CLI Script to resave all modules

moduleSave.php

<?php
/**
 * Module Resave Script
 *
 * @copyright  Copyright (C) 2014 Michael Babker. All rights reserved.
 * @license    http://www.gnu.org/licenses/gpl-2.0.txt GNU General Public License Version 2 or Later
 */

// Set flag that this is a parent file.
const _JEXEC = 1;

error_reporting(E_ALL | E_NOTICE);
ini_set('display_errors', 1);

// Load system defines
if (file_exists(dirname(__DIR__) . '/defines.php'))
{
	require_once dirname(__DIR__) . '/defines.php';
}

if (!defined('_JDEFINES'))
{
	define('JPATH_BASE', dirname(__DIR__));
	require_once JPATH_BASE . '/includes/defines.php';
}

require_once JPATH_LIBRARIES . '/import.legacy.php';
require_once JPATH_LIBRARIES . '/cms.php';

// Import the configuration.
require_once JPATH_CONFIGURATION . '/configuration.php';

/**
 * Module Resave Script
 *
 * @since  1.0
 */
class ModuleResave extends JApplicationCli
{
	/**
	 * Method to run the application routines.
	 *
	 * @return  void
	 *
	 * @since   1.0
	 */
	public function doExecute()
	{
		$db = JFactory::getDbo();

		$db->setQuery(
			$db->getQuery(true)
				->select($db->quoteName('id'))
				->from($db->quoteName('#__modules'))
		);

		try
		{
			$modules = $db->loadObjectList();
		}
		catch (RuntimeException $e)
		{
			$this->out('Error retrieving module IDs: ' . $e->getMessage());
			$this->close();
		}

		foreach ($modules as $module)
		{
			/**  @type  JTableModule  $table */
			$table = JTable::getInstance('Module');
			$table->load($module->id);

			try
			{
				$table->store();
			}
			catch (Exception $e)
			{
				$this->out('Error storing module ID ' . $module->id . ': ' . $e->getMessage());
				exit();
			}
		}
	}
}

// Global exception handler, this way we can get decent messages if need be
try
{
	JApplicationCli::getInstance('ModuleResave')->execute();
}
catch (Exception $e)
{
	fwrite(STDOUT, "\nERROR: " . $e->getMessage() . "\n");
	fwrite(STDOUT, "\n" . $e->getTraceAsString() . "\n");

	exit($e->getCode() ? : 255);
}