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@maximlt
Last active September 29, 2021 09:15
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Create a notebook including a title and some imports and run it in a conda environment with Jupyter Lab
#!/usr/bin/env python3
from datetime import date
import pathlib
import subprocess
import sys
def create_nb(nb_dir: str, extra_title: str = None) -> pathlib.Path:
today = date.today()
title = today.strftime("%B %d, %Y")
fn = today.strftime("%Y-%m-%d")
if extra_title:
title = title + ' - ' + extra_title
fn = fn + '_' + extra_title.replace(' ', '-').lower()
nb_template = r"""
{
"cells": [
{
"cell_type": "markdown",
"id": "2c699017-290e-4066-b15f-7fd34dd133e2",
"metadata": {},
"source": [
"# $title$"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "bd4f7d0b-82ed-4731-a255-023de1b8e6d8",
"metadata": {},
"outputs": [],
"source": [
"import bokeh as bk\n",
"import holoviews as hv\n",
"import numpy as np\n",
"import pandas as pd\n",
"import panel as pn\n",
"import param\n",
"import xarray as xr\n",
"\n",
"for m in [bk, param, hv, pn, np, pd, xr]:\n",
" print(f'{m.__name__} {m.__version__}')\n",
"\n",
"pn.extension()"
]
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.11"
}
},
"nbformat": 4,
"nbformat_minor": 5
}
""".lstrip()
nb_content = nb_template.replace('$title$', title)
nb_dir = pathlib.Path(nb_dir).expanduser()
fp = nb_dir / f'{fn}.ipynb'
i = 1
while fp.exists():
fp = nb_dir / f'{fn}-{i}.ipynb'
i += 1
with open(fp, 'w') as f:
f.write(nb_content)
print(f'Notebook created: {fp}')
return fp
def run_nb(nb_fp: str, conda_env: str, nb_dir: str) -> int:
print(f'Trying to run notebook {nb_fp} in folder {nb_dir} in conda env {conda_env}')
try:
result = subprocess.check_output(['conda', 'run','-n', conda_env, 'jupyter', 'lab', '--notebook-dir', nb_dir, nb_fp])
except subprocess.CalledProcessError as err:
return sys.exit(err.returncode)
return 0
def cli():
import argparse
parser = argparse.ArgumentParser()
parser.add_argument('--env', default='holoviz37')
parser.add_argument('--dir', default='~/work/notebooks')
parser.add_argument('-t', '--extratitle')
args = parser.parse_args()
nb_fp = create_nb(args.dir, args.extratitle)
nb_dir = str(pathlib.Path(args.dir).expanduser())
nb_fp = str(nb_fp)
code = run_nb(nb_fp, args.env, nb_dir)
sys.exit(code)
if __name__ == "__main__":
cli()
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