Standard emacs configuration on Ubuntu 16.04 cloud server

emacs-nox.el

;; Load themes
(add-to-list 'custom-theme-load-path "~/.emacs.d/themes/")

(custom-set-variables
 ;; custom-set-variables was added by Custom.
 ;; If you edit it by hand, you could mess it up, so be careful.
 ;; Your init file should contain only one such instance.
 ;; If there is more than one, they won't work right.
 '(ansi-color-faces-vector
   [default bold shadow italic underline bold bold-italic bold])
 '(blink-cursor-mode nil)
 '(c-ignore-auto-fill (quote (cpp)))
 '(column-number-mode t)
 '(comint-move-point-for-output t)
 '(comint-scroll-to-bottom-on-input t)
 '(comint-scroll-to-bottom-on-output t)
 '(comment-auto-fill-only-comments t)
 '(compilation-scroll-output (quote first-error))
 '(cua-enable-cua-keys t)
 '(cua-highlight-region-shift-only t)
 '(cua-keep-region-after-copy t)
 '(cua-mode t nil (cua-base))
 '(cua-normal-cursor-color "black")
 '(cursor-in-non-selected-windows nil)
 '(cursor-type (quote bar))
 '(custom-enabled-themes (quote (mbacou)))
 '(custom-safe-themes
   (quote
    (default)))
 '(delete-selection-mode t)
 '(desktop-save-mode nil)
 '(fancy-splash-image nil)
 '(fci-dash-pattern 0.5)
 '(fci-rule-color "light blue")
 '(fci-rule-use-dashes t)
 '(fill-column 86)
 '(fringe-mode 18 nil (fringe))
 '(global-hl-line-mode t)
 '(global-visual-line-mode nil)
 '(hl-paren-background-colors (quote ("#2492db" "#95a5a6" nil)))
 '(hl-paren-colors (quote ("#ecf0f1" "#ecf0f1" "#c0392b")))
 '(indent-tabs-mode nil)
 '(inhibit-startup-screen t)
 '(initial-frame-alist nil)
 '(initial-major-mode (quote org-mode))
 '(initial-scratch-message nil)
 '(ispell-dictionary "english")
 '(ispell-program-name "aspell")
 '(line-spacing 0.33)
 '(linum-format " %6d ")
 '(main-line-color1 "#222232")
 '(main-line-color2 "#333343")
 '(make-backup-files nil)
 '(make-cursor-line-fully-visible t)
 '(minibuffer-frame-alist nil)
 '(mouse-wheel-follow-mouse nil)
 '(mouse-wheel-progressive-speed nil)
 '(mouse-wheel-scroll-amount (quote (4 ((shift) . 8))))
 '(package-selected-packages
   (quote
    (smex org table sql-indent pcsv json-mode htmlize gh f dired-single csv-mode color-theme auto-complete async)))
 '(powerline-color1 "#222232")
 '(powerline-color2 "#333343")
 '(recentf-menu-before nil)
 '(recentf-mode t)
 '(scroll-bar-mode nil)
 '(scroll-conservatively 10000)
 '(shell-file-name "bash")
 '(shift-select-mode t)
 '(size-indication-mode t)
 '(sml/active-background-color "#34495e")
 '(sml/active-foreground-color "#ecf0f1")
 '(sml/inactive-background-color "#dfe4ea")
 '(sml/inactive-foreground-color "#34495e")
 '(sql-font-lock-buffers (quote all))
 '(tab-width 4)
 '(tooltip-mode nil)
 '(tramp-default-method "sshx")
 '(vc-annotate-background nil)
 '(vc-annotate-color-map
   (quote
    ((20 . "#f36c60")
     (40 . "#ff9800")
     (60 . "#fff59d")
     (80 . "#8bc34a")
     (100 . "#81d4fa")
     (120 . "#4dd0e1")
     (140 . "#b39ddb")
     (160 . "#f36c60")
     (180 . "#ff9800")
     (200 . "#fff59d")
     (220 . "#8bc34a")
     (240 . "#81d4fa")
     (260 . "#4dd0e1")
     (280 . "#b39ddb")
     (300 . "#f36c60")
     (320 . "#ff9800")
     (340 . "#fff59d")
     (360 . "#8bc34a"))))
 '(vc-annotate-very-old-color nil)
 '(visible-bell t)
 '(visible-cursor nil)
 '(visual-line-mode nil t))


(custom-set-faces
 ;; custom-set-faces was added by Custom.
 ;; If you edit it by hand, you could mess it up, so be careful.
 ;; Your init file should contain only one such instance.
 ;; If there is more than one, they won't work right.
 )

;; Add MELPA and other source repos
(package-initialize)
(setq package-archives '(("gnu" . "http://elpa.gnu.org/packages/")
                         ("melpa" . "http://melpa.milkbox.net/packages/")))

;; Add git support
(setq vc-handled-backends (quote (Git)))

;; TeX and AucTeX configuration
(setq tex-PDF-mode t
      tex-auto-save t
      tex-parse-self t)
(add-hook 'LaTeX-mode-hook 'aspell-mode)
(add-hook 'LaTeX-mode-hook 'visual-line-mode t)
(add-hook 'LaTeX-mode-hook 'LaTeX-math-mode)

;; Org configuration
(setq org-export-backends (quote (beamer html latex))
      org-agenda-compact-blocks t
      org-agenda-dim-blocked-tasks nil
      org-agenda-exporter-settings
      '((ps-number-of-columns 2)
        (ps-landscape-mode t)
        (org-agenda-add-entry-text-maxlines 0)
        (htmlize-output-type 'css))
      org-agenda-window-setup 'current-window
      org-agenda-todo-ignore-deadlines t
      org-agenda-todo-ignore-scheduled t
      org-agenda-todo-ignore-with-date t
      org-babel-R-command "R --slave --no-save"
      org-time-stamp-rounding-minutes 15
      org-confirm-babel-evaluate nil
      org-cycle-separator-lines 0
      org-CUA-compatible t
      org-deadline-warning-days 150
      org-descriptive-links nil
      org-export-allow-BIND t
      org-replace-disputed-keys nil
      org-footnote-define-inline +1
      org-footnote-auto-label 'random
      org-footnote-auto-adjust nil
      org-html-doctype "html5"
      org-html-html5-fancy t
      org-export-latex-listings 'listings
      org-export-latex-listings t
      org-insert-heading-respect-content t
      org-latex-tables-booktabs t
      org-list-allow-alphabetical t
      org-list-indent-offset 2
      org-log-done 'date
      org-loop-over-headlines-in-active-region t
      org-read-date-prefer-future nil
      org-reverse-note-order nil
      org-src-fontify-natively t
      org-src-tab-acts-natively t
      org-src-window-setup 'current-window
      org-support-shift-select t
      org-tags-column -83
      org-timeline-show-empty-dates nil
      org-list-demote-modify-bullet '(("+" . "-") ("-" . "+") ("1." . "A.") ("A." . "1."))
      org-latex-to-pdf-process 
      '("pdflatex -interaction nonstopmode %f"
        "pdflatex -interaction nonstopmode %f") ;; for multiple passes
      org-todo-keywords
      '((type "MEET(m)" "|")
        (sequence "TODO(t)" "ACTIVE(a)" "HOLD(h)" "|" "DONE(d)")
        (sequence "|" "CANCELLED(c)")
        (sequence "TOREAD(r)" "|" "READ(R)")
        (sequence "TOWRITE(w)" "|" "WROTE(W)"))
      org-todo-keyword-faces
      '(("MEET" . font-lock-variable-name-face) ("ACTIVE" . org-todo)
        ("TODO" . org-todo) ("HOLD" . font-lock-string-face) ("CANCELED" . org-warning)
        ("DONE" . org-done) 
        ("TOWRITE" . font-lock-type-face) ("WROTE" . org-done)
        ("TOREAD" . font-lock-type-face) ("READ" . org-done)))

(setq org-structure-template-alist
      '(("s" "#+begin_src ?\n\n#+end_src" "<src lang=\"?\">\n\n</src>")
        ("e" "#+begin_example\n?\n#+end_example" "<example>\n?\n</example>")
        ("q" "#+begin_quote\n?\n#+end_quote" "<quote>\n?\n</quote>")
        ("l" "#+begin_latex\n?\n#+end_latex" "<literal style=\"latex\">\n?\n</literal>")
        ("L" "#+latex: " "<literal style=\"latex\">?</literal>")
        ("h" "#+begin_html\n?\n#+end_html" "<literal style=\"html\">\n?\n</literal>")
        ("H" "#+html: " "<literal style=\"html\">?</literal>")
        ("i" "#+index: ?" "#+index: ?")
        ("I" "#+include %file ?" "<include file=%file markup=\"?\">")))

;; Load Org
(provide 'org-capture)
(provide 'ox-html)

(add-to-list 'auto-mode-alist '("\\.org\\'" . org-mode))
(add-hook 'text-mode-hook 'visual-line-mode t)
(add-hook 'org-mode-hook 'visual-line-mode t)
(add-hook 'orgtbl-mode-hook 'truncate-lines t)
(add-hook 'text-mode-hook 'show-paren-mode nil)
(add-hook 'org-mode-hook 'show-paren-mode nil)
(org-babel-do-load-languages  'org-babel-load-languages 
                              '((emacs-lisp . t) (sh . t) (R . t) (python . t) (js . t) (css . t) (sql . t)))

;; E-mail account configuration
(setq user-full-name "Bacou, Melanie"
      user-mail-address "mel@mbacou.com"
      message-signature
      (concat
       "--\n"
       "Melanie BACOU\n"
       "E-mail mel@mbacou.com\n")
      mm-discouraged-alternatives '("text/html" "text/richtext")
      message-generate-headers-first t
      message-kill-buffer-on-exit t
      imap-ssl-program "openssl s_client -ssl3 -quiet -connect %s:%p")

(setq message-send-mail-function 'smtpmail-send-it
      smtpmail-default-smtp-server "mail.mbacou.com"
      smtpmail-smtp-server "mail.mbacou.com"
      smtpmail-smtp-service 465
      smtpmail-local-domain "mbacou.com")

;; CSV
(add-to-list 'auto-mode-alist '("\\.[Cc][Ss][Vv]\\'" . csv-mode))
(autoload 'csv-mode "csv-mode"
  "Major mode for editing comma-separated value files." t)
(setq csv-align-style (quote auto))
(add-hook 'csv-mode-hook 'visual-line-mode 0)

;; Toggle case
(defun toggle-letter-case ()
  "Toggle the letter case of current word or text selection.
   Toggles between: all lower, Init Caps, ALL CAPS."
  (interactive)
  (let (p1 p2 (deactivate-mark nil) (case-fold-search nil))
    (if (region-active-p)
        (setq p1 (region-beginning) p2 (region-end))
      (let ((bds (bounds-of-thing-at-point 'word) ) )
        (setq p1 (car bds) p2 (cdr bds)) ) )
    (when (not (eq last-command this-command))
      (save-excursion
        (goto-char p1)
        (cond
         ((looking-at "[[:lower:]][[:lower:]]") (put this-command 'state "all lower"))
         ((looking-at "[[:upper:]][[:upper:]]") (put this-command 'state "all caps") )
         ((looking-at "[[:upper:]][[:lower:]]") (put this-command 'state "init caps") )
         ((looking-at "[[:lower:]]") (put this-command 'state "all lower"))
         ((looking-at "[[:upper:]]") (put this-command 'state "all caps") )
         (t (put this-command 'state "all lower") ) ) ) )
    (cond
     ((string= "all lower" (get this-command 'state))
      (upcase-initials-region p1 p2) (put this-command 'state "init caps"))
     ((string= "init caps" (get this-command 'state))
      (upcase-region p1 p2) (put this-command 'state "all caps"))
     ((string= "all caps" (get this-command 'state))
      (downcase-region p1 p2) (put this-command 'state "all lower")) )
    ))

;; New empty buffer
(defun xah-new-empty-buffer ()
  "Open a new empty buffer."
  (interactive)
  (let ((buf (generate-new-buffer "untitled")))
    (switch-to-buffer buf)
    (funcall (and initial-major-mode))
    (setq buffer-offer-save t)))

;; Unfill region
(defun unfill-region (beg end)
  "Unfill the region, joining text paragraphs into a single
    logical line.  This is useful, e.g., for use with `visual-line-mode'."
  (interactive "*r")
  (let ((fill-column (point-max))) (fill-region beg end)))

;; Global keyboard shortcuts
(global-unset-key (kbd "C-a"))
(global-set-key (kbd "C-a") 'mark-whole-buffer)
(global-unset-key (kbd "C-o"))
(global-set-key (kbd "C-o") 'find-file)
(global-unset-key (kbd "C-n"))
(global-set-key (kbd "C-n") 'xah-new-empty-buffer)
(global-unset-key (kbd "C-w"))
(global-set-key (kbd "C-w") 'kill-this-buffer)
(global-unset-key (kbd "C-s"))
(global-set-key (kbd "C-s") 'save-buffer)
(global-unset-key (kbd "C-f"))
(global-set-key (kbd "C-f") 'isearch-forward)
(global-unset-key (kbd "M-/"))
(global-set-key (kbd "M-/") 'toggle-letter-case)
(global-set-key (kbd "M-q") 'unfill-region)
(global-unset-key (kbd "C-d"))
(global-set-key (kbd "C-d") 'kill-whole-line)
(global-set-key (kbd "C-<prior>") 'next-buffer)
(global-set-key (kbd "C-<next>") 'previous-buffer)
(global-set-key (kbd "<f2>") 'toggle-truncate-lines)
(global-set-key (kbd "<f5>") 'org-capture)
(global-set-key (kbd "<f6>") 'org-agenda)
(global-set-key (kbd "<f8>") 'toggle-menu-bar-mode-from-frame)
(global-set-key (kbd "<f12>") 'kill-buffer-and-window)
(global-set-key (kbd "C-;") 'comment-or-uncomment-region)
(autoload 'session-jump-to-last-change "session")
(global-set-key (kbd "C-.") 'session-jump-to-last-change)