bedtools intersect -abam path/to/input.bam -b path/to/regions.bed > out.bam
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library(shiny) | |
# Define UI for app that draws a histogram ---- | |
ui <- fluidPage( | |
# App title ---- | |
titlePanel("Ciao Shiny!"), | |
# Sidebar layout with input and output definitions ---- | |
sidebarLayout( |
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Retrieving the data from the INCLUDE FHIR Data via the FHIR_resource.
Quick help:
python fhir_trisomy_bridge.py --help
usage: fhir_trisomy_bridge.py [-h] --cavatica_token CAVATICA_TOKEN --cavatica_project CAVATICA_PROJECT
--include_fhir_authentication_cookie INCLUDE_FHIR_AUTHENTICATION_COOKIE
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# SBFS Privileged helper script | |
# Allow root to see projects. Needed if you want to use docker | |
# | |
# Note: export the $SBG_SBFS_MOUNT_POINT variable in your | |
# .bashrc | |
# | |
# For Example: | |
# export SBG_SBFS_MOUNT_POINT=~/sbfs_mount_point | |
# Make sure the `~/sbfs_mount_point` directory exists | |
# |
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/*! | |
* Bootstrap v3.2.0 (http://getbootstrap.com) | |
* Copyright 2011-2014 Twitter, Inc. | |
* Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) | |
*//*! normalize.css v3.0.1 | MIT License | git.io/normalize */html{font-family:sans-serif;-webkit-text-size-adjust:100%;-ms-text-size-adjust:100%}body{margin:0}article,aside,details,figcaption,figure,footer,header,hgroup,main,nav,section,summary{display:block}audio,canvas,progress,video{display:inline-block;vertical-align:baseline}audio:not([controls]){display:none;height:0}[hidden],template{display:none}a{background:0}a:active,a:hover{outline:0}abbr[title]{border-bottom:1px dotted}b,strong{font-weight:700}dfn{font-style:italic}h1{margin:.67em 0;font-size:2em}mark{color:#000;background:#ff0}small{font-size:80%}sub,sup{position:relative;font-size:75%;line-height:0;vertical-align:baseline}sup{top:-.5em}sub{bottom:-.25em}img{border:0}svg:not(:root){overflow:hidden}figure{margin:1em 40px}hr{height:0;-webkit-box-sizing:content-box;-moz-box-sizing:cont |
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function parse_git_dirty { | |
[[ $(git status 2> /dev/null | tail -n1) != "nothing to commit, working tree clean" ]] && echo "*" | |
} | |
function parse_git_branch { | |
git branch --no-color 2> /dev/null | sed -e '/^[^*]/d' -e "s/* \(.*\)/(\1$(parse_git_dirty))/" | |
} | |
export PS1='\u@\h \[\033[1;33m\]\w\[\033[0m\]$(parse_git_branch)$ ' |
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import sevenbridges as sbg | |
c = sbg.Config(profile='cavatica') | |
api = sbg.Api(config=c) | |
bg = api.billing_groups.get(id='14bc19f2-6a6a-4a44-bb07-f86020dad9c0') | |
breakdown = bg.breakdown() | |
for project_breakdown in breakdown.project_breakdown: | |
project_id_parsed = (project_breakdown.href.split("/")[-2:]) | |
project_id = "/".join(project_id_parsed) | |
print(project_id) |
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sudo apt install alien -y | |
sudo alien bluejeans_1.28.9-2_amd64.rpm # or whatever is the file you downloaded from the bluejeans website | |
sudo dpkg -i bluejeans_1.28.9-2_amd64.deb | |
cd /lib/x86_64-linux-gnu | |
#sudo ln -s libudev.so libudev.so.0 | |
sudo ln -s libudev.so.1 libudev.so.0 | |
# now you can launch bluejeans | |
/opt/bluejeans/bluejeans-bin |
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