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maxpietsch / sge_context_queue.ipynb
Created May 15, 2017 10:22
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maxpietsch / annotate_mrview_patch.txt
Created May 15, 2017 20:57
diff --git a/src/gui/mrview/gui_image.cpp b/src/gui/mrview/gui_image.cpp
index 5b63138..fa21df2 100644
--- a/src/gui/mrview/gui_image.cpp
+++ b/src/gui/mrview/gui_image.cpp
@@ -287,7 +287,8 @@ namespace MR
slice_max[plane] = slice_min[plane] - 1.0;
min_max_set();
- if (windowing_reset_required)
+ // hack to autoscale images to correct range
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maxpietsch / # python3 - 2017-08-07_11-01-19.txt
Created August 11, 2017 21:26
python3 on macOS 10.12.6 - Homebrew build logs
Homebrew build logs for python3 on macOS 10.12.6
Build date: 2017-08-07 11:01:19
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maxpietsch / draw_neural_net.py
Created November 1, 2017 18:53 — forked from craffel/draw_neural_net.py
Draw a neural network diagram with matplotlib!
import matplotlib.pyplot as plt
def draw_neural_net(ax, left, right, bottom, top, layer_sizes):
'''
Draw a neural network cartoon using matplotilb.
:usage:
>>> fig = plt.figure(figsize=(12, 12))
>>> draw_neural_net(fig.gca(), .1, .9, .1, .9, [4, 7, 2])
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maxpietsch / fashion_mnist_cnn.py
Created April 8, 2018 20:41 — forked from kashif/fashion_mnist_cnn.py
Fashion Mnist Benchmark
'''Trains a simple convnet on the Zalando MNIST dataset.
Gets to 81.03% test accuracy after 30 epochs
(there is still a lot of margin for parameter tuning).
3 seconds per epoch on a GeForce GTX 980 GPU with CuDNN 5.
'''
from __future__ import print_function
import numpy as np
from mnist import MNIST
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maxpietsch / 3.0_RC3-0-g57e351eb.zip
Last active May 14, 2018 16:43
bottle test
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maxpietsch / add_mrview_app.sh
Created June 25, 2019 08:34
macos mrview as applicatio
#!/usr/bin/env bash
APP=mrview
mkdir -vp ${APP}.app/Contents/MacOS ${APP}.app/Contents/Resources
PATH="$PATH:/usr/libexec" # PlistBuddy in PATH
printf '#!/usr/bin/osascript\ntell application "Terminal"\n\tactivate\n\tdo script "mrview; exit"\nend tell\n' > ${APP}.app/Contents/MacOS/${APP}
chmod +x ${APP}.app/Contents/MacOS/${APP}
PlistBuddy ${APP}.app/Contents/Info.plist -c "add CFBundleDisplayName string ${APP}"
PlistBuddy ${APP}.app/Contents/version.plist -c "add ProjectName string ${APP}"
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maxpietsch / vectorreorient.cpp
Created July 3, 2020 15:39
reorient vector field after transformation
/* Copyright (c) 2008-2020 the MRtrix3 contributors.
*
* This Source Code Form is subject to the terms of the Mozilla Public
* License, v. 2.0. If a copy of the MPL was not distributed with this
* file, You can obtain one at http://mozilla.org/MPL/2.0/.
*
* Covered Software is provided under this License on an "as is"
* basis, without warranty of any kind, either expressed, implied, or
* statutory, including, without limitation, warranties that the
* Covered Software is free of defects, merchantable, fit for a
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maxpietsch / rfplot.py
Created July 3, 2020 23:01
#!/usr/bin/env python3
# tool to visualise angular and l=0 dependency of multiple MRtrix3 response functions
# Author: Maximilian Pietsch
import argparse
import numpy as np
from scipy.special import sph_harm
import matplotlib.pyplot as plt
@maxpietsch
maxpietsch / dwiqc.py
Last active October 13, 2020 15:43
generate screenshots for QC report
#!/usr/bin/env python
#
# generate screenshots for QC report
#
#
# Author: Max Pietsch
# King's College London
# maximilian.pietsch@kcl.ac.uk
#