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maweigert/stardist_noto_setup.sh

Last active March 10, 2020 18:16
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stardist_noto_setup.sh
#!/usr/bin/env bash
source ~/.bashrc
git clone https://github.com/mpicbg-csbd/stardist
my_venvs_create stardist_env
my_venvs_activate stardist_env
pip install tifffile==2019.7.2 # as newer versions somehow wont install on noto
pip install stardist
my_kernels_create py3_stardist "Py3 StarDist"
my_venvs_deactivate
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