response in rod photoreceptors. Ann Biomed Eng 32:1428-42</notes>
<gateHHrates instances="1" id="n">
<forwardRate type="HHExpRate" rate="1per_s" midpoint="-82mV" scale="-10.66mV"/>
<reverseRate type="HHExpRate" rate="1per_s" midpoint="-82mV" scale="10.66mV"/>
</gateHHrates>
</ionChannelHH>
<ionChannelHH species="k" conductance="10pS" id="kv_rod">
<notes>Single Channel description adapted from Y. Kamiyama, T. O'Sura, S. Usui (1996): Ionic current model of the vertebrate rod photoreceptor, Vision Research.</notes>
<gateHHrates instances="4" id="n">
<forwardRate type="HHExpLinearRate" rate="0.11per_ms" midpoint="20mV" scale="22mV"/>
<reverseRate type="HHExpRate" rate="0.0625per_ms" midpoint="0mV" scale="-80mV"/>
</gateHHrates>
</ionChannelHH>
<ionChannelHH species="k" conductance="10pS" id="kx_rod">
<notes>Single Channel description adapted from Y. Kamiyama, T. O'Sura, S. Usui (1996): Ionic current model of the vertebrate rod photoreceptor, Vision Research.</notes>
<gateHHrates instances="1" id="n">
<forwardRate type="HHExpRate" rate="0.66per_s" midpoint="-49.9mV" scale="11.4mV"/>
<reverseRate type="HHExpRate" rate="0.66per_s" midpoint="-49.9mV" scale="-11.4mV"/>
</gateHHrates>
</ionChannelHH>
<gapJunction conductance="0.5nS" id="rod_rod_gap"/>
<pulseGenerator delay="50ms" duration="200ms" amplitude="0.0032nA" id="pulseGen1"/>
</neuroml>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment