mboisson/lammps build log

## lammps build log
== 2018-05-04 14:41:06,909 easyblock.py:266 INFO This is EasyBuild 3.6.0-rcdcc7c845d13773d157c10060d2856cda0d1eb90 (framework: 3.6.0-r0f6ef255058df3faf632a6a5bf32696c8bf28b58, easyblocks: 3.6.0-rcdcc7c845d13773d157c10060d2856cda0d1eb90) on host build-node.
== 2018-05-04 14:41:06,909 easyblock.py:272 INFO This is easyblock EB_LAMMPS from module easybuild.easyblocks.lammps (/tmp/eb-oNdpYJ/included-easyblocks/easybuild/easyblocks/lammps.py)
== 2018-05-04 14:41:06,909 easyblock.py:817 INFO Build dir set to /dev/shm/mboisson/avx2/LAMMPS/20170811/iomkl-2016.4.11-omp
== 2018-05-04 14:41:06,909 config.py:485 DEBUG software install path as specified by 'installpath' and 'subdir_software': /home/mboisson/.local/easybuild/software/2017
== 2018-05-04 14:41:06,909 easyconfig.py:1708 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:06,910 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}: {'LAPACK': ['imkl'], 'SCALAPACK': ['imkl'], 'BLAS': ['imkl'], 'FFT': ['imkl'], 'BLACS': ['imkl'], 'MPI': ['OpenMPI'], 'COMPILER': ['icc', 'ifort']}
== 2018-05-04 14:41:06,910 toolchain.py:60 DEBUG Obtained details for 'icc' in toolchain '{'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}' from cache
== 2018-05-04 14:41:06,910 toolchain.py:60 DEBUG Obtained details for 'ifort' in toolchain '{'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}' from cache
== 2018-05-04 14:41:06,910 toolchain.py:107 DEBUG Found compilers [{'external_module_metadata': {}, 'full_mod_name': 'Core/icc/.2016.4.258', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'icc', 'dummy': True, 'short_mod_name': 'icc/.2016.4.258', 'external_module': False, 'versionsuffix': '', 'version': '2016.4.258', 'toolchain_inherited': True, 'hidden': True, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Core/ifort/.2016.4.258', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'ifort', 'dummy': True, 'short_mod_name': 'ifort/.2016.4.258', 'external_module': False, 'versionsuffix': '', 'version': '2016.4.258', 'toolchain_inherited': True, 'hidden': True, 'build_only': False}] for toolchain iomkl ({'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'})
== 2018-05-04 14:41:06,910 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}: {'LAPACK': ['imkl'], 'SCALAPACK': ['imkl'], 'BLAS': ['imkl'], 'FFT': ['imkl'], 'BLACS': ['imkl'], 'MPI': ['OpenMPI'], 'COMPILER': ['icc', 'ifort']}
== 2018-05-04 14:41:06,910 toolchain.py:60 DEBUG Obtained details for 'OpenMPI' in toolchain '{'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}' from cache
== 2018-05-04 14:41:06,911 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}: {'LAPACK': ['imkl'], 'SCALAPACK': ['imkl'], 'BLAS': ['imkl'], 'FFT': ['imkl'], 'BLACS': ['imkl'], 'MPI': ['OpenMPI'], 'COMPILER': ['icc', 'ifort']}
== 2018-05-04 14:41:06,911 easyconfig.py:1714 DEBUG Obtained subdir avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:06,911 easyblock.py:858 INFO Software install dir set to /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:06,911 config.py:485 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /home/mboisson/.local/easybuild/modules/2017
== 2018-05-04 14:41:06,911 easyblock.py:863 INFO Module install dir set to /home/mboisson/.local/easybuild/modules/2017/
== 2018-05-04 14:41:06,911 easyblock.py:251 INFO Init completed for application name LAMMPS version 20170811
== 2018-05-04 14:41:06,911 easyblock.py:2689 INFO Obtained application instance of for LAMMPS (easyblock: None)
== 2018-05-04 14:41:06,911 easyblock.py:2702 DEBUG Skip set to False
== 2018-05-04 14:41:06,911 build_log.py:234 INFO building and installing avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811...
== 2018-05-04 14:41:06,912 easyblock.py:2468 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
== 2018-05-04 14:41:06,912 build_log.py:234 INFO fetching files...
== 2018-05-04 14:41:06,912 easyblock.py:2476 INFO Starting fetch step
== 2018-05-04 14:41:06,912 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:06,912 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:06,912 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:06,912 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:06,912 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:06,912 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:06,912 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:06,912 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:06,913 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:06,913 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:06,913 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:06,913 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:06,913 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:06,913 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:06,913 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:06,913 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:06,913 easyblock.py:2482 INFO Running method fetch_step part of step fetch
== 2018-05-04 14:41:06,913 easyblock.py:1584 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2018-05-04 14:41:06,914 filetools.py:343 INFO Command eb found at /cvmfs/soft.computecanada.ca/easybuild/bin/eb
== 2018-05-04 14:41:06,914 tools.py:263 DEBUG Also considering installation prefix /cvmfs/soft.computecanada.ca/easybuild...
== 2018-05-04 14:41:06,914 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/easyconfigs/easybuild/easyconfigs
== 2018-05-04 14:41:06,914 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/mboisson/.local/easybuild/ebfiles_repo/easybuild/easyconfigs
== 2018-05-04 14:41:06,914 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/ebfiles_repo/easybuild/easyconfigs
== 2018-05-04 14:41:06,914 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-oNdpYJ/included-easyblocks/easybuild/easyconfigs
== 2018-05-04 14:41:06,914 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs
== 2018-05-04 14:41:06,914 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
== 2018-05-04 14:41:06,914 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-05-04 14:41:06,914 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-easyconfigs/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:272 DEBUG Added /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-easyblocks/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-framework/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python27.zip/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/plat-linux2/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/lib-tk/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/lib-old/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/lib-dynload/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/site-packages/setuptools-26.1.1-py2.7.egg/easybuild/easyconfigs
== 2018-05-04 14:41:06,915 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
== 2018-05-04 14:41:06,916 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/easybuild/easyconfigs
== 2018-05-04 14:41:06,916 easyblock.py:648 INFO Found file stable_11Aug2017.tar.gz at /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz
== 2018-05-04 14:41:06,916 easyblock.py:364 DEBUG File /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz found for source stable_11Aug2017.tar.gz
== 2018-05-04 14:41:06,916 easyblock.py:376 INFO Added sources: [{'path': '/home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/mboisson/avx2/LAMMPS/20170811/iomkl-2016.4.11-omp', 'name': 'stable_11Aug2017.tar.gz', 'checksum': None}]
== 2018-05-04 14:41:06,916 filetools.py:343 INFO Command eb found at /cvmfs/soft.computecanada.ca/easybuild/bin/eb
== 2018-05-04 14:41:06,916 tools.py:263 DEBUG Also considering installation prefix /cvmfs/soft.computecanada.ca/easybuild...
== 2018-05-04 14:41:06,916 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/easyconfigs/easybuild/easyconfigs
== 2018-05-04 14:41:06,916 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /home/mboisson/.local/easybuild/ebfiles_repo/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/ebfiles_repo/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-oNdpYJ/included-easyblocks/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-easyconfigs/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:272 DEBUG Added /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-easyblocks/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-framework/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python27.zip/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/easybuild/easyconfigs
== 2018-05-04 14:41:06,917 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/plat-linux2/easybuild/easyconfigs
== 2018-05-04 14:41:06,918 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/lib-tk/easybuild/easyconfigs
== 2018-05-04 14:41:06,918 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/lib-old/easybuild/easyconfigs
== 2018-05-04 14:41:06,918 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/lib-dynload/easybuild/easyconfigs
== 2018-05-04 14:41:06,918 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-05-04 14:41:06,918 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/site-packages/setuptools-26.1.1-py2.7.egg/easybuild/easyconfigs
== 2018-05-04 14:41:06,918 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
== 2018-05-04 14:41:06,918 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /cvmfs/soft.computecanada.ca/easybuild/easybuild/easyconfigs
== 2018-05-04 14:41:06,918 easyblock.py:648 INFO Found file LAMMPS-20170811.patch at /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch
== 2018-05-04 14:41:06,918 easyblock.py:417 DEBUG File /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch found for patch LAMMPS-20170811.patch
== 2018-05-04 14:41:06,918 easyblock.py:442 INFO Added patches: [{'path': '/home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch', 'name': 'LAMMPS-20170811.patch', 'checksum': None}]
== 2018-05-04 14:41:06,918 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-05-04 14:41:07,157 easyblock.py:1635 INFO md5 checksum for /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz: 20f1ea260cc25279fc213f71a1d55439
== 2018-05-04 14:41:07,158 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-05-04 14:41:07,447 easyblock.py:1635 INFO sha256 checksum for /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz: 628cf8eb96086fa37dc028651b97c199cd5a8d579d7d9edb6ab418ac98f2ae81
== 2018-05-04 14:41:07,447 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-05-04 14:41:07,447 easyblock.py:1635 INFO md5 checksum for /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch: eb8d9dcd5a86f20f9e7df2947d1fec3c
== 2018-05-04 14:41:07,448 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-05-04 14:41:07,448 easyblock.py:1635 INFO sha256 checksum for /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch: 629180dfc423def3f456088068142f9a86a06fb315435c44b5554fb560b9a7d4
== 2018-05-04 14:41:07,448 easyconfig.py:1696 DEBUG Determining full module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290> (force_visible: False)
== 2018-05-04 14:41:07,448 easyconfig.py:1674 INFO Replaced software name 'LAMMPS' with 'lammps-omp' when determining module name
== 2018-05-04 14:41:07,448 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}: {'LAPACK': ['imkl'], 'SCALAPACK': ['imkl'], 'BLAS': ['imkl'], 'FFT': ['imkl'], 'BLACS': ['imkl'], 'MPI': ['OpenMPI'], 'COMPILER': ['icc', 'ifort']}
== 2018-05-04 14:41:07,449 toolchain.py:60 DEBUG Obtained details for 'icc' in toolchain '{'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}' from cache
== 2018-05-04 14:41:07,449 toolchain.py:60 DEBUG Obtained details for 'ifort' in toolchain '{'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}' from cache
== 2018-05-04 14:41:07,449 toolchain.py:107 DEBUG Found compilers [{'external_module_metadata': {}, 'full_mod_name': 'Core/icc/.2016.4.258', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'icc', 'dummy': True, 'short_mod_name': 'icc/.2016.4.258', 'external_module': False, 'versionsuffix': '', 'version': '2016.4.258', 'toolchain_inherited': True, 'hidden': True, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Core/ifort/.2016.4.258', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'ifort', 'dummy': True, 'short_mod_name': 'ifort/.2016.4.258', 'external_module': False, 'versionsuffix': '', 'version': '2016.4.258', 'toolchain_inherited': True, 'hidden': True, 'build_only': False}] for toolchain iomkl ({'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'})
== 2018-05-04 14:41:07,449 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}: {'LAPACK': ['imkl'], 'SCALAPACK': ['imkl'], 'BLAS': ['imkl'], 'FFT': ['imkl'], 'BLACS': ['imkl'], 'MPI': ['OpenMPI'], 'COMPILER': ['icc', 'ifort']}
== 2018-05-04 14:41:07,449 toolchain.py:60 DEBUG Obtained details for 'OpenMPI' in toolchain '{'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}' from cache
== 2018-05-04 14:41:07,450 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}: {'LAPACK': ['imkl'], 'SCALAPACK': ['imkl'], 'BLAS': ['imkl'], 'FFT': ['imkl'], 'BLACS': ['imkl'], 'MPI': ['OpenMPI'], 'COMPILER': ['icc', 'ifort']}
== 2018-05-04 14:41:07,450 utilities.py:103 DEBUG Module name avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811 validated
== 2018-05-04 14:41:07,450 easyconfig.py:1703 DEBUG Obtained valid full module name avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:07,450 easyblock.py:1668 INFO Checking dirs that need to be created: ['/home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811', '/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp']
== 2018-05-04 14:41:07,450 filetools.py:1136 DEBUG Not creating existing path /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:07,450 filetools.py:1136 DEBUG Not creating existing path /home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp
== 2018-05-04 14:41:07,450 easyblock.py:2468 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
== 2018-05-04 14:41:07,450 build_log.py:234 INFO creating build dir, resetting environment...
== 2018-05-04 14:41:07,451 easyblock.py:2476 INFO Starting ready step
== 2018-05-04 14:41:07,451 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:07,451 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:07,451 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:07,451 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:07,451 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:07,451 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:07,451 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:07,451 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:07,451 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:07,452 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:07,452 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:07,452 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:07,452 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:07,452 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:07,452 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:07,452 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:07,452 easyblock.py:2482 INFO Running method check_readiness_step part of step ready
== 2018-05-04 14:41:07,452 easyblock.py:1521 DEBUG Desired parallelism specified via 'parallel' build option: 8
== 2018-05-04 14:41:07,452 easyblock.py:1524 INFO Setting parallelism: 8
== 2018-05-04 14:41:07,453 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:07,453 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:07,453 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:07,453 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse list' from /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS
== 2018-05-04 14:41:07,498 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "ZmlsZXMiLCIvaG9tZS9tYm9pc3Nvbi8ubG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIix9";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr: nixpkgs/16.09

== 2018-05-04 14:41:07,498 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse list' ran fine
== 2018-05-04 14:41:07,499 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:07,499 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:07,499 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:07,499 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:07,499 easyblock.py:1529 WARNING Loaded modules detected: ['nixpkgs/16.09']
== 2018-05-04 14:41:07,500 easyconfig.py:621 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'Core/python/2.7.14', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Python', 'dummy': True, 'short_mod_name': 'python/2.7.14', 'external_module': False, 'versionsuffix': '', 'version': '2.7.14', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/hdf5/1.8.18', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'HDF5', 'dummy': False, 'short_mod_name': 'hdf5/1.8.18', 'external_module': False, 'versionsuffix': '', 'version': '1.8.18', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Core/eigen/3.3.2', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Eigen', 'dummy': True, 'short_mod_name': 'eigen/3.3.2', 'external_module': False, 'versionsuffix': '', 'version': '3.3.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/voro++/0.4.6', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'Voro++', 'dummy': False, 'short_mod_name': 'voro++/0.4.6', 'external_module': False, 'versionsuffix': '', 'version': '0.4.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/vtk/6.3.0', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'VTK', 'dummy': False, 'short_mod_name': 'vtk/6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '6.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/kim/1.8.2', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'KIM', 'dummy': False, 'short_mod_name': 'kim/1.8.2', 'external_module': False, 'versionsuffix': '', 'version': '1.8.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6', 'toolchain': {'version': '2016.4.11', 'name': 'iompi'}, 'name': 'FFTW', 'dummy': False, 'short_mod_name': 'fftw-mpi/3.3.6', 'external_module': False, 'versionsuffix': '-mpi', 'version': '3.3.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2016.4.11', 'name': 'iomkl'}, 'name': 'FFmpeg', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '-nix', 'version': '3.1.7', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/netcdf/4.4.1.1', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'netCDF', 'dummy': False, 'short_mod_name': 'netcdf/4.4.1.1', 'external_module': False, 'versionsuffix': '', 'version': '4.4.1.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1', 'toolchain': {'version': '2016.4.11', 'name': 'iomkl'}, 'name': 'QuantumESPRESSO', 'dummy': False, 'short_mod_name': 'quantumespresso/6.1', 'external_module': False, 'versionsuffix': '', 'version': '6.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
== 2018-05-04 14:41:07,500 easyconfig.py:629 INFO filtered out dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2016.4.11', 'name': 'iomkl'}, 'name': 'FFmpeg', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '-nix', 'version': '3.1.7', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}
== 2018-05-04 14:41:07,500 easyconfig.py:630 DEBUG Dependencies AFTER filtering: [{'external_module_metadata': {}, 'full_mod_name': 'Core/python/2.7.14', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Python', 'dummy': True, 'short_mod_name': 'python/2.7.14', 'external_module': False, 'versionsuffix': '', 'version': '2.7.14', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/hdf5/1.8.18', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'HDF5', 'dummy': False, 'short_mod_name': 'hdf5/1.8.18', 'external_module': False, 'versionsuffix': '', 'version': '1.8.18', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Core/eigen/3.3.2', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Eigen', 'dummy': True, 'short_mod_name': 'eigen/3.3.2', 'external_module': False, 'versionsuffix': '', 'version': '3.3.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/voro++/0.4.6', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'Voro++', 'dummy': False, 'short_mod_name': 'voro++/0.4.6', 'external_module': False, 'versionsuffix': '', 'version': '0.4.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/vtk/6.3.0', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'VTK', 'dummy': False, 'short_mod_name': 'vtk/6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '6.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/kim/1.8.2', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'KIM', 'dummy': False, 'short_mod_name': 'kim/1.8.2', 'external_module': False, 'versionsuffix': '', 'version': '1.8.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6', 'toolchain': {'version': '2016.4.11', 'name': 'iompi'}, 'name': 'FFTW', 'dummy': False, 'short_mod_name': 'fftw-mpi/3.3.6', 'external_module': False, 'versionsuffix': '-mpi', 'version': '3.3.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/netcdf/4.4.1.1', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'netCDF', 'dummy': False, 'short_mod_name': 'netcdf/4.4.1.1', 'external_module': False, 'versionsuffix': '', 'version': '4.4.1.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1', 'toolchain': {'version': '2016.4.11', 'name': 'iomkl'}, 'name': 'QuantumESPRESSO', 'dummy': False, 'short_mod_name': 'quantumespresso/6.1', 'external_module': False, 'versionsuffix': '', 'version': '6.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
== 2018-05-04 14:41:07,500 toolchain.py:376 DEBUG add_dependencies: adding toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name': 'Core/python/2.7.14', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Python', 'dummy': True, 'short_mod_name': 'python/2.7.14', 'external_module': False, 'versionsuffix': '', 'version': '2.7.14', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/hdf5/1.8.18', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'HDF5', 'dummy': False, 'short_mod_name': 'hdf5/1.8.18', 'external_module': False, 'versionsuffix': '', 'version': '1.8.18', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Core/eigen/3.3.2', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Eigen', 'dummy': True, 'short_mod_name': 'eigen/3.3.2', 'external_module': False, 'versionsuffix': '', 'version': '3.3.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/voro++/0.4.6', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'Voro++', 'dummy': False, 'short_mod_name': 'voro++/0.4.6', 'external_module': False, 'versionsuffix': '', 'version': '0.4.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/vtk/6.3.0', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'VTK', 'dummy': False, 'short_mod_name': 'vtk/6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '6.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/kim/1.8.2', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'KIM', 'dummy': False, 'short_mod_name': 'kim/1.8.2', 'external_module': False, 'versionsuffix': '', 'version': '1.8.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6', 'toolchain': {'version': '2016.4.11', 'name': 'iompi'}, 'name': 'FFTW', 'dummy': False, 'short_mod_name': 'fftw-mpi/3.3.6', 'external_module': False, 'versionsuffix': '-mpi', 'version': '3.3.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/netcdf/4.4.1.1', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'netCDF', 'dummy': False, 'short_mod_name': 'netcdf/4.4.1.1', 'external_module': False, 'versionsuffix': '', 'version': '4.4.1.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1', 'toolchain': {'version': '2016.4.11', 'name': 'iomkl'}, 'name': 'QuantumESPRESSO', 'dummy': False, 'short_mod_name': 'quantumespresso/6.1', 'external_module': False, 'versionsuffix': '', 'version': '6.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
== 2018-05-04 14:41:07,500 toolchain.py:386 DEBUG add_dependencies: MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:07,500 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:07,501 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:07,501 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:07,501 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse --show-hidden avail ' from /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS
== 2018-05-04 14:41:08,122 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse --show-hidden avail ': stdout: os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "ZmlsZXMiLCIvaG9tZS9tYm9pc3Nvbi8ubG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIix9";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr: allinea-cpu(@ddt-cpu)
allinea-gpu(@ddt-gpu)
arm-forge-cpu(@ddt-cpu)
arm-forge-gpu(@ddt-gpu)
/home/mboisson/modulefiles:
CCEnv
/opt/software/modulefiles:
gaussian/g09.e01
gaussian/g16.a03
/home/mboisson/.local/easybuild/modules/2017:
avx2/MPI/intel2016.4/cuda8.0/openmpi2.1/lammps-omp/20170331
avx2/MPI/intel2016.4/cuda8.0/openmpi2.1/lammps-user-intel/20170331
avx2/MPI/intel2016.4/cuda8.0/openmpi2.1/lammps/20170331
avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170331
avx2/MPI/intel2016.4/openmpi2.1/lammps-user-intel/20170331
avx2/MPI/intel2016.4/openmpi2.1/lammps/20170331
Core/materialsstudio/2018
/cvmfs/soft.computecanada.ca/easybuild/modules/2017:
avx/Compiler/gcc4.8/boost/1.60.0
avx/Compiler/gcc4.8/cgal/4.9
avx/Compiler/gcc4.8/cuda/7.5.18
avx/Compiler/gcc4.8/fftw/3.3.6
avx/Compiler/gcc4.8/gsl/1.16
avx/Compiler/gcc4.8/gsl/2.2.1
avx/Compiler/gcc4.8/gsl/2.3
avx/Compiler/gcc4.8/meraculous/2.2.4
avx/Compiler/gcc4.8/metis/5.1.0
avx/Compiler/gcc4.8/openmpi/1.8.8
avx/Compiler/gcc4.8/openmpi/2.1.1
avx/Compiler/gcc4.8/root/5.34.36
avx/Compiler/gcc4.8/spglib/1.9.9
avx/Compiler/gcc5.4/afni/20180404
avx/Compiler/gcc5.4/angsd/0.918
avx/Compiler/gcc5.4/annovar/2017Jul16
avx/Compiler/gcc5.4/appleseed/1.8.1-beta
avx/Compiler/gcc5.4/armadillo/7.950.1
avx/Compiler/gcc5.4/arpack-ng/3.4.0
avx/Compiler/gcc5.4/bamtools/2.4.1
avx/Compiler/gcc5.4/bcftools/1.4
avx/Compiler/gcc5.4/bcftools/1.5
avx/Compiler/gcc5.4/beagle-lib/2.1.2
avx/Compiler/gcc5.4/bedtools/2.26.0
avx/Compiler/gcc5.4/blast+/2.6.0
avx/Compiler/gcc5.4/blat/3.5
avx/Compiler/gcc5.4/boost/1.60.0
avx/Compiler/gcc5.4/boost/1.65.1
avx/Compiler/gcc5.4/bowtie/1.1.2
avx/Compiler/gcc5.4/bowtie2/2.3.0
avx/Compiler/gcc5.4/bwa/0.7.15
avx/Compiler/gcc5.4/canu/1.5
avx/Compiler/gcc5.4/canu/1.6
avx/Compiler/gcc5.4/canvas/1.25
avx/Compiler/gcc5.4/centrifuge/1.0.3-beta
avx/Compiler/gcc5.4/cgal/4.9
avx/Compiler/gcc5.4/chapel-single/1.15.0
avx/Compiler/gcc5.4/chapel-slurm-gasnetrun_ibv/1.15.0
avx/Compiler/gcc5.4/clhep/2.3.1.1
avx/Compiler/gcc5.4/cnvnator/0.3.3
avx/Compiler/gcc5.4/cuda/8.0.44
avx/Compiler/gcc5.4/cuda/9.0.176
avx/Compiler/gcc5.4/cufflinks/2.2.1
avx/Compiler/gcc5.4/diamond/0.9.8
avx/Compiler/gcc5.4/elixir/1.5
avx/Compiler/gcc5.4/erlangotp/20.0
avx/Compiler/gcc5.4/fasttree/2.1.10
avx/Compiler/gcc5.4/fastx-toolkit/0.0.14
avx/Compiler/gcc5.4/fftw/3.3.6
avx/Compiler/gcc5.4/freebayes/1.1.0
avx/Compiler/gcc5.4/gdal/2.1.3
avx/Compiler/gcc5.4/gdal/2.2.1
avx/Compiler/gcc5.4/geant4/10.02.p03
avx/Compiler/gcc5.4/geos/3.6.1
avx/Compiler/gcc5.4/glm/0.9.7.2
avx/Compiler/gcc5.4/glpk/4.61
avx/Compiler/gcc5.4/gmap-gsnap/2017-04-13
avx/Compiler/gcc5.4/gsl/1.16
avx/Compiler/gcc5.4/gsl/2.2.1
avx/Compiler/gcc5.4/gsl/2.3
avx/Compiler/gcc5.4/h4toh5/2.2.2
avx/Compiler/gcc5.4/hdf/4.2.12
avx/Compiler/gcc5.4/hdf5/1.8.18
avx/Compiler/gcc5.4/hmmer/2.3.2
avx/Compiler/gcc5.4/hmmer/3.1b2
avx/Compiler/gcc5.4/htslib/1.4
avx/Compiler/gcc5.4/htslib/1.5
avx/Compiler/gcc5.4/igblast/1.7.0
avx/Compiler/gcc5.4/interproscan/5.23-62.0
avx/Compiler/gcc5.4/iq-tree/1.5.5
avx/Compiler/gcc5.4/jellyfish/2.2.6
avx/Compiler/gcc5.4/libint/1.1.6
avx/Compiler/gcc5.4/libint/2.2.0
avx/Compiler/gcc5.4/libxc/3.0.0
avx/Compiler/gcc5.4/libxsmm/1.8
avx/Compiler/gcc5.4/mafft/7.310
avx/Compiler/gcc5.4/matio/1.5.2
avx/Compiler/gcc5.4/maxbin/2.2.4
avx/Compiler/gcc5.4/metal/2011-03-25
avx/Compiler/gcc5.4/metis/4.0.3
avx/Compiler/gcc5.4/metis/5.1.0
avx/Compiler/gcc5.4/minia/2.0.7
avx/Compiler/gcc5.4/mono/4.6.2.7
avx/Compiler/gcc5.4/mono/5.4.0.56
avx/Compiler/gcc5.4/mothur/1.39.4
avx/Compiler/gcc5.4/mummer-64bit/3.23
avx/Compiler/gcc5.4/mummer/3.23
avx/Compiler/gcc5.4/netcdf-c++/4.2
avx/Compiler/gcc5.4/netcdf-fortran/4.4.4
avx/Compiler/gcc5.4/netcdf/4.4.1.1
avx/Compiler/gcc5.4/octave/4.2.1
avx/Compiler/gcc5.4/opencolorio/1.0.9
avx/Compiler/gcc5.4/opencv/2.4.13.3
avx/Compiler/gcc5.4/opencv/3.3.0
avx/Compiler/gcc5.4/openexr/2.2.1
avx/Compiler/gcc5.4/openimageio/1.8.7
avx/Compiler/gcc5.4/openmpi/1.6.5
avx/Compiler/gcc5.4/openmpi/1.8.8
avx/Compiler/gcc5.4/openmpi/2.0.2
avx/Compiler/gcc5.4/openmpi/2.1.1
avx/Compiler/gcc5.4/osl/1.9.6
avx/Compiler/gcc5.4/pcl/1.8.1
avx/Compiler/gcc5.4/prinseq/0.20.4
avx/Compiler/gcc5.4/prodigal/2.6.3
avx/Compiler/gcc5.4/proj/4.9.3
avx/Compiler/gcc5.4/protobuf/3.3.0
avx/Compiler/gcc5.4/python27-scipy-stack/2017a
avx/Compiler/gcc5.4/python35-scipy-stack/2017a
avx/Compiler/gcc5.4/qhull/2015.2
avx/Compiler/gcc5.4/qrupdate/1.1.2
avx/Compiler/gcc5.4/r-bundle-bioconductor/3.4
avx/Compiler/gcc5.4/r/3.3.3
avx/Compiler/gcc5.4/r/3.4.0
avx/Compiler/gcc5.4/r/3.4.3
avx/Compiler/gcc5.4/racon/20170719
avx/Compiler/gcc5.4/root/5.34.36
avx/Compiler/gcc5.4/root/6.08.02
avx/Compiler/gcc5.4/rstudio-server/1.1.447
avx/Compiler/gcc5.4/samtools/0.1.20
avx/Compiler/gcc5.4/samtools/1.3.1
avx/Compiler/gcc5.4/samtools/1.5
avx/Compiler/gcc5.4/seexpr/2.11
avx/Compiler/gcc5.4/shotmap/1.1
avx/Compiler/gcc5.4/snappy/1.1.3
avx/Compiler/gcc5.4/soapdenovo2/r240
avx/Compiler/gcc5.4/sortmerna/2.1
avx/Compiler/gcc5.4/spades/3.10.1
avx/Compiler/gcc5.4/spglib/1.9.9
avx/Compiler/gcc5.4/stacks/1.45
avx/Compiler/gcc5.4/stacks/1.46
avx/Compiler/gcc5.4/subread/1.5.2
avx/Compiler/gcc5.4/suitesparse/4.5.4
avx/Compiler/gcc5.4/sumaclust/1.0.20
avx/Compiler/gcc5.4/tophat/2.1.1
avx/Compiler/gcc5.4/transdecoder/3.0.1
avx/Compiler/gcc5.4/trimal/1.4
avx/Compiler/gcc5.4/trinity/2.4.0
avx/Compiler/gcc5.4/trinotate/3.0.2
avx/Compiler/gcc6.4/boost/1.65.1
avx/Compiler/gcc6.4/cuda/9.0.176
avx/Compiler/gcc6.4/geos/3.6.1
avx/Compiler/gcc6.4/openblas/0.2.20
avx/Compiler/gcc6.4/openmpi/2.1.1
avx/Compiler/gcc7.3/libconfig/1.7.2
avx/Compiler/intel2016.4/angsd/0.918
avx/Compiler/intel2016.4/annovar/2017Jul16
avx/Compiler/intel2016.4/armadillo/7.950.1
avx/Compiler/intel2016.4/arpack-ng/3.4.0
avx/Compiler/intel2016.4/bamtools/2.4.1
avx/Compiler/intel2016.4/bamutil/1.0.13
avx/Compiler/intel2016.4/bbmap/37.36
avx/Compiler/intel2016.4/bcftools/1.4
avx/Compiler/intel2016.4/bcftools/1.5
avx/Compiler/intel2016.4/beagle-lib/2.1.2
avx/Compiler/intel2016.4/beast/2.4.0
avx/Compiler/intel2016.4/bedtools/2.26.0
avx/Compiler/intel2016.4/blat/3.5
avx/Compiler/intel2016.4/boost/1.60.0
avx/Compiler/intel2016.4/boost/1.63.0
avx/Compiler/intel2016.4/boost/1.65.1
avx/Compiler/intel2016.4/bowtie/1.1.2
avx/Compiler/intel2016.4/bowtie2/2.3.0
avx/Compiler/intel2016.4/bwa/0.7.15
avx/Compiler/intel2016.4/centrifuge/1.0.3-beta
avx/Compiler/intel2016.4/cgal/4.9
avx/Compiler/intel2016.4/clhep/2.3.1.1
avx/Compiler/intel2016.4/cnvnator/0.3.3
avx/Compiler/intel2016.4/cuda/8.0.44
avx/Compiler/intel2016.4/cuda/9.0.176
avx/Compiler/intel2016.4/cufflinks/2.2.1
avx/Compiler/intel2016.4/fasttree/2.1.10
avx/Compiler/intel2016.4/fftw/3.3.6
avx/Compiler/intel2016.4/gamess-us/20170420-R1
avx/Compiler/intel2016.4/gdal/2.1.3
avx/Compiler/intel2016.4/geant4/10.02.p03
avx/Compiler/intel2016.4/geos/3.6.1
avx/Compiler/intel2016.4/glm/0.9.7.2
avx/Compiler/intel2016.4/glpk/4.61
avx/Compiler/intel2016.4/gmap-gsnap/2017-04-13
avx/Compiler/intel2016.4/grackle/2.1
avx/Compiler/intel2016.4/gsl/1.16
avx/Compiler/intel2016.4/gsl/2.2.1
avx/Compiler/intel2016.4/gsl/2.3
avx/Compiler/intel2016.4/h4toh5/2.2.2
avx/Compiler/intel2016.4/hdf/4.2.12
avx/Compiler/intel2016.4/hdf5/1.8.18
avx/Compiler/intel2016.4/hisat2/2.1.0
avx/Compiler/intel2016.4/hmmer/2.3.2
avx/Compiler/intel2016.4/hmmer/3.1b2
avx/Compiler/intel2016.4/htslib/1.4
avx/Compiler/intel2016.4/htslib/1.5
avx/Compiler/intel2016.4/interproscan/5.23-62.0
avx/Compiler/intel2016.4/iq-tree/1.5.5
avx/Compiler/intel2016.4/jags/4.2.0
avx/Compiler/intel2016.4/jellyfish/1.1.11
avx/Compiler/intel2016.4/jellyfish/2.2.6
avx/Compiler/intel2016.4/julia/0.5.1
avx/Compiler/intel2016.4/julia/0.6.0
avx/Compiler/intel2016.4/kim/1.8.2
avx/Compiler/intel2016.4/kraken/0.10.5-beta
avx/Compiler/intel2016.4/libint/1.1.6
avx/Compiler/intel2016.4/libint/2.2.0
avx/Compiler/intel2016.4/libxc/3.0.0
avx/Compiler/intel2016.4/libxsmm/1.8
avx/Compiler/intel2016.4/ls-dyna/9.1
avx/Compiler/intel2016.4/mafft/7.310
avx/Compiler/intel2016.4/matio/1.5.2
avx/Compiler/intel2016.4/metal/2011-03-25
avx/Compiler/intel2016.4/metaphlan/2.2.0
avx/Compiler/intel2016.4/metis/4.0.3
avx/Compiler/intel2016.4/metis/5.1.0
avx/Compiler/intel2016.4/minia/2.0.7
avx/Compiler/intel2016.4/minimac3/2.0.1
avx/Compiler/intel2016.4/molden/5.7
avx/Compiler/intel2016.4/mono/4.6.2.7
avx/Compiler/intel2016.4/mothur/1.39.4
avx/Compiler/intel2016.4/namd-multicore/2.12
avx/Compiler/intel2016.4/namd-verbs/2.12
avx/Compiler/intel2016.4/nco/4.6.6
avx/Compiler/intel2016.4/netcdf-c++/4.2
avx/Compiler/intel2016.4/netcdf-fortran/4.4.4
avx/Compiler/intel2016.4/netcdf/4.4.1.1
avx/Compiler/intel2016.4/ngstools/1.0.1
avx/Compiler/intel2016.4/nlopt/2.4.2
avx/Compiler/intel2016.4/octave/4.2.1
avx/Compiler/intel2016.4/openbabel/2.4.1
avx/Compiler/intel2016.4/openmpi/1.6.5
avx/Compiler/intel2016.4/openmpi/1.8.8
avx/Compiler/intel2016.4/openmpi/2.0.2
avx/Compiler/intel2016.4/openmpi/2.1.1
avx/Compiler/intel2016.4/pear/0.9.10
avx/Compiler/intel2016.4/plink/1.07
avx/Compiler/intel2016.4/proj/4.9.3
avx/Compiler/intel2016.4/python27-scipy-stack/2017a
avx/Compiler/intel2016.4/python35-scipy-stack/2017a
avx/Compiler/intel2016.4/qhull/2015.2
avx/Compiler/intel2016.4/qrupdate/1.1.2
avx/Compiler/intel2016.4/r/3.3.3
avx/Compiler/intel2016.4/r/3.4.0
avx/Compiler/intel2016.4/r/3.4.3
avx/Compiler/intel2016.4/rnammer/1.2
avx/Compiler/intel2016.4/root/5.34.36
avx/Compiler/intel2016.4/rstudio-server/1.1.206
avx/Compiler/intel2016.4/rstudio-server/1.1.447
avx/Compiler/intel2016.4/samtools/0.1.20
avx/Compiler/intel2016.4/samtools/1.3.1
avx/Compiler/intel2016.4/samtools/1.5
avx/Compiler/intel2016.4/soapdenovo2/r240
avx/Compiler/intel2016.4/sortmerna/2.1
avx/Compiler/intel2016.4/spglib/1.9.9
avx/Compiler/intel2016.4/sspace-longread/1-1
avx/Compiler/intel2016.4/stacks/1.45
avx/Compiler/intel2016.4/stacks/1.46
avx/Compiler/intel2016.4/suitesparse/4.5.4
avx/Compiler/intel2016.4/sumaclust/1.0.20
avx/Compiler/intel2016.4/superlu/5.1.1
avx/Compiler/intel2016.4/tabix/0.2.6
avx/Compiler/intel2016.4/theano/0.9.0
avx/Compiler/intel2016.4/tophat/2.1.1
avx/Compiler/intel2016.4/trimal/1.4
avx/Compiler/intel2016.4/trinity/2.4.0
avx/Compiler/intel2016.4/udunits/2.2.24
avx/Compiler/intel2016.4/vcftools/0.1.14
avx/Compiler/intel2016.4/vmd/1.9.3
avx/Compiler/intel2016.4/voro++/0.4.6
avx/Compiler/intel2016.4/vsearch/2.4.3
avx/Compiler/intel2016.4/vtk/6.3.0
avx/Compiler/intel2016.4/xcrysden/1.5.60
avx/Compiler/intel2016.4/xerces-c++/3.1.1
avx/Compiler/intel2017.1/armadillo/7.950.1
avx/Compiler/intel2017.1/arpack-ng/3.4.0
avx/Compiler/intel2017.1/bamtools/2.4.1
avx/Compiler/intel2017.1/bcftools/1.4
avx/Compiler/intel2017.1/beagle-lib/2.1.2
avx/Compiler/intel2017.1/bedtools/2.26.0
avx/Compiler/intel2017.1/blat/3.5
avx/Compiler/intel2017.1/boost/1.60.0
avx/Compiler/intel2017.1/bowtie/1.1.2
avx/Compiler/intel2017.1/bowtie2/2.3.0
avx/Compiler/intel2017.1/bwa/0.7.15
avx/Compiler/intel2017.1/cgal/4.9
avx/Compiler/intel2017.1/cufflinks/2.2.1
avx/Compiler/intel2017.1/fftw/3.3.6
avx/Compiler/intel2017.1/gdal/2.1.3
avx/Compiler/intel2017.1/geos/3.6.1
avx/Compiler/intel2017.1/glpk/4.61
avx/Compiler/intel2017.1/gsl/1.16
avx/Compiler/intel2017.1/gsl/2.2.1
avx/Compiler/intel2017.1/gsl/2.3
avx/Compiler/intel2017.1/h4toh5/2.2.2
avx/Compiler/intel2017.1/hdf/4.2.12
avx/Compiler/intel2017.1/hdf5/1.8.18
avx/Compiler/intel2017.1/htslib/1.4
avx/Compiler/intel2017.1/jags/4.2.0
avx/Compiler/intel2017.1/jellyfish/2.2.6
avx/Compiler/intel2017.1/libint/1.1.6
avx/Compiler/intel2017.1/libint/2.2.0
avx/Compiler/intel2017.1/libxc/3.0.0
avx/Compiler/intel2017.1/libxsmm/1.8
avx/Compiler/intel2017.1/metis/5.1.0
avx/Compiler/intel2017.1/molden/5.7
avx/Compiler/intel2017.1/netcdf-c++/4.2
avx/Compiler/intel2017.1/netcdf-fortran/4.4.4
avx/Compiler/intel2017.1/netcdf/4.4.1.1
avx/Compiler/intel2017.1/octave/4.2.1
avx/Compiler/intel2017.1/openmpi/2.0.2
avx/Compiler/intel2017.1/openmpi/2.1.1
avx/Compiler/intel2017.1/proj/4.9.3
avx/Compiler/intel2017.1/python27-scipy-stack/2017a
avx/Compiler/intel2017.1/python35-scipy-stack/2017a
avx/Compiler/intel2017.1/qhull/2015.2
avx/Compiler/intel2017.1/qrupdate/1.1.2
avx/Compiler/intel2017.1/r/3.3.3
avx/Compiler/intel2017.1/root/5.34.36
avx/Compiler/intel2017.1/samtools/0.1.20
avx/Compiler/intel2017.1/samtools/1.3.1
avx/Compiler/intel2017.1/spglib/1.9.9
avx/Compiler/intel2017.1/stacks/1.45
avx/Compiler/intel2017.1/suitesparse/4.5.4
avx/Compiler/intel2017.1/tophat/2.1.1
avx/Compiler/intel2017.5/geos/3.6.1
avx/Compiler/pgi17.3/cuda/8.0.44
avx/Compiler/pgi17.3/openmpi/2.0.2
avx/Compiler/pgi17.3/openmpi/2.1.1
avx/CUDA/gcc5.4/cuda8.0/caffe2/0.8.1
avx/CUDA/gcc5.4/cuda8.0/cudnn/5.1
avx/CUDA/gcc5.4/cuda8.0/cudnn/6.0
avx/CUDA/gcc5.4/cuda8.0/cudnn/7.0
avx/CUDA/gcc5.4/cuda8.0/libgpuarray/0.6.9
avx/CUDA/gcc5.4/cuda8.0/magma/2.2.0
avx/CUDA/gcc5.4/cuda8.0/megahit/1.1.1
avx/CUDA/gcc5.4/cuda8.0/nextgenmap/0.5.0
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sse3/MPI/intel2017.1/openmpi2.1/scotch/6.0.4
sse3/MPI/pgi17.3/openmpi2.0/hpl/2.2
sse3/MPI/pgi17.3/openmpi2.1/hpl/2.2
/home/mboisson/.local/easybuild/modules/2017/Core:
materialsstudio/2018
/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:
abaqus/6.14.1
admixture/1.3.0
allinea/.7.1
ansys/17.2
ansys/18.2
ascp/3.5.4
bazel/0.5.2
bazel/0.7.0
bazel/0.11.1
bioperl/1.7.1
bolt-lmm/2.2
ccsm/4_0_a02
cellranger/2.1.0
cesm/1_2_2
circos/0.69-6
clang/3.8.1
clang/3.9.0
cmake/.3.7.2
comsol/5.3a
cst/2017
cst/2018
ddt-cpu/7.1
ddt-gpu/7.1
eclipse/4.6.0
eigen/3.2.2
eigen/3.2.10
eigen/3.3.2
fast-gbs/2017-01-25
fastqc/0.11.5
fastsimcoal2/2.6.0.3
fdtd_solutions/8.19.1438
feko/2018
flex/2.5.39
fluent/18.2
foss/.2016.4.088
foss/.2017.5.211
fpc/3.0.0
freesurfer/5.3.0
g2clib/1.6.0
g2lib/1.4.0
gatk-queue/3.8-0
gatk/3.7
gatk/3.8
gatk/4.0.0.0
gcc/4.8.5
gcc/5.4.0
gcc/6.4.0
gcc/7.3.0
gcccore/.4.8.5
gcccore/.5.4.0
gcccore/.6.4.0
gcccore/.7.3.0
gcccuda/.2016.4
gcccuda/.2016.4.90
gcccuda/.2017.5.90
gmkl/.2016.4
gmkl/.2017.5
gmkl/.2018.1
gmklc/.2016.4
gomkl/.2016.4
gomkl/.2016.4.11
gomkl/.2017.5.211
gomklc/.2016.4.11.8
gompi/.2015.85.11
gompi/.2016.4
gompi/.2016.4.11
gompi/.2016.4.088
gompi/.2017.5.211
gompic/.2016.4.11.8
gompic/.2017.5.211.90
goolfc/.2017.5.211.90
hfss/18.2
icc/.2013_sp1.6.214
icc/.2016.4.258
icc/.2017.1.132
icc/.2017.5.239
iccifortcuda/.2016.4
iccifortcuda/.2016.4.90
iccifortcuda/.2017.5.90
ifort/.2013_sp1.6.214
ifort/.2016.4.258
ifort/.2017.1.132
ifort/.2017.5.239
iimkl/.2014.6
iimkl/.2016.4
iimkl/.2017.1
iimkl/.2017.5
iimklc/.2016.4
iimklc/.2016.4.90
iimklc/.2017.5.90
iimpi/.2017.5
imkl/11.1.4.214
imkl/11(@imkl/11.3.4.258)
imkl/11.3.4.258
imkl/2017(@imkl/2017.1.132)
imkl/2017.1.132
imkl/2017.4.239
imkl/2018.1.163
impute2/2.3.2
intel/.2017.5
intel/2014.6
intel/16(@intel/2016.4)
intel/2016(@intel/2016.4)
intel/2016.4
intel/17(@intel/2017.1)
intel/2017(@intel/2017.1)
intel/2017.1
intel/2017.5
iomkl/.2014.6.11
iomkl/.2016.4
iomkl/.2016.4.11
iomkl/.2017.1
iomkl/.2017.1.11
iomkl/.2017.5.211
iomklc/.2016.4
iomklc/.2016.4.11
iomklc/.2016.4.11.90
iomklc/.2017.5.211.90
iompi/.2014.6.11
iompi/.2016.3.165
iompi/.2016.3.188
iompi/.2016.3.1107
iompi/.2016.4
iompi/.2016.4.11
iompi/.2017.1
iompi/.2017.1.11
iompi/.2017.5.211
iompic/.2016.4
iompic/.2016.4.11
iompic/.2016.4.11.90
iompic/.2017.5.211.90
ipp/9.0.4
ipp/2017.1.132
jasper/1.900.1
java/1.7.0_80
java/1.8.0_121
libgtextutils/0.7
links/1.8.5
mach/1.0.18
manta/1.2.2
mariadb/10.1.21
matlab/2016b
matlab/2017a
matlab/2018a
maven/3.5.0
mcr/R2013a
mcr/R2013b
mcr/R2014a
mcr/R2014b
mcr/R2015a
mcr/R2015b
mcr/R2016a
mcr/R2016b
mcr/R2017a
mcr/R2017b
mcr/R2018a
metabat/2.12.1
minimac2/2014.9.15
mixcr/2.1.5
mixcr/2.1.10
nek5000/17.0
networkx/1.1
networkx/2.1
oasys-ls-dyna/14.1
parallel/20160722
perl/5.16.3
perl/5.22.2
perl/5.22.4
perl4-corelibs/0.003
pgi/17.3
picard/2.1.1
picard/2.10.7
picard/2.17.3
pilon/1.22
plink/1.9b_4.1-x86_64
plink/1.9b_5.2-x86_64
pmkl/.2017.1
pomkl/.2017.1
pomkl/.2017.1.11
pompi/.2017.1
pompi/.2017.1.11
postgresql/9.6.6
postgresql/10.2
pplacer/1.1.alpha19
protobuf/3.3.0
pypy/5.8
python/2.7.13
python/2(@python/2.7.14)
python/2.7(@python/2.7.14)
python/2.7.14
python/3.5.2
python/3.5(@python/3.5.4)
python/3.5.4
python/3(@python/3.6.3)
python/3.6(@python/3.6.3)
python/3.6.3
qt/3.3.8
qt/4.8.7
qt/5.6.1
qt/5.10.1
recon/1.08
repeatscout/1.0.5
ruby/2.3.1
rubygems/2.3.1
sambamba/0.6.7
sbt/1.1.1
scipy-stack/2017b
signalp/4.1f
snpeff/4.3t
spark/2.1.0
spark/2.1.1
spark/2.2.0
spark/2.2.1
spark/2.3.0
sra-toolkit/2.8.2-1
sspace_basic/2.1.1
starccm-mixed/11.06.011
starccm-mixed/12.04.011
starccm/11.06.011-R8
starccm/12.04.011-R8
supernova/2.0.0
tbb/2017.2.132
tcl/8.5.19
tmhmm/2.0c
transrate/1.0.3
trf/4.09
trimmomatic/0.36
xerces-c++/3.1.1
/cvmfs/soft.computecanada.ca/custom/modules:
librt-compat/centos7
nixpkgs/16.09
singularity/2.3
singularity/2.4
singularity/2.5
StdEnv/2016.4

== 2018-05-04 14:41:08,122 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse --show-hidden avail ' ran fine
== 2018-05-04 14:41:08,122 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:08,123 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:08,123 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:08,123 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:08,136 modules.py:443 DEBUG 'module available ' gave 2592 answers: ['CCEnv', 'Core/abaqus/6.14.1', 'Core/admixture/1.3.0', 'Core/allinea/.7.1', 'Core/ansys/17.2', 'Core/ansys/18.2', 'Core/ascp/3.5.4', 'Core/bazel/0.11.1', 'Core/bazel/0.5.2', 'Core/bazel/0.7.0', 'Core/bioperl/1.7.1', 'Core/bolt-lmm/2.2', 'Core/ccsm/4_0_a02', 'Core/cellranger/2.1.0', 'Core/cesm/1_2_2', 'Core/circos/0.69-6', 'Core/clang/3.8.1', 'Core/clang/3.9.0', 'Core/cmake/.3.7.2', 'Core/comsol/5.3a', 'Core/cst/2017', 'Core/cst/2018', 'Core/ddt-cpu/7.1', 'Core/ddt-gpu/7.1', 'Core/eclipse/4.6.0', 'Core/eigen/3.2.10', 'Core/eigen/3.2.2', 'Core/eigen/3.3.2', 'Core/fast-gbs/2017-01-25', 'Core/fastqc/0.11.5', 'Core/fastsimcoal2/2.6.0.3', 'Core/fdtd_solutions/8.19.1438', 'Core/feko/2018', 'Core/flex/2.5.39', 'Core/fluent/18.2', 'Core/foss/.2016.4.088', 'Core/foss/.2017.5.211', 'Core/fpc/3.0.0', 'Core/freesurfer/5.3.0', 'Core/g2clib/1.6.0', 'Core/g2lib/1.4.0', 'Core/gatk-queue/3.8-0', 'Core/gatk/3.7', 'Core/gatk/3.8', 'Core/gatk/4.0.0.0', 'Core/gcc/4.8.5', 'Core/gcc/5.4.0', 'Core/gcc/6.4.0', 'Core/gcc/7.3.0', 'Core/gcccore/.4.8.5', 'Core/gcccore/.5.4.0', 'Core/gcccore/.6.4.0', 'Core/gcccore/.7.3.0', 'Core/gcccuda/.2016.4', 'Core/gcccuda/.2016.4.90', 'Core/gcccuda/.2017.5.90', 'Core/gmkl/.2016.4', 'Core/gmkl/.2017.5', 'Core/gmkl/.2018.1', 'Core/gmklc/.2016.4', 'Core/gomkl/.2016.4', 'Core/gomkl/.2016.4.11', 'Core/gomkl/.2017.5.211', 'Core/gomklc/.2016.4.11.8', 'Core/gompi/.2015.85.11', 'Core/gompi/.2016.4', 'Core/gompi/.2016.4.088', 'Core/gompi/.2016.4.11', 'Core/gompi/.2017.5.211', 'Core/gompic/.2016.4.11.8', 'Core/gompic/.2017.5.211.90', 'Core/goolfc/.2017.5.211.90', 'Core/hfss/18.2', 'Core/icc/.2013_sp1.6.214', 'Core/icc/.2016.4.258', 'Core/icc/.2017.1.132', 'Core/icc/.2017.5.239', 'Core/iccifortcuda/.2016.4', 'Core/iccifortcuda/.2016.4.90', 'Core/iccifortcuda/.2017.5.90', 'Core/ifort/.2013_sp1.6.214', 'Core/ifort/.2016.4.258', 'Core/ifort/.2017.1.132', 'Core/ifort/.2017.5.239', 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'sse3/MPI/intel2016.4/openmpi2.1/vtk/8.0.0', 'sse3/MPI/intel2016.4/openmpi2.1/wps/3.8.0', 'sse3/MPI/intel2016.4/openmpi2.1/wps/3.8.1', 'sse3/MPI/intel2016.4/openmpi2.1/wrf-fire/20170625', 'sse3/MPI/intel2016.4/openmpi2.1/wrf/3.8.0', 'sse3/MPI/intel2016.4/openmpi2.1/wrf/3.8.1', 'sse3/MPI/intel2016.4/openmpi2.1/yaxt/0.5.1', 'sse3/MPI/intel2017.1/openmpi2.0/abyss/1.9.0', 'sse3/MPI/intel2017.1/openmpi2.0/boost-mpi/1.60.0', 'sse3/MPI/intel2017.1/openmpi2.0/cp2k/4.1', 'sse3/MPI/intel2017.1/openmpi2.0/fftw-mpi/3.3.6', 'sse3/MPI/intel2017.1/openmpi2.0/gromacs/5.1.4', 'sse3/MPI/intel2017.1/openmpi2.0/hdf5-mpi/1.8.18', 'sse3/MPI/intel2017.1/openmpi2.0/hpl/2.2', 'sse3/MPI/intel2017.1/openmpi2.0/igraph/0.7.1', 'sse3/MPI/intel2017.1/openmpi2.0/mrbayes/3.2.6', 'sse3/MPI/intel2017.1/openmpi2.0/netcdf-c++-mpi/4.2', 'sse3/MPI/intel2017.1/openmpi2.0/netcdf-c++4-mpi/4.3.0', 'sse3/MPI/intel2017.1/openmpi2.0/netcdf-fortran-mpi/4.4.4', 'sse3/MPI/intel2017.1/openmpi2.0/netcdf-mpi/4.4.1.1', 'sse3/MPI/intel2017.1/openmpi2.0/openfoam/4.1', 'sse3/MPI/intel2017.1/openmpi2.0/paraview-offscreen/5.3.0', 'sse3/MPI/intel2017.1/openmpi2.0/paraview/5.3.0', 'sse3/MPI/intel2017.1/openmpi2.0/petsc-64bits/3.7.5', 'sse3/MPI/intel2017.1/openmpi2.0/petsc/3.7.5', 'sse3/MPI/intel2017.1/openmpi2.0/plumed/2.3.0', 'sse3/MPI/intel2017.1/openmpi2.0/python27-mpi4py/2.0.0', 'sse3/MPI/intel2017.1/openmpi2.0/python35-mpi4py/2.0.0', 'sse3/MPI/intel2017.1/openmpi2.0/scotch/6.0.4', 'sse3/MPI/intel2017.1/openmpi2.0/shengbte/1.1.1', 'sse3/MPI/intel2017.1/openmpi2.1/abyss/1.9.0', 'sse3/MPI/intel2017.1/openmpi2.1/boost-mpi/1.60.0', 'sse3/MPI/intel2017.1/openmpi2.1/cp2k/4.1', 'sse3/MPI/intel2017.1/openmpi2.1/fftw-mpi/3.3.6', 'sse3/MPI/intel2017.1/openmpi2.1/gromacs/5.1.4', 'sse3/MPI/intel2017.1/openmpi2.1/hdf5-mpi/1.8.18', 'sse3/MPI/intel2017.1/openmpi2.1/hpl/2.2', 'sse3/MPI/intel2017.1/openmpi2.1/igraph/0.7.1', 'sse3/MPI/intel2017.1/openmpi2.1/mrbayes/3.2.6', 'sse3/MPI/intel2017.1/openmpi2.1/netcdf-c++-mpi/4.2', 'sse3/MPI/intel2017.1/openmpi2.1/netcdf-c++4-mpi/4.3.0', 'sse3/MPI/intel2017.1/openmpi2.1/netcdf-fortran-mpi/4.4.4', 'sse3/MPI/intel2017.1/openmpi2.1/netcdf-mpi/4.4.1.1', 'sse3/MPI/intel2017.1/openmpi2.1/openfoam/4.1', 'sse3/MPI/intel2017.1/openmpi2.1/paraview-offscreen/5.3.0', 'sse3/MPI/intel2017.1/openmpi2.1/paraview/5.3.0', 'sse3/MPI/intel2017.1/openmpi2.1/petsc-64bits/3.7.5', 'sse3/MPI/intel2017.1/openmpi2.1/petsc/3.7.5', 'sse3/MPI/intel2017.1/openmpi2.1/plumed/2.3.0', 'sse3/MPI/intel2017.1/openmpi2.1/python27-mpi4py/2.0.0', 'sse3/MPI/intel2017.1/openmpi2.1/python35-mpi4py/2.0.0', 'sse3/MPI/intel2017.1/openmpi2.1/scotch/6.0.4', 'sse3/MPI/pgi17.3/openmpi2.0/hpl/2.2', 'sse3/MPI/pgi17.3/openmpi2.1/hpl/2.2', 'sspace_basic/2.1.1', 'starccm-mixed/11.06.011', 'starccm-mixed/12.04.011', 'starccm/11.06.011-R8', 'starccm/12.04.011-R8', 'supernova/2.0.0', 'tbb/2017.2.132', 'tcl/8.5.19', 'tmhmm/2.0c', 'transrate/1.0.3', 'trf/4.09', 'trimmomatic/0.36', 'xerces-c++/3.1.1']
== 2018-05-04 14:41:08,136 modules.py:447 DEBUG Cached result for 'module avail' with key '('MODULEPATH=/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules', 'lmod', '--show-hidden')': ['CCEnv', 'Core/abaqus/6.14.1', 'Core/admixture/1.3.0', 'Core/allinea/.7.1', 'Core/ansys/17.2', 'Core/ansys/18.2', 'Core/ascp/3.5.4', 'Core/bazel/0.11.1', 'Core/bazel/0.5.2', 'Core/bazel/0.7.0', 'Core/bioperl/1.7.1', 'Core/bolt-lmm/2.2', 'Core/ccsm/4_0_a02', 'Core/cellranger/2.1.0', 'Core/cesm/1_2_2', 'Core/circos/0.69-6', 'Core/clang/3.8.1', 'Core/clang/3.9.0', 'Core/cmake/.3.7.2', 'Core/comsol/5.3a', 'Core/cst/2017', 'Core/cst/2018', 'Core/ddt-cpu/7.1', 'Core/ddt-gpu/7.1', 'Core/eclipse/4.6.0', 'Core/eigen/3.2.10', 'Core/eigen/3.2.2', 'Core/eigen/3.3.2', 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'sse3/MPI/intel2016.4/openmpi2.1/nwchem/6.6.revision27746', 'sse3/MPI/intel2016.4/openmpi2.1/openfoam/3.0.1', 'sse3/MPI/intel2016.4/openmpi2.1/openfoam/4.1', 'sse3/MPI/intel2016.4/openmpi2.1/openfoam/5.0', 'sse3/MPI/intel2016.4/openmpi2.1/osu-micro-benchmarks/5.3.2', 'sse3/MPI/intel2016.4/openmpi2.1/p4est/1.1', 'sse3/MPI/intel2016.4/openmpi2.1/paraview-offscreen-gpu/5.4.0', 'sse3/MPI/intel2016.4/openmpi2.1/paraview-offscreen/5.3.0', 'sse3/MPI/intel2016.4/openmpi2.1/paraview/5.3.0', 'sse3/MPI/intel2016.4/openmpi2.1/parmetis/4.0.3', 'sse3/MPI/intel2016.4/openmpi2.1/petsc-64bits/3.7.5', 'sse3/MPI/intel2016.4/openmpi2.1/petsc-debug/3.8.2', 'sse3/MPI/intel2016.4/openmpi2.1/petsc/3.7.5', 'sse3/MPI/intel2016.4/openmpi2.1/petsc/3.8.2', 'sse3/MPI/intel2016.4/openmpi2.1/plumed/2.3.0', 'sse3/MPI/intel2016.4/openmpi2.1/plumed/2.3.2', 'sse3/MPI/intel2016.4/openmpi2.1/pnetcdf/1.8.1', 'sse3/MPI/intel2016.4/openmpi2.1/python27-mpi4py/2.0.0', 'sse3/MPI/intel2016.4/openmpi2.1/python35-mpi4py/2.0.0', 'sse3/MPI/intel2016.4/openmpi2.1/quantumespresso/6.0', 'sse3/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1', 'sse3/MPI/intel2016.4/openmpi2.1/repasthpc/2.2.0', 'sse3/MPI/intel2016.4/openmpi2.1/rosetta/3.8', 'sse3/MPI/intel2016.4/openmpi2.1/scotch/6.0.4', 'sse3/MPI/intel2016.4/openmpi2.1/shengbte/1.1.1', 'sse3/MPI/intel2016.4/openmpi2.1/siesta/4.0', 'sse3/MPI/intel2016.4/openmpi2.1/su2/5.0.0', 'sse3/MPI/intel2016.4/openmpi2.1/trans-abyss/1.5.5', 'sse3/MPI/intel2016.4/openmpi2.1/trilinos/12.10.1', 'sse3/MPI/intel2016.4/openmpi2.1/vtk/8.0.0', 'sse3/MPI/intel2016.4/openmpi2.1/wps/3.8.0', 'sse3/MPI/intel2016.4/openmpi2.1/wps/3.8.1', 'sse3/MPI/intel2016.4/openmpi2.1/wrf-fire/20170625', 'sse3/MPI/intel2016.4/openmpi2.1/wrf/3.8.0', 'sse3/MPI/intel2016.4/openmpi2.1/wrf/3.8.1', 'sse3/MPI/intel2016.4/openmpi2.1/yaxt/0.5.1', 'sse3/MPI/intel2017.1/openmpi2.0/abyss/1.9.0', 'sse3/MPI/intel2017.1/openmpi2.0/boost-mpi/1.60.0', 'sse3/MPI/intel2017.1/openmpi2.0/cp2k/4.1', 'sse3/MPI/intel2017.1/openmpi2.0/fftw-mpi/3.3.6', 'sse3/MPI/intel2017.1/openmpi2.0/gromacs/5.1.4', 'sse3/MPI/intel2017.1/openmpi2.0/hdf5-mpi/1.8.18', 'sse3/MPI/intel2017.1/openmpi2.0/hpl/2.2', 'sse3/MPI/intel2017.1/openmpi2.0/igraph/0.7.1', 'sse3/MPI/intel2017.1/openmpi2.0/mrbayes/3.2.6', 'sse3/MPI/intel2017.1/openmpi2.0/netcdf-c++-mpi/4.2', 'sse3/MPI/intel2017.1/openmpi2.0/netcdf-c++4-mpi/4.3.0', 'sse3/MPI/intel2017.1/openmpi2.0/netcdf-fortran-mpi/4.4.4', 'sse3/MPI/intel2017.1/openmpi2.0/netcdf-mpi/4.4.1.1', 'sse3/MPI/intel2017.1/openmpi2.0/openfoam/4.1', 'sse3/MPI/intel2017.1/openmpi2.0/paraview-offscreen/5.3.0', 'sse3/MPI/intel2017.1/openmpi2.0/paraview/5.3.0', 'sse3/MPI/intel2017.1/openmpi2.0/petsc-64bits/3.7.5', 'sse3/MPI/intel2017.1/openmpi2.0/petsc/3.7.5', 'sse3/MPI/intel2017.1/openmpi2.0/plumed/2.3.0', 'sse3/MPI/intel2017.1/openmpi2.0/python27-mpi4py/2.0.0', 'sse3/MPI/intel2017.1/openmpi2.0/python35-mpi4py/2.0.0', 'sse3/MPI/intel2017.1/openmpi2.0/scotch/6.0.4', 'sse3/MPI/intel2017.1/openmpi2.0/shengbte/1.1.1', 'sse3/MPI/intel2017.1/openmpi2.1/abyss/1.9.0', 'sse3/MPI/intel2017.1/openmpi2.1/boost-mpi/1.60.0', 'sse3/MPI/intel2017.1/openmpi2.1/cp2k/4.1', 'sse3/MPI/intel2017.1/openmpi2.1/fftw-mpi/3.3.6', 'sse3/MPI/intel2017.1/openmpi2.1/gromacs/5.1.4', 'sse3/MPI/intel2017.1/openmpi2.1/hdf5-mpi/1.8.18', 'sse3/MPI/intel2017.1/openmpi2.1/hpl/2.2', 'sse3/MPI/intel2017.1/openmpi2.1/igraph/0.7.1', 'sse3/MPI/intel2017.1/openmpi2.1/mrbayes/3.2.6', 'sse3/MPI/intel2017.1/openmpi2.1/netcdf-c++-mpi/4.2', 'sse3/MPI/intel2017.1/openmpi2.1/netcdf-c++4-mpi/4.3.0', 'sse3/MPI/intel2017.1/openmpi2.1/netcdf-fortran-mpi/4.4.4', 'sse3/MPI/intel2017.1/openmpi2.1/netcdf-mpi/4.4.1.1', 'sse3/MPI/intel2017.1/openmpi2.1/openfoam/4.1', 'sse3/MPI/intel2017.1/openmpi2.1/paraview-offscreen/5.3.0', 'sse3/MPI/intel2017.1/openmpi2.1/paraview/5.3.0', 'sse3/MPI/intel2017.1/openmpi2.1/petsc-64bits/3.7.5', 'sse3/MPI/intel2017.1/openmpi2.1/petsc/3.7.5', 'sse3/MPI/intel2017.1/openmpi2.1/plumed/2.3.0', 'sse3/MPI/intel2017.1/openmpi2.1/python27-mpi4py/2.0.0', 'sse3/MPI/intel2017.1/openmpi2.1/python35-mpi4py/2.0.0', 'sse3/MPI/intel2017.1/openmpi2.1/scotch/6.0.4', 'sse3/MPI/pgi17.3/openmpi2.0/hpl/2.2', 'sse3/MPI/pgi17.3/openmpi2.1/hpl/2.2', 'sspace_basic/2.1.1', 'starccm-mixed/11.06.011', 'starccm-mixed/12.04.011', 'starccm/11.06.011-R8', 'starccm/12.04.011-R8', 'supernova/2.0.0', 'tbb/2017.2.132', 'tcl/8.5.19', 'tmhmm/2.0c', 'transrate/1.0.3', 'trf/4.09', 'trimmomatic/0.36', 'xerces-c++/3.1.1']
== 2018-05-04 14:41:08,139 easyconfig.py:621 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'Core/python/2.7.14', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Python', 'dummy': True, 'short_mod_name': 'python/2.7.14', 'external_module': False, 'versionsuffix': '', 'version': '2.7.14', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/hdf5/1.8.18', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'HDF5', 'dummy': False, 'short_mod_name': 'hdf5/1.8.18', 'external_module': False, 'versionsuffix': '', 'version': '1.8.18', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Core/eigen/3.3.2', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Eigen', 'dummy': True, 'short_mod_name': 'eigen/3.3.2', 'external_module': False, 'versionsuffix': '', 'version': '3.3.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/voro++/0.4.6', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'Voro++', 'dummy': False, 'short_mod_name': 'voro++/0.4.6', 'external_module': False, 'versionsuffix': '', 'version': '0.4.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/vtk/6.3.0', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'VTK', 'dummy': False, 'short_mod_name': 'vtk/6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '6.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/kim/1.8.2', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'KIM', 'dummy': False, 'short_mod_name': 'kim/1.8.2', 'external_module': False, 'versionsuffix': '', 'version': '1.8.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6', 'toolchain': {'version': '2016.4.11', 'name': 'iompi'}, 'name': 'FFTW', 'dummy': False, 'short_mod_name': 'fftw-mpi/3.3.6', 'external_module': False, 'versionsuffix': '-mpi', 'version': '3.3.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2016.4.11', 'name': 'iomkl'}, 'name': 'FFmpeg', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '-nix', 'version': '3.1.7', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/netcdf/4.4.1.1', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'netCDF', 'dummy': False, 'short_mod_name': 'netcdf/4.4.1.1', 'external_module': False, 'versionsuffix': '', 'version': '4.4.1.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1', 'toolchain': {'version': '2016.4.11', 'name': 'iomkl'}, 'name': 'QuantumESPRESSO', 'dummy': False, 'short_mod_name': 'quantumespresso/6.1', 'external_module': False, 'versionsuffix': '', 'version': '6.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
== 2018-05-04 14:41:08,139 easyconfig.py:629 INFO filtered out dependency {'external_module_metadata': {}, 'full_mod_name': None, 'toolchain': {'version': '2016.4.11', 'name': 'iomkl'}, 'name': 'FFmpeg', 'dummy': False, 'short_mod_name': None, 'external_module': False, 'versionsuffix': '-nix', 'version': '3.1.7', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}
== 2018-05-04 14:41:08,139 easyconfig.py:630 DEBUG Dependencies AFTER filtering: [{'external_module_metadata': {}, 'full_mod_name': 'Core/python/2.7.14', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Python', 'dummy': True, 'short_mod_name': 'python/2.7.14', 'external_module': False, 'versionsuffix': '', 'version': '2.7.14', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/hdf5/1.8.18', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'HDF5', 'dummy': False, 'short_mod_name': 'hdf5/1.8.18', 'external_module': False, 'versionsuffix': '', 'version': '1.8.18', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Core/eigen/3.3.2', 'toolchain': {'version': '', 'name': 'dummy'}, 'name': 'Eigen', 'dummy': True, 'short_mod_name': 'eigen/3.3.2', 'external_module': False, 'versionsuffix': '', 'version': '3.3.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/voro++/0.4.6', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'Voro++', 'dummy': False, 'short_mod_name': 'voro++/0.4.6', 'external_module': False, 'versionsuffix': '', 'version': '0.4.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/vtk/6.3.0', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'VTK', 'dummy': False, 'short_mod_name': 'vtk/6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '6.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/kim/1.8.2', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'KIM', 'dummy': False, 'short_mod_name': 'kim/1.8.2', 'external_module': False, 'versionsuffix': '', 'version': '1.8.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6', 'toolchain': {'version': '2016.4.11', 'name': 'iompi'}, 'name': 'FFTW', 'dummy': False, 'short_mod_name': 'fftw-mpi/3.3.6', 'external_module': False, 'versionsuffix': '-mpi', 'version': '3.3.6', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/Compiler/intel2016.4/netcdf/4.4.1.1', 'toolchain': {'version': '2016.4', 'name': 'iccifort'}, 'name': 'netCDF', 'dummy': False, 'short_mod_name': 'netcdf/4.4.1.1', 'external_module': False, 'versionsuffix': '', 'version': '4.4.1.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1', 'toolchain': {'version': '2016.4.11', 'name': 'iomkl'}, 'name': 'QuantumESPRESSO', 'dummy': False, 'short_mod_name': 'quantumespresso/6.1', 'external_module': False, 'versionsuffix': '', 'version': '6.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
== 2018-05-04 14:41:08,140 easyblock.py:2482 INFO Running method make_builddir part of step ready
== 2018-05-04 14:41:08,140 easyblock.py:829 INFO Changing build dir to /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:08,140 easyblock.py:832 INFO Overriding 'cleanupoldinstall' (to False), 'cleanupoldbuild' (to True) and 'keeppreviousinstall' because we're building in the installation directory.
== 2018-05-04 14:41:08,140 easyblock.py:883 INFO Found old directory /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:09,038 filetools.py:1204 INFO Path /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811 successfully removed.
== 2018-05-04 14:41:09,039 easyblock.py:890 INFO Removed old directory /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:09,039 filetools.py:1108 INFO Creating directory /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811 (parents: True, set_gid: False, sticky: False)
== 2018-05-04 14:41:09,039 easyblock.py:2482 INFO Running method env_reset_changes part of step ready
== 2018-05-04 14:41:09,039 easyblock.py:2482 INFO Running method handle_iterate_opts part of step ready
== 2018-05-04 14:41:09,039 easyblock.py:2468 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2018-05-04 14:41:09,039 build_log.py:234 INFO unpacking...
== 2018-05-04 14:41:09,039 easyblock.py:2476 INFO Starting source step
== 2018-05-04 14:41:09,040 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:09,040 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:09,040 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:09,040 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:09,040 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:09,040 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:09,040 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:09,040 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:09,040 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:09,040 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:09,041 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:09,041 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:09,041 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:09,041 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:09,041 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:09,041 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:09,041 easyblock.py:2482 INFO Running method checksum_step part of step source
== 2018-05-04 14:41:09,041 easyblock.py:1682 INFO Checksum verification for /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz using None passed.
== 2018-05-04 14:41:09,041 easyblock.py:1682 INFO Checksum verification for /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch using None passed.
== 2018-05-04 14:41:09,042 easyblock.py:2482 INFO Running method extract_step part of step source
== 2018-05-04 14:41:09,042 easyblock.py:1693 INFO Unpacking source stable_11Aug2017.tar.gz
== 2018-05-04 14:41:09,042 filetools.py:1136 DEBUG Not creating existing path /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:09,042 filetools.py:309 DEBUG Unpacking /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz in directory /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811.
== 2018-05-04 14:41:09,043 run.py:135 DEBUG run_cmd: Output of "tar xzf /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz  --strip-components=1 " will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-9PRUx3.log
== 2018-05-04 14:41:09,043 run.py:173 DEBUG run_cmd: running cmd tar xzf /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz  --strip-components=1  (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811)
== 2018-05-04 14:41:09,043 run.py:192 INFO running cmd: tar xzf /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz  --strip-components=1
== 2018-05-04 14:41:12,026 run.py:508 DEBUG cmd "tar xzf /home/mboisson/.local/easybuild/sources/l/LAMMPS/stable_11Aug2017.tar.gz  --strip-components=1 " exited with exit code 0 and output:

== 2018-05-04 14:41:12,027 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:41:12,028 filetools.py:740 DEBUG Last dir list ['LICENSE', 'README', 'bench', 'doc', 'examples', 'lib', 'potentials', 'python', 'src', 'tools']
== 2018-05-04 14:41:12,028 filetools.py:741 DEBUG Possible new dir /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811 found
== 2018-05-04 14:41:12,028 easyblock.py:2468 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2018-05-04 14:41:12,028 build_log.py:234 INFO patching...
== 2018-05-04 14:41:12,028 easyblock.py:2476 INFO Starting patch step
== 2018-05-04 14:41:12,028 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:12,028 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:12,028 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:12,029 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:12,029 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:12,029 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:12,029 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:12,029 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:12,029 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:12,029 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:12,029 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:12,029 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:12,029 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:12,029 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:12,030 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:12,030 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:12,030 easyblock.py:2482 INFO Running method patch_step part of step patch
== 2018-05-04 14:41:12,030 easyblock.py:1705 INFO Applying patch LAMMPS-20170811.patch
== 2018-05-04 14:41:12,030 easyblock.py:1718 DEBUG Source index: 0; patch level: None; source path suffix: ; copy patch: <module 'copy' from '/cvmfs/soft.computecanada.ca/nix/store/xfah919wxfiw9sr5c43ycqj7aixj53lg-python-2.7.13-env/lib/python2.7/copy.pyo'>
== 2018-05-04 14:41:12,030 easyblock.py:1723 DEBUG Determine begin path for patch LAMMPS-20170811.patch: /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:12,030 easyblock.py:1732 DEBUG Applying patch {'path': '/home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch', 'md5': 'eb8d9dcd5a86f20f9e7df2947d1fec3c', 'name': 'LAMMPS-20170811.patch', 'sha256': '629180dfc423def3f456088068142f9a86a06fb315435c44b5554fb560b9a7d4', 'checksum': None} in path /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:12,032 filetools.py:913 DEBUG Guessed patch level 1 for patch /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch
== 2018-05-04 14:41:12,032 run.py:173 DEBUG run_cmd: running cmd patch -b -p1 -i /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811)
== 2018-05-04 14:41:12,032 run.py:192 INFO running cmd: patch -b -p1 -i /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch
== 2018-05-04 14:41:12,075 run.py:508 DEBUG cmd "patch -b -p1 -i /home/mboisson/git/easybuild-easyconfigs/easybuild/easyconfigs/l/LAMMPS/LAMMPS-20170811.patch" exited with exit code 0 and output:
patching file lib/atc/Makefile.lammps.installed
patching file lib/atc/Makefile.serial
patching file lib/awpmd/Makefile.lammps.installed
patching file lib/colvars/Makefile.icc
patching file lib/kim/Makefile.lammps
patching file lib/meam/Makefile.lammps.ifort
patching file lib/molfile/Makefile.lammps
patching file lib/molfile/molfile_plugin.h
patching file lib/molfile/vmdplugin.h
patching file lib/python/Makefile.lammps.python2.7
patching file lib/qmmm/Makefile.ifort
patching file lib/smd/Makefile.lammps
patching file lib/voronoi/Makefile.lammps
patching file lib/vtk/Makefile.lammps
patching file src/MAKE/Makefile.mpi
patching file src/MAKE/OPTIONS/Makefile.icc_openmpi
patching file src/MAKE/OPTIONS/Makefile.intel_cpu_openmpi

== 2018-05-04 14:41:12,075 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:41:12,076 easyblock.py:2468 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
== 2018-05-04 14:41:12,076 build_log.py:234 INFO preparing...
== 2018-05-04 14:41:12,076 easyblock.py:2476 INFO Starting prepare step
== 2018-05-04 14:41:12,076 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:12,076 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:12,076 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:12,076 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:12,076 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:12,076 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:12,077 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:12,077 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:12,077 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:12,077 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:12,077 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:12,077 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:12,077 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:12,077 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:12,077 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:12,077 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:12,077 easyblock.py:2482 INFO Running method prepare_step part of step prepare
== 2018-05-04 14:41:12,078 modules.py:487 DEBUG checking whether hidden module Core/iomkl/.2016.4.11 exists via 'show'...
== 2018-05-04 14:41:12,078 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:12,078 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:12,078 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:12,078 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python show Core/iomkl/.2016.4.11' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:12,564 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python show Core/iomkl/.2016.4.11': stdout: os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "ZmlsZXMiLCIvaG9tZS9tYm9pc3Nvbi8ubG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIix9";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr: --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
   /cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.


More information
================
 - Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
]])
whatis("Description: Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.")
whatis("Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/")
conflict("iomkl")
load("icc/.2016.4.258")
load("ifort/.2016.4.258")
load("intel/2016.4")
load("openmpi/2.1.1")
load("imkl/11.3.4.258")
setenv("EBROOTIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11")
setenv("EBVERSIONIOMKL","2016.4.11")
setenv("EBDEVELIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11/easybuild/Core-iomkl-.2016.4.11-easybuild-devel")


== 2018-05-04 14:41:12,564 modules.py:559 DEBUG Cached result for 'module show Core/iomkl/.2016.4.11' with key '('MODULEPATH=/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules', 'lmod', 'Core/iomkl/.2016.4.11')': os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "ZmlsZXMiLCIvaG9tZS9tYm9pc3Nvbi8ubG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIix9";
os.environ["_ModuleTable_Sz_"] = "2";
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
   /cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.


More information
================
 - Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
]])
whatis("Description: Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.")
whatis("Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/")
conflict("iomkl")
load("icc/.2016.4.258")
load("ifort/.2016.4.258")
load("intel/2016.4")
load("openmpi/2.1.1")
load("imkl/11.3.4.258")
setenv("EBROOTIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11")
setenv("EBVERSIONIOMKL","2016.4.11")
setenv("EBDEVELIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11/easybuild/Core-iomkl-.2016.4.11-easybuild-devel")


== 2018-05-04 14:41:12,565 toolchain.py:580 DEBUG Loading toolchain module and dependencies...
== 2018-05-04 14:41:12,565 config.py:485 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /home/mboisson/.local/easybuild/modules/2017
== 2018-05-04 14:41:12,565 filetools.py:1136 DEBUG Not creating existing path /home/mboisson/.local/easybuild/modules/2017/Core
== 2018-05-04 14:41:12,565 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/home/mboisson/.local/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:12,565 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:12,566 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:12,566 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python use /home/mboisson/.local/easybuild/modules/2017/Core' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:13,061 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python use /home/mboisson/.local/easybuild/modules/2017/Core': stdout: os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "ZmlsZXMiLCIvaG9tZS9tYm9pc3Nvbi8ubG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlIiwiL2hvbWUvbWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIix9";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr:
== 2018-05-04 14:41:13,062 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python use /home/mboisson/.local/easybuild/modules/2017/Core' ran fine
== 2018-05-04 14:41:13,062 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:13,062 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:13,063 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:13,063 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:13,063 modules.py:331 DEBUG $MODULEPATH after set_mod_paths: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:13,063 toolchain.py:495 DEBUG Loading module for toolchain: iomkl/.2016.4.11
== 2018-05-04 14:41:13,063 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:13,063 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:13,064 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:13,064 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse list' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:13,113 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "ZmlsZXMiLCIvaG9tZS9tYm9pc3Nvbi8ubG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlIiwiL2hvbWUvbWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIix9";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr: nixpkgs/16.09

== 2018-05-04 14:41:13,113 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse list' ran fine
== 2018-05-04 14:41:13,114 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:13,114 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:13,114 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:13,114 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:13,114 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:13,114 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:13,115 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:13,115 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load iomkl/.2016.4.11' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:13,900 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load iomkl/.2016.4.11': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["EBDEVELGCCCORE"] = "/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/easybuild/Core-gcccore-.5.4.0-easybuild-devel";
os.environ["EBDEVELICC"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/easybuild/Core-icc-.2016.4.258-easybuild-devel";
os.environ["EBDEVELICCIFORT"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/intel/2016.4/easybuild/Core-intel-2016.4-easybuild-devel";
os.environ["EBDEVELIFORT"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/easybuild/Core-ifort-.2016.4.258-easybuild-devel";
os.environ["EBDEVELIMKL"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/easybuild/Core-imkl-11.3.4.258-easybuild-devel";
os.environ["EBDEVELIOMKL"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11/easybuild/Core-iomkl-.2016.4.11-easybuild-devel";
os.environ["EBDEVELOPENMPI"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/easybuild/avx2-Compiler-intel2016.4-openmpi-2.1.1-easybuild-devel";
os.environ["EBROOTGCCCORE"] = "/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0";
os.environ["EBROOTICC"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258";
os.environ["EBROOTICCIFORT"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/intel/2016.4";
os.environ["EBROOTIFORT"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258";
os.environ["EBROOTIMKL"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258";
os.environ["EBROOTIOMKL"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11";
os.environ["EBROOTOPENMPI"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1";
os.environ["EBVERSIONGCCCORE"] = "5.4.0";
os.environ["EBVERSIONICC"] = "2016.4.258";
os.environ["EBVERSIONICCIFORT"] = "2016.4";
os.environ["EBVERSIONIFORT"] = "2016.4.258";
os.environ["EBVERSIONIMKL"] = "11.3.4.258";
os.environ["EBVERSIONIOMKL"] = "2016.4.11";
os.environ["EBVERSIONOPENMPI"] = "2.1.1";
os.environ["INTEL_LICENSE_FILE"] = "/cvmfs/soft.computecanada.ca/config/licenses/intel/computecanada.lic";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib";
os.environ["LMOD_FAMILY_COMPILER"] = "intel";
os.environ["LMOD_FAMILY_COMPILER_VERSION"] = "2016.4";
os.environ["LMOD_FAMILY_MPI"] = "openmpi";
os.environ["LMOD_FAMILY_MPI_VERSION"] = "2.1.1";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;imkl/11.3.4.258:1;iomkl/.2016.4.11:1";
os.environ["LOADEDMODULES"] = "nixpkgs/16.09:gcccore/.5.4.0:icc/.2016.4.258:ifort/.2016.4.258:intel/2016.4:openmpi/2.1.1:imkl/11.3.4.258:iomkl/.2016.4.11";
os.environ["MANPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/share/man::";
os.environ["MIC_LD_LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/mic:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64_lin_mic";
os.environ["MKLROOT"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl";
os.environ["MKL_EXAMPLES"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/examples/";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["NLSPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/idb/intel64/locale/%l_%t/%N:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/idb/intel64/locale/%l_%t/%N:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/idb/intel64/locale/%l_%t/%N";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin";
os.environ["PKG_CONFIG_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib/pkgconfig:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/pkgconfig";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "ZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlIiwiL2hvbWUvbWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIix9";
os.environ["_ModuleTable_Sz_"] = "7";
; stderr:
== 2018-05-04 14:41:13,900 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load iomkl/.2016.4.11' ran fine
== 2018-05-04 14:41:13,902 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:13,902 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:13,902 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:13,902 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:13,902 toolchain.py:525 DEBUG Loading modules for dependencies: ['python/2.7.14', 'hdf5/1.8.18', 'eigen/3.3.2', 'voro++/0.4.6', 'vtk/6.3.0', 'kim/1.8.2', 'fftw-mpi/3.3.6', 'netcdf/4.4.1.1', 'quantumespresso/6.1']
== 2018-05-04 14:41:13,902 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:13,903 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:13,903 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:13,903 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse list' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:13,974 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "ZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlIiwiL2hvbWUvbWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIix9";
os.environ["_ModuleTable_Sz_"] = "7";
; stderr: nixpkgs/16.09
gcccore/.5.4.0
icc/.2016.4.258
ifort/.2016.4.258
intel/2016.4
openmpi/2.1.1
imkl/11.3.4.258
iomkl/.2016.4.11

== 2018-05-04 14:41:13,974 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python --terse list' ran fine
== 2018-05-04 14:41:13,975 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:13,975 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:13,975 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:13,975 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:13,975 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:13,976 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:13,976 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:13,976 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load python/2.7.14' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:14,643 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load python/2.7.14': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["EBDEVELPYTHON"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/easybuild/Core-python-2.7.14-easybuild-devel";
os.environ["EBEXTSLISTPYTHON"] = "setuptools-37.0.0,pip-9.0.1,virtualenv-15.1.0,wheel-0.30.0,readline-6.2.4.1,pysqlite-2.8.3";
os.environ["EBROOTPYTHON"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14";
os.environ["EBVERSIONPYTHON"] = "2.7.14";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;imkl/11.3.4.258:1;iomkl/.2016.4.11:1;python/2.7.14:1";
os.environ["LOADEDMODULES"] = "nixpkgs/16.09:gcccore/.5.4.0:icc/.2016.4.258:ifort/.2016.4.258:intel/2016.4:openmpi/2.1.1:imkl/11.3.4.258:iomkl/.2016.4.11:python/2.7.14";
os.environ["MANPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/share/man::";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin";
os.environ["PIP_CONFIG_FILE"] = "/cvmfs/soft.computecanada.ca/config/python/pip-avx2.conf";
os.environ["PKG_CONFIG_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib/pkgconfig:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib/pkgconfig:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/pkgconfig";
os.environ["PYTHONPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/python/site-packages";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "c2VyTmFtZSJdPSJpZm9ydC8uMjAxNi40LjI1OCIsfSxpbWtsPXtbImZuIl09Ii9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlL2lta2wvMTEuMy40LjI1OC5sdWEiLFsiZnVsbE5hbWUiXT0iaW1rbC8xMS4zLjQuMjU4IixbImxvYWRPcmRlciJdPTcscHJvcFQ9e3R5cGVfPXtbIm1hdGgiXT0xLH0sfSxbInN0YWNrRGVwdGgiXT0xLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJpbWtsLzExLjMuNC4yNTgiLH0saW50ZWw9e1siZm4iXT0iL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUvaW50ZWwvMjAxNi40Lmx1YSIsWyJmdWxsTmFtZSJdPSJpbnRlbC8yMDE2";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2N1c3RvbS9tb2R1bGVzIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsfQ==";
os.environ["_ModuleTable_Sz_"] = "8";
; stderr:
== 2018-05-04 14:41:14,644 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load python/2.7.14' ran fine
== 2018-05-04 14:41:14,645 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:14,645 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:14,645 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:14,645 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:14,645 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:14,646 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:14,646 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:14,646 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load hdf5/1.8.18' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:15,158 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load hdf5/1.8.18': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["EBDEVELHDF5"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/easybuild/avx2-Compiler-intel2016.4-hdf5-1.8.18-easybuild-devel";
os.environ["EBROOTHDF5"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18";
os.environ["EBVERSIONHDF5"] = "1.8.18";
os.environ["HDF5_DIR"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib";
os.environ["LMOD_FAMILY_HDF5"] = "hdf5";
os.environ["LMOD_FAMILY_HDF5_VERSION"] = "1.8.18";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;imkl/11.3.4.258:1;iomkl/.2016.4.11:1;python/2.7.14:1;hdf5/1.8.18:1";
os.environ["LOADEDMODULES"] = "nixpkgs/16.09:gcccore/.5.4.0:icc/.2016.4.258:ifort/.2016.4.258:intel/2016.4:openmpi/2.1.1:imkl/11.3.4.258:iomkl/.2016.4.11:python/2.7.14:hdf5/1.8.18";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "IixbImZ1bGxOYW1lIl09Imlta2wvMTEuMy40LjI1OCIsWyJsb2FkT3JkZXIiXT03LHByb3BUPXt0eXBlXz17WyJtYXRoIl09MSx9LH0sWyJzdGFja0RlcHRoIl09MSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iaW1rbC8xMS4zLjQuMjU4Iix9LGludGVsPXtbImZuIl09Ii9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlL2ludGVsLzIwMTYuNC5sdWEiLFsiZnVsbE5hbWUiXT0iaW50ZWwvMjAxNi40IixbImxvYWRPcmRlciJdPTUscHJvcFQ9e3R5cGVfPXtbInRvb2xzIl09MSx9LH0sWyJzdGFja0RlcHRoIl09MSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iaW50ZWwvMjAxNi40Iix9LGlvbWts";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "ZW5tcGkyLjEiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvYXZ4Mi9Db21waWxlci9pbnRlbDIwMTYuNCIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvaG9tZS9tYm9pc3Nvbi8ubG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlIiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9jdXN0b20vbW9kdWxlcyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIiLH0=";
os.environ["_ModuleTable_Sz_"] = "8";
; stderr:
== 2018-05-04 14:41:15,158 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load hdf5/1.8.18' ran fine
== 2018-05-04 14:41:15,159 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:15,159 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:15,159 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:15,159 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:15,160 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:15,160 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:15,160 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:15,160 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load eigen/3.3.2' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:15,730 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load eigen/3.3.2': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["CPLUS_INCLUDE_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/include";
os.environ["EBDEVELEIGEN"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/easybuild/Core-eigen-3.3.2-easybuild-devel";
os.environ["EBROOTEIGEN"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2";
os.environ["EBVERSIONEIGEN"] = "3.3.2";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;imkl/11.3.4.258:1;iomkl/.2016.4.11:1;python/2.7.14:1;hdf5/1.8.18:1;eigen/3.3.2:1";
os.environ["LOADEDMODULES"] = "nixpkgs/16.09:gcccore/.5.4.0:icc/.2016.4.258:ifort/.2016.4.258:intel/2016.4:openmpi/2.1.1:imkl/11.3.4.258:iomkl/.2016.4.11:python/2.7.14:hdf5/1.8.18:eigen/3.3.2";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "cGkvMi4xLjEubHVhIixbImZ1bGxOYW1lIl09Im9wZW5tcGkvMi4xLjEiLFsibG9hZE9yZGVyIl09Nixwcm9wVD17dHlwZV89e1sibXBpIl09MSx9LH0sWyJzdGFja0RlcHRoIl09MSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0ib3Blbm1waS8yLjEuMSIsfSxweXRob249e1siZm4iXT0iL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUvcHl0aG9uLzIuNy4xNC5sdWEiLFsiZnVsbE5hbWUiXT0icHl0aG9uLzIuNy4xNCIsWyJsb2FkT3JkZXIiXT05LHByb3BUPXt0eXBlXz17WyJ0b29scyJdPTEsfSx9LFsic3RhY2tEZXB0aCJdPTAsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09InB5dGhvbi8yLjcu";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "bi8ubG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlIiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9jdXN0b20vbW9kdWxlcyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIiLH0=";
os.environ["_ModuleTable_Sz_"] = "9";
; stderr:
== 2018-05-04 14:41:15,730 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load eigen/3.3.2' ran fine
== 2018-05-04 14:41:15,731 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:15,731 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:15,731 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:15,731 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:15,731 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:15,732 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:15,732 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:15,732 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load voro++/0.4.6' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:16,300 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load voro++/0.4.6': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include/voro++:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["EBDEVELVOROPLUSPLUS"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/easybuild/avx2-Compiler-intel2016.4-voro++-0.4.6-easybuild-devel";
os.environ["EBROOTVOROPLUSPLUS"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6";
os.environ["EBVERSIONVOROPLUSPLUS"] = "0.4.6";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;imkl/11.3.4.258:1;iomkl/.2016.4.11:1;python/2.7.14:1;hdf5/1.8.18:1;eigen/3.3.2:1;voro++/0.4.6:1";
os.environ["LOADEDMODULES"] = "nixpkgs/16.09:gcccore/.5.4.0:icc/.2016.4.258:ifort/.2016.4.258:intel/2016.4:openmpi/2.1.1:imkl/11.3.4.258:iomkl/.2016.4.11:python/2.7.14:hdf5/1.8.18:eigen/3.3.2:voro++/0.4.6";
os.environ["MANPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/share/man::";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "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";
os.environ["_ModuleTable010_"] = "bW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2N1c3RvbS9tb2R1bGVzIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsfQ==";
os.environ["_ModuleTable_Sz_"] = "10";
; stderr:
== 2018-05-04 14:41:16,301 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load voro++/0.4.6' ran fine
== 2018-05-04 14:41:16,301 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:16,302 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:16,302 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:16,302 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:16,302 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:16,302 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:16,302 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:16,302 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load vtk/6.3.0' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:16,905 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load vtk/6.3.0': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include/voro++:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["EBDEVELVTK"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/easybuild/avx2-Compiler-intel2016.4-vtk-6.3.0-easybuild-devel";
os.environ["EBPYTHONPREFIXES"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0";
os.environ["EBROOTVTK"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0";
os.environ["EBVERSIONVTK"] = "6.3.0";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;imkl/11.3.4.258:1;iomkl/.2016.4.11:1;python/2.7.14:1;hdf5/1.8.18:1;eigen/3.3.2:1;voro++/0.4.6:1;vtk/6.3.0:1";
os.environ["LOADEDMODULES"] = "nixpkgs/16.09:gcccore/.5.4.0:icc/.2016.4.258:ifort/.2016.4.258:intel/2016.4:openmpi/2.1.1:imkl/11.3.4.258:iomkl/.2016.4.11:python/2.7.14:hdf5/1.8.18:eigen/3.3.2:voro++/0.4.6:vtk/6.3.0";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/vtk/6.3.0.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/vtk/6.3.0.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "ImZuIl09Ii9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlL2ludGVsLzIwMTYuNC5sdWEiLFsiZnVsbE5hbWUiXT0iaW50ZWwvMjAxNi40IixbImxvYWRPcmRlciJdPTUscHJvcFQ9e3R5cGVfPXtbInRvb2xzIl09MSx9LH0sWyJzdGFja0RlcHRoIl09MSxbInN0YXR1cyJdPSJhY3RpdmUiLFsidXNlck5hbWUiXT0iaW50ZWwvMjAxNi40Iix9LGlvbWtsPXtbImZuIl09Ii9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlL2lvbWtsLy4yMDE2LjQuMTEubHVhIixbImZ1bGxOYW1lIl09ImlvbWtsLy4yMDE2LjQuMTEiLFsibG9hZE9yZGVyIl09OCxwcm9wVD17fSxbInN0YWNrRGVw";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "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";
os.environ["_ModuleTable010_"] = "eWJ1aWxkL21vZHVsZXMvMjAxNy9hdngyL0NvbXBpbGVyL2ludGVsMjAxNi40IiwiL2hvbWUvbWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2N1c3RvbS9tb2R1bGVzIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsfQ==";
os.environ["_ModuleTable_Sz_"] = "10";
; stderr:
== 2018-05-04 14:41:16,905 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load vtk/6.3.0' ran fine
== 2018-05-04 14:41:16,906 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:16,907 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:16,907 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:16,907 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:16,907 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:16,907 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:16,907 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:16,908 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load kim/1.8.2' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:17,477 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load kim/1.8.2': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include/voro++:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["EBDEVELKIM"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/easybuild/avx2-Compiler-intel2016.4-kim-1.8.2-easybuild-devel";
os.environ["EBROOTKIM"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2";
os.environ["EBVERSIONKIM"] = "1.8.2";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;imkl/11.3.4.258:1;iomkl/.2016.4.11:1;python/2.7.14:1;hdf5/1.8.18:1;eigen/3.3.2:1;voro++/0.4.6:1;vtk/6.3.0:1;kim/1.8.2:1";
os.environ["LOADEDMODULES"] = "nixpkgs/16.09:gcccore/.5.4.0:icc/.2016.4.258:ifort/.2016.4.258:intel/2016.4:openmpi/2.1.1:imkl/11.3.4.258:iomkl/.2016.4.11:python/2.7.14:hdf5/1.8.18:eigen/3.3.2:voro++/0.4.6:vtk/6.3.0:kim/1.8.2";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/vtk/6.3.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/kim/1.8.2.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/vtk/6.3.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/kim/1.8.2.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "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";
os.environ["_ModuleTable010_"] = "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";
os.environ["_ModuleTable011_"] = "NyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNyIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlIiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9jdXN0b20vbW9kdWxlcyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIiLH0=";
os.environ["_ModuleTable_Sz_"] = "11";
; stderr:
== 2018-05-04 14:41:17,478 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load kim/1.8.2' ran fine
== 2018-05-04 14:41:17,479 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:17,479 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:17,479 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:17,479 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:17,479 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:17,479 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:17,479 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:17,479 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load fftw-mpi/3.3.6' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:18,061 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load fftw-mpi/3.3.6': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include/voro++:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["EBDEVELFFTW"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/easybuild/avx2-MPI-intel2016.4-openmpi2.1-fftw-mpi-3.3.6-easybuild-devel";
os.environ["EBROOTFFTW"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6";
os.environ["EBVERSIONFFTW"] = "3.3.6";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib";
os.environ["LMOD_FAMILY_FFTW"] = "fftw-mpi";
os.environ["LMOD_FAMILY_FFTW_VERSION"] = "3.3.6";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;imkl/11.3.4.258:1;iomkl/.2016.4.11:1;python/2.7.14:1;hdf5/1.8.18:1;eigen/3.3.2:1;voro++/0.4.6:1;vtk/6.3.0:1;kim/1.8.2:1;fftw-mpi/3.3.6:1";
os.environ["LOADEDMODULES"] = "nixpkgs/16.09:gcccore/.5.4.0:icc/.2016.4.258:ifort/.2016.4.258:intel/2016.4:openmpi/2.1.1:imkl/11.3.4.258:iomkl/.2016.4.11:python/2.7.14:hdf5/1.8.18:eigen/3.3.2:voro++/0.4.6:vtk/6.3.0:kim/1.8.2:fftw-mpi/3.3.6";
os.environ["MANPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/share/man::";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin";
os.environ["PKG_CONFIG_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib/pkgconfig:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib/pkgconfig:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib/pkgconfig:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/pkgconfig";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/vtk/6.3.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/kim/1.8.2.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/vtk/6.3.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/kim/1.8.2.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "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";
os.environ["_ModuleTable010_"] = "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";
os.environ["_ModuleTable011_"] = "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";
os.environ["_ModuleTable012_"] = "aWxkL21vZHVsZXMvMjAxNy9Db3JlIiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9jdXN0b20vbW9kdWxlcyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIiLH0=";
os.environ["_ModuleTable_Sz_"] = "12";
; stderr:
== 2018-05-04 14:41:18,061 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load fftw-mpi/3.3.6' ran fine
== 2018-05-04 14:41:18,062 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:18,062 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:18,062 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:18,063 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:18,063 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:18,063 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:18,063 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:18,063 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load netcdf/4.4.1.1' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:18,661 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load netcdf/4.4.1.1': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include/voro++:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["EBDEVELHDF5"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/easybuild/avx2-Compiler-intel2016.4-hdf5-1.8.18-easybuild-devel";
os.environ["EBDEVELNETCDF"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/easybuild/avx2-Compiler-intel2016.4-netcdf-4.4.1.1-easybuild-devel";
os.environ["EBROOTHDF5"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18";
os.environ["EBROOTNETCDF"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1";
os.environ["EBVERSIONHDF5"] = "1.8.18";
os.environ["EBVERSIONNETCDF"] = "4.4.1.1";
os.environ["HDF5_DIR"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/lib64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib";
os.environ["LMOD_FAMILY_HDF5"] = "hdf5";
os.environ["LMOD_FAMILY_HDF5_VERSION"] = "1.8.18";
os.environ["LMOD_FAMILY_NETCDF"] = "netcdf";
os.environ["LMOD_FAMILY_NETCDF_VERSION"] = "4.4.1.1";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;imkl/11.3.4.258:1;iomkl/.2016.4.11:1;python/2.7.14:1;eigen/3.3.2:1;voro++/0.4.6:1;vtk/6.3.0:1;kim/1.8.2:1;fftw-mpi/3.3.6:1;hdf5/1.8.18:1;netcdf/4.4.1.1:1";
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os.environ["MANPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/man/common:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/share/man:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/share/man::";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin";
os.environ["PKG_CONFIG_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/lib64/pkgconfig:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib/pkgconfig:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib/pkgconfig:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib/pkgconfig:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib/pkgconfig";
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os.environ["_ModuleTable009_"] = "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";
os.environ["_ModuleTable010_"] = "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";
os.environ["_ModuleTable011_"] = "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";
os.environ["_ModuleTable012_"] = "bXBpMi4xIiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L2F2eDIvQ29tcGlsZXIvaW50ZWwyMDE2LjQiLCIvaG9tZS9tYm9pc3Nvbi8ubG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlIiwiL2hvbWUvbWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTciLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iIix9";
os.environ["_ModuleTable_Sz_"] = "12";
; stderr:
== 2018-05-04 14:41:18,661 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load netcdf/4.4.1.1' ran fine
== 2018-05-04 14:41:18,662 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:18,662 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:18,663 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:18,663 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:18,663 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:18,663 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:18,663 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:18,663 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load quantumespresso/6.1' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:19,279 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load quantumespresso/6.1': stdout: os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include/voro++:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/include";
os.environ["EBDEVELIMKL"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/easybuild/Core-imkl-11.3.4.258-easybuild-devel";
os.environ["EBDEVELQUANTUMESPRESSO"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/easybuild/avx2-MPI-intel2016.4-openmpi2.1-quantumespresso-6.1-easybuild-devel";
os.environ["EBROOTIMKL"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258";
os.environ["EBROOTQUANTUMESPRESSO"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1";
os.environ["EBVERSIONIMKL"] = "11.3.4.258";
os.environ["EBVERSIONQUANTUMESPRESSO"] = "6.1";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/lib64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/compiler/lib/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/lib:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lib";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "nixpkgs/16.09:1;gcccore/.5.4.0:1;icc/.2016.4.258:1;ifort/.2016.4.258:1;intel/2016.4:1;openmpi/2.1.1:1;iomkl/.2016.4.11:1;python/2.7.14:1;eigen/3.3.2:1;voro++/0.4.6:1;vtk/6.3.0:1;kim/1.8.2:1;fftw-mpi/3.3.6:1;hdf5/1.8.18:1;netcdf/4.4.1.1:1;imkl/11.3.4.258:1;quantumespresso/6.1:1";
os.environ["LOADEDMODULES"] = "nixpkgs/16.09:gcccore/.5.4.0:icc/.2016.4.258:ifort/.2016.4.258:intel/2016.4:openmpi/2.1.1:iomkl/.2016.4.11:python/2.7.14:eigen/3.3.2:voro++/0.4.6:vtk/6.3.0:kim/1.8.2:fftw-mpi/3.3.6:hdf5/1.8.18:netcdf/4.4.1.1:imkl/11.3.4.258:quantumespresso/6.1";
os.environ["MIC_LD_LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/mic:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib/intel64_lin_mic";
os.environ["MKLROOT"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl";
os.environ["MKL_EXAMPLES"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/examples/";
os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["NLSPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/idb/intel64/locale/%l_%t/%N:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/idb/intel64/locale/%l_%t/%N:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/idb/intel64/locale/%l_%t/%N";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/WANT/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/upftools:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/vtk/6.3.0.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/kim/1.8.2.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/nixpkgs/16.09.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/gcccore/.5.4.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/icc/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/ifort/.2016.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/intel/2016.4.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/python/2.7.14.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/eigen/3.3.2.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/voro++/0.4.6.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/vtk/6.3.0.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/kim/1.8.2.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/imkl/11.3.4.258.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1.lua";
os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXtbImNvbXBpbGVyIl09ImludGVsIixbImZmdHciXT0iZmZ0dy1tcGkiLFsiaGRmNSJdPSJoZGY1IixbIm1waSJdPSJvcGVubXBpIixbIm5ldGNkZiJdPSJuZXRjZGYiLH0sbVQ9e2VpZ2VuPXtbImZuIl09Ii9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlL2VpZ2VuLzMuMy4yLmx1YSIsWyJmdWxsTmFtZSJdPSJlaWdlbi8zLjMuMiIsWyJsb2FkT3JkZXIiXT05LHByb3BUPXt0eXBlXz17WyJtYXRoIl09MSx9LH0sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJd";
os.environ["_ModuleTable002_"] = "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";
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os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "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";
os.environ["_ModuleTable010_"] = "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";
os.environ["_ModuleTable011_"] = "L2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvYXZ4Mi9Db21waWxlci9pbnRlbDIwMTYuNC92b3JvKysvMC40LjYubHVhIixbImZ1bGxOYW1lIl09InZvcm8rKy8wLjQuNiIsWyJsb2FkT3JkZXIiXT0xMCxwcm9wVD17dHlwZV89e1sibWF0aCJdPTEsfSx9LFsic3RhY2tEZXB0aCJdPTAsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09InZvcm8rKy8wLjQuNiIsfSx2dGs9e1siZm4iXT0iL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L2F2eDIvQ29tcGlsZXIvaW50ZWwyMDE2LjQvdnRrLzYuMy4wLmx1YSIsWyJmdWxsTmFtZSJdPSJ2dGsvNi4zLjAiLFsibG9hZE9yZGVyIl09MTEscHJvcFQ9e3R5cGVfPXtbInZpcyJdPTEsfSx9";
os.environ["_ModuleTable012_"] = "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";
os.environ["_ModuleTable013_"] = "bWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2N1c3RvbS9tb2R1bGVzIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsfQ==";
os.environ["_ModuleTable_Sz_"] = "13";
; stderr:
== 2018-05-04 14:41:19,280 modules.py:1139 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python load quantumespresso/6.1' ran fine
== 2018-05-04 14:41:19,281 modules.py:708 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/cvmfs/soft.computecanada.ca/nix/lib'] to ['/cvmfs/soft.computecanada.ca/nix/lib']
== 2018-05-04 14:41:19,281 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/nix/lib (previous value: '/cvmfs/soft.computecanada.ca/nix/lib')
== 2018-05-04 14:41:19,281 modules.py:708 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-05-04 14:41:19,281 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-05-04 14:41:19,282 modules.py:487 DEBUG checking whether hidden module iomkl/.2016.4.11 exists via 'show'...
== 2018-05-04 14:41:19,282 modules.py:654 DEBUG Current MODULEPATH: /home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2018-05-04 14:41:19,282 modules.py:661 DEBUG Changing LD_LIBRARY_PATH from '/cvmfs/soft.computecanada.ca/nix/lib' to '/cvmfs/soft.computecanada.ca/nix/lib' in environment for module command
== 2018-05-04 14:41:19,282 modules.py:661 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-05-04 14:41:19,282 modules.py:665 DEBUG Running module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python show iomkl/.2016.4.11' from /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811
== 2018-05-04 14:41:19,877 modules.py:671 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/lmod/lmod/libexec/lmod python show iomkl/.2016.4.11': stdout: os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXtbImNvbXBpbGVyIl09ImludGVsIixbImZmdHciXT0iZmZ0dy1tcGkiLFsiaGRmNSJdPSJoZGY1IixbIm1waSJdPSJvcGVubXBpIixbIm5ldGNkZiJdPSJuZXRjZGYiLH0sbVQ9e2VpZ2VuPXtbImZuIl09Ii9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAxNy9Db3JlL2VpZ2VuLzMuMy4yLmx1YSIsWyJmdWxsTmFtZSJdPSJlaWdlbi8zLjMuMiIsWyJsb2FkT3JkZXIiXT05LHByb3BUPXt0eXBlXz17WyJtYXRoIl09MSx9LH0sWyJzdGFja0RlcHRoIl09MCxbInN0YXR1cyJd";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "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";
os.environ["_ModuleTable010_"] = "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";
os.environ["_ModuleTable011_"] = "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";
os.environ["_ModuleTable012_"] = "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";
os.environ["_ModuleTable013_"] = "bWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2N1c3RvbS9tb2R1bGVzIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsfQ==";
os.environ["_ModuleTable_Sz_"] = "13";
; stderr: --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
   /cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.


More information
================
 - Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
]])
whatis("Description: Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.")
whatis("Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/")
conflict("iomkl")
load("icc/.2016.4.258")
load("ifort/.2016.4.258")
load("intel/2016.4")
load("openmpi/2.1.1")
load("imkl/11.3.4.258")
setenv("EBROOTIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11")
setenv("EBVERSIONIOMKL","2016.4.11")
setenv("EBDEVELIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11/easybuild/Core-iomkl-.2016.4.11-easybuild-devel")


== 2018-05-04 14:41:19,877 modules.py:559 DEBUG Cached result for 'module show iomkl/.2016.4.11' with key '('MODULEPATH=/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules', 'lmod', 'iomkl/.2016.4.11')': os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "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";
os.environ["_ModuleTable010_"] = "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";
os.environ["_ModuleTable011_"] = "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";
os.environ["_ModuleTable012_"] = "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";
os.environ["_ModuleTable013_"] = "bWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2N1c3RvbS9tb2R1bGVzIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsfQ==";
os.environ["_ModuleTable_Sz_"] = "13";
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
   /cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.


More information
================
 - Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
]])
whatis("Description: Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.")
whatis("Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/")
conflict("iomkl")
load("icc/.2016.4.258")
load("ifort/.2016.4.258")
load("intel/2016.4")
load("openmpi/2.1.1")
load("imkl/11.3.4.258")
setenv("EBROOTIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11")
setenv("EBVERSIONIOMKL","2016.4.11")
setenv("EBDEVELIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11/easybuild/Core-iomkl-.2016.4.11-easybuild-devel")


== 2018-05-04 14:41:19,878 modules.py:555 DEBUG Found cached result for 'module show iomkl/.2016.4.11' with key '('MODULEPATH=/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules', 'lmod', 'iomkl/.2016.4.11')': os.environ["MODULEPATH"] = "/home/mboisson/modulefiles:/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/MPI/intel2016.4/openmpi2.1:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/avx2/Compiler/intel2016.4:/home/mboisson/.local/easybuild/modules/2017/Core:/home/mboisson/.local/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017:/cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "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";
os.environ["_ModuleTable005_"] = "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";
os.environ["_ModuleTable006_"] = "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";
os.environ["_ModuleTable007_"] = "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";
os.environ["_ModuleTable008_"] = "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";
os.environ["_ModuleTable009_"] = "dWxlcy8yMDE3L2F2eDIvQ29tcGlsZXIvaW50ZWwyMDE2LjQvb3Blbm1waS8yLjEuMS5sdWEiLFsiZnVsbE5hbWUiXT0ib3Blbm1waS8yLjEuMSIsWyJsb2FkT3JkZXIiXT02LHByb3BUPXt0eXBlXz17WyJtcGkiXT0xLH0sfSxbInN0YWNrRGVwdGgiXT0xLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJvcGVubXBpLzIuMS4xIix9LHB5dGhvbj17WyJmbiJdPSIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZS9weXRob24vMi43LjE0Lmx1YSIsWyJmdWxsTmFtZSJdPSJweXRob24vMi43LjE0IixbImxvYWRPcmRlciJdPTgscHJvcFQ9e3R5cGVfPXtbInRvb2xzIl09MSx9LH0sWyJzdGFja0RlcHRoIl09MCxbInN0";
os.environ["_ModuleTable010_"] = "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";
os.environ["_ModuleTable011_"] = "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";
os.environ["_ModuleTable012_"] = "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";
os.environ["_ModuleTable013_"] = "bWJvaXNzb24vLmxvY2FsL2Vhc3lidWlsZC9tb2R1bGVzLzIwMTcvQ29yZSIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3IiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9lYXN5YnVpbGQvbW9kdWxlcy8yMDE3L0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2N1c3RvbS9tb2R1bGVzIix9LFsic3lzdGVtQmFzZU1QQVRIIl09IiIsfQ==";
os.environ["_ModuleTable_Sz_"] = "13";
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
   /cvmfs/soft.computecanada.ca/easybuild/modules/2017/Core/iomkl/.2016.4.11.lua:
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.


More information
================
 - Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/
]])
whatis("Description: Intel Cluster Toolchain Compiler Edition provides Intel C/C++ and Fortran compilers, Intel MKL & OpenMPI.")
whatis("Homepage: http://software.intel.com/en-us/intel-cluster-toolkit-compiler/")
conflict("iomkl")
load("icc/.2016.4.258")
load("ifort/.2016.4.258")
load("intel/2016.4")
load("openmpi/2.1.1")
load("imkl/11.3.4.258")
setenv("EBROOTIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11")
setenv("EBVERSIONIOMKL","2016.4.11")
setenv("EBDEVELIOMKL","/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/iomkl/2016.4.11/easybuild/Core-iomkl-.2016.4.11-easybuild-devel")


== 2018-05-04 14:41:19,878 toolchain.py:600 DEBUG List of toolchain dependencies from toolchain module: ['icc/.2016.4.258', 'ifort/.2016.4.258', 'intel/2016.4', 'openmpi/2.1.1', 'imkl/11.3.4.258']
== 2018-05-04 14:41:19,879 toolchain.py:418 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '2016.4.11', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'iomkl', 'full_mod_name': 'Core/iomkl/.2016.4.11', 'hidden': True, 'parsed': True, 'short_mod_name': 'iomkl/.2016.4.11'}: {'LAPACK': ['imkl'], 'SCALAPACK': ['imkl'], 'BLAS': ['imkl'], 'FFT': ['imkl'], 'BLACS': ['imkl'], 'MPI': ['OpenMPI'], 'COMPILER': ['icc', 'ifort']}
== 2018-05-04 14:41:19,879 toolchain.py:613 DEBUG List of toolchain elements from toolchain definition: set(['icc', 'imkl', 'ifort', 'OpenMPI'])
== 2018-05-04 14:41:19,879 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'icc/.2016.4.258' is a module name for software with name 'icc' via regex ^icc/\S+$: True
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'ifort/.2016.4.258' is a module name for software with name 'icc' via regex ^icc/\S+$: False
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'intel/2016.4' is a module name for software with name 'icc' via regex ^icc/\S+$: False
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'openmpi/2.1.1' is a module name for software with name 'icc' via regex ^icc/\S+$: False
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'imkl/11.3.4.258' is a module name for software with name 'icc' via regex ^icc/\S+$: False
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'icc/.2016.4.258' is a module name for software with name 'imkl' via regex ^imkl/\S+$: False
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'ifort/.2016.4.258' is a module name for software with name 'imkl' via regex ^imkl/\S+$: False
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'intel/2016.4' is a module name for software with name 'imkl' via regex ^imkl/\S+$: False
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'openmpi/2.1.1' is a module name for software with name 'imkl' via regex ^imkl/\S+$: False
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'imkl/11.3.4.258' is a module name for software with name 'imkl' via regex ^imkl/\S+$: True
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'icc/.2016.4.258' is a module name for software with name 'ifort' via regex ^ifort/\S+$: False
== 2018-05-04 14:41:19,880 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'ifort/.2016.4.258' is a module name for software with name 'ifort' via regex ^ifort/\S+$: True
== 2018-05-04 14:41:19,881 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'intel/2016.4' is a module name for software with name 'ifort' via regex ^ifort/\S+$: False
== 2018-05-04 14:41:19,881 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'openmpi/2.1.1' is a module name for software with name 'ifort' via regex ^ifort/\S+$: False
== 2018-05-04 14:41:19,881 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'imkl/11.3.4.258' is a module name for software with name 'ifort' via regex ^ifort/\S+$: False
== 2018-05-04 14:41:19,881 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'icc/.2016.4.258' is a module name for software with name 'OpenMPI' via regex ^openmpi/\S+$: False
== 2018-05-04 14:41:19,881 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'ifort/.2016.4.258' is a module name for software with name 'OpenMPI' via regex ^openmpi/\S+$: False
== 2018-05-04 14:41:19,881 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'intel/2016.4' is a module name for software with name 'OpenMPI' via regex ^openmpi/\S+$: False
== 2018-05-04 14:41:19,881 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'openmpi/2.1.1' is a module name for software with name 'OpenMPI' via regex ^openmpi/\S+$: True
== 2018-05-04 14:41:19,881 SoftCCHierarchicalMNS.py:80 DEBUG Checking whether 'imkl/11.3.4.258' is a module name for software with name 'OpenMPI' via regex ^openmpi/\S+$: False
== 2018-05-04 14:41:19,881 toolchain.py:616 INFO List of toolchain dependency modules and toolchain definition match!
== 2018-05-04 14:41:19,881 toolchain.py:289 DEBUG get_software_version software version 2016.4.258 for icc was found in environment
== 2018-05-04 14:41:19,882 toolchain.py:289 DEBUG get_software_version software version 2016.4.258 for ifort was found in environment
== 2018-05-04 14:41:19,883 options.py:90 WARNING option: option with name _opt_CC returns None
== 2018-05-04 14:41:19,883 options.py:90 WARNING option: option with name _opt_CXX returns None
== 2018-05-04 14:41:19,883 options.py:90 WARNING option: option with name _opt_F77 returns None
== 2018-05-04 14:41:19,883 options.py:90 WARNING option: option with name _opt_F90 returns None
== 2018-05-04 14:41:19,883 options.py:90 WARNING option: option with name _opt_FC returns None
== 2018-05-04 14:41:19,883 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258 for icc was found in environment
== 2018-05-04 14:41:19,883 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258 for ifort was found in environment
== 2018-05-04 14:41:19,883 toolchain.py:289 DEBUG get_software_version software version 2016.4.258 for icc was found in environment
== 2018-05-04 14:41:19,884 toolchain.py:289 DEBUG get_software_version software version 2016.4.258 for ifort was found in environment
== 2018-05-04 14:41:19,884 compiler.py:338 INFO _set_optimal_architecture: using xCore-AVX2 as optarch for x86_64.
== 2018-05-04 14:41:19,886 toolchain.py:289 DEBUG get_software_version software version 2.1.1 for OpenMPI was found in environment
== 2018-05-04 14:41:19,887 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1 for OpenMPI was found in environment
== 2018-05-04 14:41:19,888 toolchain.py:289 DEBUG get_software_version software version 11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,888 toolchain.py:289 DEBUG get_software_version software version 11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,889 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,889 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,890 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/include was not found
== 2018-05-04 14:41:19,890 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib64 was not found
== 2018-05-04 14:41:19,890 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/compiler/lib/intel64 was not found
== 2018-05-04 14:41:19,893 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,893 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/include was not found
== 2018-05-04 14:41:19,894 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib64 was not found
== 2018-05-04 14:41:19,894 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,895 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,895 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/include was not found
== 2018-05-04 14:41:19,895 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib64 was not found
== 2018-05-04 14:41:19,895 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/compiler/lib/intel64 was not found
== 2018-05-04 14:41:19,895 toolchain.py:289 DEBUG get_software_version software version 11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,897 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,898 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,898 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/include was not found
== 2018-05-04 14:41:19,898 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib64 was not found
== 2018-05-04 14:41:19,898 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/compiler/lib/intel64 was not found
== 2018-05-04 14:41:19,898 intelfftw.py:83 DEBUG fftw_libs ['fftw3xc_intel']
== 2018-05-04 14:41:19,899 intelfftw.py:85 DEBUG fftw_libs ['fftw3xc_intel', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core']
== 2018-05-04 14:41:19,899 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,900 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258 for imkl was found in environment
== 2018-05-04 14:41:19,900 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/include was not found
== 2018-05-04 14:41:19,900 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib64 was not found
== 2018-05-04 14:41:19,901 toolchain.py:692 DEBUG prepare: set additional variables onlymod=False
== 2018-05-04 14:41:19,901 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14 for Python was found in environment
== 2018-05-04 14:41:19,901 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18 for HDF5 was found in environment
== 2018-05-04 14:41:19,901 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2 for Eigen was found in environment
== 2018-05-04 14:41:19,901 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6 for Voro++ was found in environment
== 2018-05-04 14:41:19,901 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0 for VTK was found in environment
== 2018-05-04 14:41:19,902 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2 for KIM was found in environment
== 2018-05-04 14:41:19,902 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6 for FFTW was found in environment
== 2018-05-04 14:41:19,902 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1 for netCDF was found in environment
== 2018-05-04 14:41:19,902 toolchain.py:280 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1 for QuantumESPRESSO was found in environment
== 2018-05-04 14:41:19,902 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib64 was not found
== 2018-05-04 14:41:19,902 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib64 was not found
== 2018-05-04 14:41:19,902 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/lib64 was not found
== 2018-05-04 14:41:19,903 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/lib was not found
== 2018-05-04 14:41:19,903 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib64 was not found
== 2018-05-04 14:41:19,903 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/lib64 was not found
== 2018-05-04 14:41:19,903 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib64 was not found
== 2018-05-04 14:41:19,903 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib64 was not found
== 2018-05-04 14:41:19,904 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/lib was not found
== 2018-05-04 14:41:19,904 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/include was not found
== 2018-05-04 14:41:19,904 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/lib64 was not found
== 2018-05-04 14:41:19,904 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/lib was not found
== 2018-05-04 14:41:19,908 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLACS_INC_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include
== 2018-05-04 14:41:19,908 environment.py:97 INFO Environment variable BLACS_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,908 environment.py:97 INFO Environment variable EBVARBLACS_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,908 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLACS_LIB_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64
== 2018-05-04 14:41:19,908 environment.py:97 INFO Environment variable BLACS_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,909 environment.py:97 INFO Environment variable EBVARBLACS_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,909 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLACS_MT_STATIC_LIBS to libmkl_blacs_openmpi_lp64.a
== 2018-05-04 14:41:19,909 environment.py:97 INFO Environment variable BLACS_MT_STATIC_LIBS set to libmkl_blacs_openmpi_lp64.a (previously undefined)
== 2018-05-04 14:41:19,909 environment.py:97 INFO Environment variable EBVARBLACS_MT_STATIC_LIBS set to libmkl_blacs_openmpi_lp64.a (previously undefined)
== 2018-05-04 14:41:19,909 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLACS_STATIC_LIBS to libmkl_blacs_openmpi_lp64.a
== 2018-05-04 14:41:19,909 environment.py:97 INFO Environment variable BLACS_STATIC_LIBS set to libmkl_blacs_openmpi_lp64.a (previously undefined)
== 2018-05-04 14:41:19,909 environment.py:97 INFO Environment variable EBVARBLACS_STATIC_LIBS set to libmkl_blacs_openmpi_lp64.a (previously undefined)
== 2018-05-04 14:41:19,909 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include
== 2018-05-04 14:41:19,909 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,909 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,909 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include
== 2018-05-04 14:41:19,910 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,910 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,910 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64
== 2018-05-04 14:41:19,910 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,910 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,910 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a
== 2018-05-04 14:41:19,910 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined)
== 2018-05-04 14:41:19,910 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined)
== 2018-05-04 14:41:19,910 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a
== 2018-05-04 14:41:19,910 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,910 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,911 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64
== 2018-05-04 14:41:19,911 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,911 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,911 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a
== 2018-05-04 14:41:19,911 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined)
== 2018-05-04 14:41:19,911 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined)
== 2018-05-04 14:41:19,911 toolchain.py:901 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a
== 2018-05-04 14:41:19,911 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,911 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,911 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CC to icc
== 2018-05-04 14:41:19,911 environment.py:97 INFO Environment variable CC set to icc (previously undefined)
== 2018-05-04 14:41:19,912 environment.py:97 INFO Environment variable EBVARCC set to icc (previously undefined)
== 2018-05-04 14:41:19,912 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source
== 2018-05-04 14:41:19,912 environment.py:97 INFO Environment variable CFLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,912 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,912 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/include
== 2018-05-04 14:41:19,912 environment.py:97 INFO Environment variable CPPFLAGS set to -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/include (previously undefined)
== 2018-05-04 14:41:19,912 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/include (previously undefined)
== 2018-05-04 14:41:19,912 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CXX to icpc
== 2018-05-04 14:41:19,912 environment.py:97 INFO Environment variable CXX set to icpc (previously undefined)
== 2018-05-04 14:41:19,912 environment.py:97 INFO Environment variable EBVARCXX set to icpc (previously undefined)
== 2018-05-04 14:41:19,912 toolchain.py:901 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source
== 2018-05-04 14:41:19,913 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,913 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,913 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F77 to ifort
== 2018-05-04 14:41:19,913 environment.py:97 INFO Environment variable F77 set to ifort (previously undefined)
== 2018-05-04 14:41:19,913 environment.py:97 INFO Environment variable EBVARF77 set to ifort (previously undefined)
== 2018-05-04 14:41:19,913 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F90 to ifort
== 2018-05-04 14:41:19,913 environment.py:97 INFO Environment variable F90 set to ifort (previously undefined)
== 2018-05-04 14:41:19,913 environment.py:97 INFO Environment variable EBVARF90 set to ifort (previously undefined)
== 2018-05-04 14:41:19,913 toolchain.py:901 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source
== 2018-05-04 14:41:19,913 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,913 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,914 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FC to ifort
== 2018-05-04 14:41:19,914 environment.py:97 INFO Environment variable FC set to ifort (previously undefined)
== 2018-05-04 14:41:19,914 environment.py:97 INFO Environment variable EBVARFC set to ifort (previously undefined)
== 2018-05-04 14:41:19,914 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source
== 2018-05-04 14:41:19,914 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,914 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,914 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source
== 2018-05-04 14:41:19,914 environment.py:97 INFO Environment variable FFLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,914 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -xCore-AVX2 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,914 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw
== 2018-05-04 14:41:19,914 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw (previously undefined)
== 2018-05-04 14:41:19,915 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw (previously undefined)
== 2018-05-04 14:41:19,915 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64
== 2018-05-04 14:41:19,915 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,915 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,915 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a
== 2018-05-04 14:41:19,915 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,915 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,915 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to -mkl_intel_lp64 -mkl_sequential -mkl_core
== 2018-05-04 14:41:19,915 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -mkl_intel_lp64 -mkl_sequential -mkl_core (previously undefined)
== 2018-05-04 14:41:19,915 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -mkl_intel_lp64 -mkl_sequential -mkl_core (previously undefined)
== 2018-05-04 14:41:19,916 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw
== 2018-05-04 14:41:19,916 environment.py:97 INFO Environment variable FFT_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw (previously undefined)
== 2018-05-04 14:41:19,916 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include/fftw (previously undefined)
== 2018-05-04 14:41:19,916 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64
== 2018-05-04 14:41:19,916 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,916 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,916 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a
== 2018-05-04 14:41:19,916 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,916 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,916 toolchain.py:901 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a
== 2018-05-04 14:41:19,916 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,917 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,917 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include
== 2018-05-04 14:41:19,917 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,917 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,917 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64
== 2018-05-04 14:41:19,917 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,917 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,917 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a
== 2018-05-04 14:41:19,917 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined)
== 2018-05-04 14:41:19,917 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined)
== 2018-05-04 14:41:19,917 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a
== 2018-05-04 14:41:19,918 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,918 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,918 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/lib/intel64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/lib64
== 2018-05-04 14:41:19,918 environment.py:97 INFO Environment variable LDFLAGS set to -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/lib/intel64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/lib64 (previously undefined)
== 2018-05-04 14:41:19,918 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/lib/intel64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/lib64 (previously undefined)
== 2018-05-04 14:41:19,918 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLACS to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_openmpi_lp64 -Wl,--end-group -Wl,-Bdynamic
== 2018-05-04 14:41:19,918 environment.py:97 INFO Environment variable LIBBLACS set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_openmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,918 environment.py:97 INFO Environment variable EBVARLIBBLACS set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_openmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,918 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLACS_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_openmpi_lp64 -Wl,--end-group -Wl,-Bdynamic
== 2018-05-04 14:41:19,918 environment.py:97 INFO Environment variable LIBBLACS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_openmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,918 environment.py:97 INFO Environment variable EBVARLIBBLACS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_openmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,919 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic
== 2018-05-04 14:41:19,919 environment.py:97 INFO Environment variable LIBBLAS set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,919 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,919 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread
== 2018-05-04 14:41:19,919 environment.py:97 INFO Environment variable LIBBLAS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,919 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,919 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic
== 2018-05-04 14:41:19,919 environment.py:97 INFO Environment variable LIBFFT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,919 environment.py:97 INFO Environment variable EBVARLIBFFT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,919 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic
== 2018-05-04 14:41:19,920 environment.py:97 INFO Environment variable LIBFFT_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,920 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,920 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic
== 2018-05-04 14:41:19,920 environment.py:97 INFO Environment variable LIBLAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,920 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,920 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread
== 2018-05-04 14:41:19,920 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,920 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,920 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread
== 2018-05-04 14:41:19,920 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,920 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,921 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic
== 2018-05-04 14:41:19,921 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,921 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,921 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBS to -liomp5 -lpthread
== 2018-05-04 14:41:19,921 environment.py:97 INFO Environment variable LIBS set to -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,921 environment.py:97 INFO Environment variable EBVARLIBS set to -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,921 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic
== 2018-05-04 14:41:19,921 environment.py:97 INFO Environment variable LIBSCALAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,921 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,921 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread
== 2018-05-04 14:41:19,922 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,922 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_openmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,922 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread
== 2018-05-04 14:41:19,922 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,922 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined)
== 2018-05-04 14:41:19,922 toolchain.py:901 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic
== 2018-05-04 14:41:19,922 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,922 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined)
== 2018-05-04 14:41:19,922 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICC to mpicc
== 2018-05-04 14:41:19,922 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
== 2018-05-04 14:41:19,922 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
== 2018-05-04 14:41:19,923 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx
== 2018-05-04 14:41:19,923 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
== 2018-05-04 14:41:19,923 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
== 2018-05-04 14:41:19,923 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort
== 2018-05-04 14:41:19,923 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
== 2018-05-04 14:41:19,923 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
== 2018-05-04 14:41:19,923 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort
== 2018-05-04 14:41:19,923 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
== 2018-05-04 14:41:19,923 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
== 2018-05-04 14:41:19,923 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort
== 2018-05-04 14:41:19,923 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
== 2018-05-04 14:41:19,924 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
== 2018-05-04 14:41:19,924 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include
== 2018-05-04 14:41:19,924 environment.py:97 INFO Environment variable MPI_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include (previously undefined)
== 2018-05-04 14:41:19,924 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/include (previously undefined)
== 2018-05-04 14:41:19,924 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib
== 2018-05-04 14:41:19,924 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib (previously undefined)
== 2018-05-04 14:41:19,924 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib (previously undefined)
== 2018-05-04 14:41:19,924 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib/libmpi.so
== 2018-05-04 14:41:19,924 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib/libmpi.so (previously undefined)
== 2018-05-04 14:41:19,924 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/lib/libmpi.so (previously undefined)
== 2018-05-04 14:41:19,925 toolchain.py:901 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to
== 2018-05-04 14:41:19,925 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to  (previously undefined)
== 2018-05-04 14:41:19,925 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to  (previously undefined)
== 2018-05-04 14:41:19,925 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CC to icc
== 2018-05-04 14:41:19,925 environment.py:97 INFO Environment variable OMPI_CC set to icc (previously undefined)
== 2018-05-04 14:41:19,925 environment.py:97 INFO Environment variable EBVAROMPI_CC set to icc (previously undefined)
== 2018-05-04 14:41:19,925 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_CXX to icpc
== 2018-05-04 14:41:19,925 environment.py:97 INFO Environment variable OMPI_CXX set to icpc (previously undefined)
== 2018-05-04 14:41:19,925 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to icpc (previously undefined)
== 2018-05-04 14:41:19,925 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F77 to ifort
== 2018-05-04 14:41:19,925 environment.py:97 INFO Environment variable OMPI_F77 set to ifort (previously undefined)
== 2018-05-04 14:41:19,926 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to ifort (previously undefined)
== 2018-05-04 14:41:19,926 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_F90 to ifort
== 2018-05-04 14:41:19,926 environment.py:97 INFO Environment variable OMPI_F90 set to ifort (previously undefined)
== 2018-05-04 14:41:19,926 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to ifort (previously undefined)
== 2018-05-04 14:41:19,926 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OMPI_FC to ifort
== 2018-05-04 14:41:19,926 environment.py:97 INFO Environment variable OMPI_FC set to ifort (previously undefined)
== 2018-05-04 14:41:19,926 environment.py:97 INFO Environment variable EBVAROMPI_FC set to ifort (previously undefined)
== 2018-05-04 14:41:19,926 toolchain.py:901 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -xCore-AVX2
== 2018-05-04 14:41:19,926 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -xCore-AVX2 (previously undefined)
== 2018-05-04 14:41:19,926 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -xCore-AVX2 (previously undefined)
== 2018-05-04 14:41:19,926 toolchain.py:901 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -ftz -fp-speculation=safe -fp-model source
== 2018-05-04 14:41:19,927 environment.py:97 INFO Environment variable PRECFLAGS set to -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,927 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2018-05-04 14:41:19,927 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include
== 2018-05-04 14:41:19,927 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,927 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include (previously undefined)
== 2018-05-04 14:41:19,927 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64
== 2018-05-04 14:41:19,927 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,927 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/lib/intel64 (previously undefined)
== 2018-05-04 14:41:19,927 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libmkl_scalapack_lp64.a,libmkl_blacs_openmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a
== 2018-05-04 14:41:19,927 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_openmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined)
== 2018-05-04 14:41:19,928 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_openmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined)
== 2018-05-04 14:41:19,928 toolchain.py:901 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libmkl_scalapack_lp64.a,libmkl_blacs_openmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a
== 2018-05-04 14:41:19,928 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_openmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,928 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_openmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined)
== 2018-05-04 14:41:19,928 toolchain.py:743 DEBUG Using compiler cache tool 'ccache' for compilers: ['icc', 'icpc', 'ifort', 'ifort', 'ifort']
== 2018-05-04 14:41:19,928 environment.py:97 INFO Environment variable CCACHE_DIR set to /cvmfs/local/ccache (previously undefined)
== 2018-05-04 14:41:19,928 environment.py:97 INFO Environment variable CCACHE_TEMPDIR set to /tmp/eb-oNdpYJ/tmpxxrwzK (previously undefined)
== 2018-05-04 14:41:19,929 filetools.py:343 INFO Command ccache found at /cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin/ccache
== 2018-05-04 14:41:19,929 environment.py:97 INFO Environment variable PATH set to /tmp/eb-oNdpYJ/tmpWUvw1s:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/WANT/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/upftools:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin (previous value: '/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/WANT/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/upftools:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/netcdf/4.4.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/hdf5/1.8.18/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/openmpi/2.1.1/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/ifort/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/icc/2016.4.258/compilers_and_libraries_2016.4.258/linux/bin/intel64:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-5.4.0/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/sbin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/easybuild/bin')
== 2018-05-04 14:41:19,929 filetools.py:343 INFO Command icc found at /tmp/eb-oNdpYJ/tmpWUvw1s/icc
== 2018-05-04 14:41:19,929 toolchain.py:643 DEBUG which(icc): /tmp/eb-oNdpYJ/tmpWUvw1s/icc -> /cvmfs/soft.computecanada.ca/nix/store/3818hjqg12jra6nkxmc5n9c9lvxv65xi-ccache-3.2.5/bin/ccache
== 2018-05-04 14:41:19,929 filetools.py:343 INFO Command icpc found at /tmp/eb-oNdpYJ/tmpWUvw1s/icpc
== 2018-05-04 14:41:19,930 toolchain.py:643 DEBUG which(icpc): /tmp/eb-oNdpYJ/tmpWUvw1s/icpc -> /cvmfs/soft.computecanada.ca/nix/store/3818hjqg12jra6nkxmc5n9c9lvxv65xi-ccache-3.2.5/bin/ccache
== 2018-05-04 14:41:19,930 filetools.py:343 INFO Command ifort found at /tmp/eb-oNdpYJ/tmpWUvw1s/ifort
== 2018-05-04 14:41:19,930 toolchain.py:643 DEBUG which(ifort): /tmp/eb-oNdpYJ/tmpWUvw1s/ifort -> /cvmfs/soft.computecanada.ca/nix/store/3818hjqg12jra6nkxmc5n9c9lvxv65xi-ccache-3.2.5/bin/ccache
== 2018-05-04 14:41:19,930 filetools.py:343 INFO Command ifort found at /tmp/eb-oNdpYJ/tmpWUvw1s/ifort
== 2018-05-04 14:41:19,930 toolchain.py:643 DEBUG which(ifort): /tmp/eb-oNdpYJ/tmpWUvw1s/ifort -> /cvmfs/soft.computecanada.ca/nix/store/3818hjqg12jra6nkxmc5n9c9lvxv65xi-ccache-3.2.5/bin/ccache
== 2018-05-04 14:41:19,930 filetools.py:343 INFO Command ifort found at /tmp/eb-oNdpYJ/tmpWUvw1s/ifort
== 2018-05-04 14:41:19,931 toolchain.py:643 DEBUG which(ifort): /tmp/eb-oNdpYJ/tmpWUvw1s/ifort -> /cvmfs/soft.computecanada.ca/nix/store/3818hjqg12jra6nkxmc5n9c9lvxv65xi-ccache-3.2.5/bin/ccache
== 2018-05-04 14:41:19,931 toolchain.py:645 INFO Commands symlinked to /cvmfs/soft.computecanada.ca/nix/var/nix/profiles/16.09/bin/ccache via /tmp/eb-oNdpYJ/tmpWUvw1s: icc, icpc, ifort, ifort, ifort
== 2018-05-04 14:41:19,931 toolchain.py:757 DEBUG Cached compilers (after preparing for ccache): set(['icc', 'ifort', 'icpc'])
== 2018-05-04 14:41:19,931 toolchain.py:289 DEBUG get_software_version software version 2.1.1 for OpenMPI was found in environment
== 2018-05-04 14:41:19,931 easyblock.py:1449 INFO Using /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/ as start dir
== 2018-05-04 14:41:19,931 easyblock.py:1452 DEBUG Changed to real build directory /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/ (start_dir)
== 2018-05-04 14:41:19,931 easyblock.py:2468 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2018-05-04 14:41:19,932 build_log.py:234 INFO configuring...
== 2018-05-04 14:41:19,932 easyblock.py:2476 INFO Starting configure step
== 2018-05-04 14:41:19,932 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:19,932 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:19,932 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:19,932 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:19,932 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:19,932 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:19,933 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:19,933 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:19,933 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:19,933 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:19,933 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:19,933 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:19,933 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:19,933 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:19,933 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:19,933 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:19,934 easyblock.py:2482 INFO Running method configure_step part of step configure
== 2018-05-04 14:41:19,934 pythonpackage.py:157 DEBUG Determining Python library directory using command 'python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))''
== 2018-05-04 14:41:19,934 run.py:173 DEBUG run_cmd: running cmd python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))' (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811)
== 2018-05-04 14:41:19,934 run.py:192 INFO running cmd: python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))'
== 2018-05-04 14:41:19,980 run.py:508 DEBUG cmd "python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))'" exited with exit code 0 and output:
/tmp/lib/python2.7/site-packages

== 2018-05-04 14:41:19,981 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:41:19,981 pythonpackage.py:168 DEBUG Determined pylibdir using 'python -c 'import distutils.sysconfig; print(distutils.sysconfig.get_python_lib(plat_specific=False, prefix="/tmp/"))'': lib/python2.7/site-packages
== 2018-05-04 14:41:19,981 easyblock.py:2468 DEBUG Not skipping build step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2018-05-04 14:41:19,981 build_log.py:234 INFO building...
== 2018-05-04 14:41:19,981 easyblock.py:2476 INFO Starting build step
== 2018-05-04 14:41:19,982 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:19,982 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:19,982 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:19,982 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:19,982 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:19,982 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:19,982 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:19,982 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:19,982 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2abfccc72290>
== 2018-05-04 14:41:19,982 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:19,983 templates.py:175 DEBUG version found in easyconfig is 20170811
== 2018-05-04 14:41:19,983 templates.py:219 DEBUG name: github_account, config: None
== 2018-05-04 14:41:19,983 templates.py:219 DEBUG name: name, config: LAMMPS
== 2018-05-04 14:41:19,983 templates.py:219 DEBUG name: version, config: 20170811
== 2018-05-04 14:41:19,983 templates.py:219 DEBUG name: versionsuffix, config: -omp
== 2018-05-04 14:41:19,983 templates.py:219 DEBUG name: versionprefix, config:
== 2018-05-04 14:41:19,983 easyblock.py:2482 INFO Running method build_step part of step build
== 2018-05-04 14:41:19,983 lammps.py:182 INFO Building qmmm package libraries in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/qmmm
== 2018-05-04 14:41:19,984 run.py:135 DEBUG run_cmd: Output of "make -f Makefile.ifort CC="icc" CXX="icpc" FC="ifort" F90="ifort" " will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-fuKLFY.log
== 2018-05-04 14:41:19,984 run.py:173 DEBUG run_cmd: running cmd make -f Makefile.ifort CC="icc" CXX="icpc" FC="ifort" F90="ifort"  (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/qmmm)
== 2018-05-04 14:41:19,984 run.py:192 INFO running cmd: make -f Makefile.ifort CC="icc" CXX="icpc" FC="ifort" F90="ifort"
== 2018-05-04 14:41:20,016 run.py:506 INFO cmd "make -f Makefile.ifort CC="icc" CXX="icpc" FC="ifort" F90="ifort" " exited with exit code 0 and output:
icpc -c  -DOMPI_SKIP_MPICXX=1 -O2 -Wall -g -fPIC -I../../src -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1//COUPLE/include -I/include64 libqmmm.c -o libqmmm.o
ar rv libqmmm.a libqmmm.o
ar: creating libqmmm.a
a - libqmmm.o

== 2018-05-04 14:41:20,017 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:41:20,017 lammps.py:182 INFO Building poems package libraries in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/poems
== 2018-05-04 14:41:20,017 run.py:135 DEBUG run_cmd: Output of "make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort" " will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-VzI48a.log
== 2018-05-04 14:41:20,017 run.py:173 DEBUG run_cmd: running cmd make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort"  (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/poems)
== 2018-05-04 14:41:20,017 run.py:192 INFO running cmd: make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort"
== 2018-05-04 14:41:20,254 run.py:506 INFO cmd "make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort" " exited with exit code 0 and output:
icc -O3 -g -fPIC -Wall  -c workspace.cpp
icc -O3 -g -fPIC -Wall  -c system.cpp
icc -O3 -g -fPIC -Wall  -c poemsobject.cpp
icc -O3 -g -fPIC -Wall  -c body.cpp
icc -O3 -g -fPIC -Wall  -c rigidbody.cpp
icc -O3 -g -fPIC -Wall  -c particle.cpp
icc -O3 -g -fPIC -Wall  -c inertialframe.cpp
icc -O3 -g -fPIC -Wall  -c joint.cpp
icc -O3 -g -fPIC -Wall  -c revolutejoint.cpp
icc -O3 -g -fPIC -Wall  -c prismaticjoint.cpp
icc -O3 -g -fPIC -Wall  -c sphericaljoint.cpp
icc -O3 -g -fPIC -Wall  -c freebodyjoint.cpp
icc -O3 -g -fPIC -Wall  -c body23joint.cpp
icc -O3 -g -fPIC -Wall  -c mixedjoint.cpp
icc -O3 -g -fPIC -Wall  -c point.cpp
icc -O3 -g -fPIC -Wall  -c fixedpoint.cpp
icc -O3 -g -fPIC -Wall  -c solver.cpp
icc -O3 -g -fPIC -Wall  -c onsolver.cpp
icc -O3 -g -fPIC -Wall  -c onfunctions.cpp
icc -O3 -g -fPIC -Wall  -c onbody.cpp
icc -O3 -g -fPIC -Wall  -c virtualmatrix.cpp
icc -O3 -g -fPIC -Wall  -c matrix.cpp
icc -O3 -g -fPIC -Wall  -c matrixfun.cpp
icc -O3 -g -fPIC -Wall  -c mat3x3.cpp
icc -O3 -g -fPIC -Wall  -c virtualcolmatrix.cpp
icc -O3 -g -fPIC -Wall  -c colmatrix.cpp
icc -O3 -g -fPIC -Wall  -c vect3.cpp
icc -O3 -g -fPIC -Wall  -c virtualrowmatrix.cpp
icc -O3 -g -fPIC -Wall  -c rowmatrix.cpp
icc -O3 -g -fPIC -Wall  -c mat6x6.cpp
icc -O3 -g -fPIC -Wall  -c vect6.cpp
icc -O3 -g -fPIC -Wall  -c fastmatrixops.cpp
icc -O3 -g -fPIC -Wall  -c colmatmap.cpp
icc -O3 -g -fPIC -Wall  -c eulerparameters.cpp
icc -O3 -g -fPIC -Wall  -c vect4.cpp
icc -O3 -g -fPIC -Wall  -c norm.cpp
icc -O3 -g -fPIC -Wall  -c mat4x4.cpp
icc -O3 -g -fPIC -Wall  -c poemstreenode.cpp
ar rv libpoems.a workspace.o system.o poemsobject.o body.o rigidbody.o particle.o inertialframe.o joint.o revolutejoint.o prismaticjoint.o sphericaljoint.o freebodyjoint.o body23joint.o mixedjoint.o point.o fixedpoint.o solver.o onsolver.o onfunctions.o onbody.o virtualmatrix.o matrix.o matrixfun.o mat3x3.o virtualcolmatrix.o colmatrix.o vect3.o virtualrowmatrix.o rowmatrix.o mat6x6.o vect6.o fastmatrixops.o colmatmap.o eulerparameters.o vect4.o norm.o mat4x4.o poemstreenode.o
ar: creating libpoems.a
a - workspace.o
a - system.o
a - poemsobject.o
a - body.o
a - rigidbody.o
a - particle.o
a - inertialframe.o
a - joint.o
a - revolutejoint.o
a - prismaticjoint.o
a - sphericaljoint.o
a - freebodyjoint.o
a - body23joint.o
a - mixedjoint.o
a - point.o
a - fixedpoint.o
a - solver.o
a - onsolver.o
a - onfunctions.o
a - onbody.o
a - virtualmatrix.o
a - matrix.o
a - matrixfun.o
a - mat3x3.o
a - virtualcolmatrix.o
a - colmatrix.o
a - vect3.o
a - virtualrowmatrix.o
a - rowmatrix.o
a - mat6x6.o
a - vect6.o
a - fastmatrixops.o
a - colmatmap.o
a - eulerparameters.o
a - vect4.o
a - norm.o
a - mat4x4.o
a - poemstreenode.o

== 2018-05-04 14:41:20,255 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:41:20,255 lammps.py:182 INFO Building reax package libraries in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/reax
== 2018-05-04 14:41:20,256 run.py:135 DEBUG run_cmd: Output of "make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort" " will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-LprZmi.log
== 2018-05-04 14:41:20,256 run.py:173 DEBUG run_cmd: running cmd make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort"  (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/reax)
== 2018-05-04 14:41:20,256 run.py:192 INFO running cmd: make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort"
== 2018-05-04 14:41:55,269 run.py:506 INFO cmd "make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort" " exited with exit code 0 and output:
ifort -O3 -fPIC -c reax_connect.F
ifort -O3 -fPIC -c reax_inout.F
ifort -O3 -fPIC -c reax_lammps.F
ifort -O3 -fPIC -c reax_poten.F
ifort -O3 -fPIC -c reax_reac.F
ifort -O3 -fPIC -c reax_charges.F
ar rv libreax.a reax_connect.o reax_inout.o reax_lammps.o reax_poten.o reax_reac.o reax_charges.o
ar: creating libreax.a
a - reax_connect.o
a - reax_inout.o
a - reax_lammps.o
a - reax_poten.o
a - reax_reac.o
a - reax_charges.o

== 2018-05-04 14:41:55,269 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:41:55,270 lammps.py:182 INFO Building atc package libraries in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/atc
== 2018-05-04 14:41:55,271 run.py:135 DEBUG run_cmd: Output of "make -f Makefile.icc CC="icc" CXX="icpc" FC="ifort" F90="ifort"  user-atc_SYSLIB="$LIBLAPACK_MT"" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-IG1z5G.log
== 2018-05-04 14:41:55,271 run.py:173 DEBUG run_cmd: running cmd make -f Makefile.icc CC="icc" CXX="icpc" FC="ifort" F90="ifort"  user-atc_SYSLIB="$LIBLAPACK_MT" (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/atc)
== 2018-05-04 14:41:55,271 run.py:192 INFO running cmd: make -f Makefile.icc CC="icc" CXX="icpc" FC="ifort" F90="ifort"  user-atc_SYSLIB="$LIBLAPACK_MT"
== 2018-05-04 14:41:57,207 run.py:506 INFO cmd "make -f Makefile.icc CC="icc" CXX="icpc" FC="ifort" F90="ifort"  user-atc_SYSLIB="$LIBLAPACK_MT"" exited with exit code 0 and output:
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c FieldEulerIntegrator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ElectronHeatFlux.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c Stress.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c Material.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ATC_Coupling.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ThermalTimeIntegrator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c LinearSolver.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ATC_CouplingMomentumEnergy.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c PerPairQuantity.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c CauchyBorn.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ATC_TransferKernel.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c TimeFilter.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c BodyForce.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c Vector.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationElectronContinuity.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ParSparseMatrix.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationElectronTemperature.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c KD_Tree.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c PerAtomQuantityLibrary.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c PrescribedDataManager.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c CBLattice.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ATC_CouplingEnergy.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c Quadrature.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c TransferOperator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationChargeDiffusion.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c SpeciesTimeIntegrator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationDiffusion.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c Kinetostat.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ATC_TransferPartitionOfUnity.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ElectronFlux.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ATC_Method.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c FE_Engine.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c FE_Element.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ViscousStress.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationPhononTemperature.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c TimeIntegrator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c PhysicsModel.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c FE_Mesh.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c MeshReader.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c PaqAtcUtility.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c CbPotential.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c FE_Interpolate.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ExtrinsicModelElectrostatic.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c InterscaleOperators.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ElectronHeatCapacity.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c SchrodingerSolver.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c Matrix.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ExtrinsicModel.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c PolynomialSolver.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ParDiagonalMatrix.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationPoisson.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c AtomToMoleculeTransfer.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c PoissonSolver.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationSchrodinger.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationMassDiffusion.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c Function.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c OutputManager.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ATC_Transfer.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ElectronDragPower.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c MPI_Wrappers.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ElasticTimeIntegrator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ExtrinsicModelDriftDiffusion.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ATC_CouplingMomentum.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c NonLinearSolver.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c TransferLibrary.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c FieldManager.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ElectronPhononExchange.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c FundamentalAtomicQuantity.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c LammpsInterface.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ImplicitSolveOperator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ATC_CouplingMass.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c KinetoThermostat.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ExtrinsicModelTwoTemperature.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c AtomicRegulator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ElectronChargeDensity.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c Thermostat.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationElectronMomentum.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c KernelFunction.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c GhostManager.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ChargeRegulator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c ConcentrationRegulator.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c WeakEquationMomentum.cpp
icc -O -g -fPIC -I../../src -DMPICH_IGNORE_CXX_SEEK -c MoleculeSet.cpp
ar rv libatc.a FieldEulerIntegrator.o ElectronHeatFlux.o Stress.o Material.o ATC_Coupling.o ThermalTimeIntegrator.o LinearSolver.o ATC_CouplingMomentumEnergy.o PerPairQuantity.o CauchyBorn.o ATC_TransferKernel.o TimeFilter.o BodyForce.o Vector.o WeakEquationElectronContinuity.o ParSparseMatrix.o WeakEquationElectronTemperature.o KD_Tree.o PerAtomQuantityLibrary.o PrescribedDataManager.o CBLattice.o ATC_CouplingEnergy.o Quadrature.o TransferOperator.o WeakEquationChargeDiffusion.o SpeciesTimeIntegrator.o WeakEquationDiffusion.o Kinetostat.o ATC_TransferPartitionOfUnity.o ElectronFlux.o ATC_Method.o FE_Engine.o FE_Element.o ViscousStress.o WeakEquationPhononTemperature.o TimeIntegrator.o PhysicsModel.o FE_Mesh.o MeshReader.o PaqAtcUtility.o CbPotential.o FE_Interpolate.o ExtrinsicModelElectrostatic.o InterscaleOperators.o ElectronHeatCapacity.o SchrodingerSolver.o Matrix.o ExtrinsicModel.o PolynomialSolver.o ParDiagonalMatrix.o WeakEquationPoisson.o AtomToMoleculeTransfer.o PoissonSolver.o WeakEquationSchrodinger.o WeakEquationMassDiffusion.o Function.o OutputManager.o ATC_Transfer.o ElectronDragPower.o MPI_Wrappers.o ElasticTimeIntegrator.o ExtrinsicModelDriftDiffusion.o ATC_CouplingMomentum.o NonLinearSolver.o TransferLibrary.o FieldManager.o ElectronPhononExchange.o FundamentalAtomicQuantity.o LammpsInterface.o ImplicitSolveOperator.o ATC_CouplingMass.o KinetoThermostat.o ExtrinsicModelTwoTemperature.o AtomicRegulator.o ElectronChargeDensity.o Thermostat.o WeakEquationElectronMomentum.o KernelFunction.o GhostManager.o ChargeRegulator.o ConcentrationRegulator.o WeakEquationMomentum.o MoleculeSet.o
ar: creating libatc.a
a - FieldEulerIntegrator.o
a - ElectronHeatFlux.o
a - Stress.o
a - Material.o
a - ATC_Coupling.o
a - ThermalTimeIntegrator.o
a - LinearSolver.o
a - ATC_CouplingMomentumEnergy.o
a - PerPairQuantity.o
a - CauchyBorn.o
a - ATC_TransferKernel.o
a - TimeFilter.o
a - BodyForce.o
a - Vector.o
a - WeakEquationElectronContinuity.o
a - ParSparseMatrix.o
a - WeakEquationElectronTemperature.o
a - KD_Tree.o
a - PerAtomQuantityLibrary.o
a - PrescribedDataManager.o
a - CBLattice.o
a - ATC_CouplingEnergy.o
a - Quadrature.o
a - TransferOperator.o
a - WeakEquationChargeDiffusion.o
a - SpeciesTimeIntegrator.o
a - WeakEquationDiffusion.o
a - Kinetostat.o
a - ATC_TransferPartitionOfUnity.o
a - ElectronFlux.o
a - ATC_Method.o
a - FE_Engine.o
a - FE_Element.o
a - ViscousStress.o
a - WeakEquationPhononTemperature.o
a - TimeIntegrator.o
a - PhysicsModel.o
a - FE_Mesh.o
a - MeshReader.o
a - PaqAtcUtility.o
a - CbPotential.o
a - FE_Interpolate.o
a - ExtrinsicModelElectrostatic.o
a - InterscaleOperators.o
a - ElectronHeatCapacity.o
a - SchrodingerSolver.o
a - Matrix.o
a - ExtrinsicModel.o
a - PolynomialSolver.o
a - ParDiagonalMatrix.o
a - WeakEquationPoisson.o
a - AtomToMoleculeTransfer.o
a - PoissonSolver.o
a - WeakEquationSchrodinger.o
a - WeakEquationMassDiffusion.o
a - Function.o
a - OutputManager.o
a - ATC_Transfer.o
a - ElectronDragPower.o
a - MPI_Wrappers.o
a - ElasticTimeIntegrator.o
a - ExtrinsicModelDriftDiffusion.o
a - ATC_CouplingMomentum.o
a - NonLinearSolver.o
a - TransferLibrary.o
a - FieldManager.o
a - ElectronPhononExchange.o
a - FundamentalAtomicQuantity.o
a - LammpsInterface.o
a - ImplicitSolveOperator.o
a - ATC_CouplingMass.o
a - KinetoThermostat.o
a - ExtrinsicModelTwoTemperature.o
a - AtomicRegulator.o
a - ElectronChargeDensity.o
a - Thermostat.o
a - WeakEquationElectronMomentum.o
a - KernelFunction.o
a - GhostManager.o
a - ChargeRegulator.o
a - ConcentrationRegulator.o
a - WeakEquationMomentum.o
a - MoleculeSet.o

== 2018-05-04 14:41:57,207 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:41:57,208 lammps.py:182 INFO Building meam package libraries in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/meam
== 2018-05-04 14:41:57,208 run.py:135 DEBUG run_cmd: Output of "make -f Makefile.ifort CC="icc" CXX="icpc" FC="ifort" F90="ifort"  meam_SYSLIB="-lifcore -lsvml -liomp5 -limf"" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-B_XDLQ.log
== 2018-05-04 14:41:57,208 run.py:173 DEBUG run_cmd: running cmd make -f Makefile.ifort CC="icc" CXX="icpc" FC="ifort" F90="ifort"  meam_SYSLIB="-lifcore -lsvml -liomp5 -limf" (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/meam)
== 2018-05-04 14:41:57,208 run.py:192 INFO running cmd: make -f Makefile.ifort CC="icc" CXX="icpc" FC="ifort" F90="ifort"  meam_SYSLIB="-lifcore -lsvml -liomp5 -limf"
== 2018-05-04 14:42:32,145 run.py:506 INFO cmd "make -f Makefile.ifort CC="icc" CXX="icpc" FC="ifort" F90="ifort"  meam_SYSLIB="-lifcore -lsvml -liomp5 -limf"" exited with exit code 0 and output:
ifort -O -fPIC -c meam_data.F
ifort -O -fPIC -c meam_setup_done.F
ifort -O -fPIC -c meam_setup_global.F
ifort -O -fPIC -c meam_setup_param.F
ifort -O -fPIC -c meam_dens_init.F
ifort -O -fPIC -c meam_dens_final.F
ifort -O -fPIC -c meam_force.F
ifort -O -fPIC -c meam_cleanup.F
icc -O -fPIC -c fm_exp.c
ar rv libmeam.a meam_data.o meam_setup_done.o meam_setup_global.o meam_setup_param.o meam_dens_init.o meam_dens_final.o meam_force.o meam_cleanup.o fm_exp.o
ar: creating libmeam.a
a - meam_data.o
a - meam_setup_done.o
a - meam_setup_global.o
a - meam_setup_param.o
a - meam_dens_init.o
a - meam_dens_final.o
a - meam_force.o
a - meam_cleanup.o
a - fm_exp.o

== 2018-05-04 14:42:32,147 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:32,147 lammps.py:182 INFO Building awpmd package libraries in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/awpmd
== 2018-05-04 14:42:32,148 run.py:135 DEBUG run_cmd: Output of "make -f Makefile.mpicc CC="icc" CXX="icpc" FC="ifort" F90="ifort"  user-awpmd_SYSLIB="$LIBLAPACK_MT"" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-0cXJgM.log
== 2018-05-04 14:42:32,148 run.py:173 DEBUG run_cmd: running cmd make -f Makefile.mpicc CC="icc" CXX="icpc" FC="ifort" F90="ifort"  user-awpmd_SYSLIB="$LIBLAPACK_MT" (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/awpmd)
== 2018-05-04 14:42:32,148 run.py:192 INFO running cmd: make -f Makefile.mpicc CC="icc" CXX="icpc" FC="ifort" F90="ifort"  user-awpmd_SYSLIB="$LIBLAPACK_MT"
== 2018-05-04 14:42:32,214 run.py:506 INFO cmd "make -f Makefile.mpicc CC="icc" CXX="icpc" FC="ifort" F90="ifort"  user-awpmd_SYSLIB="$LIBLAPACK_MT"" exited with exit code 0 and output:
icc -O3 -fPIC -Isystems/interact/TCP/ -Isystems/interact -Iivutils/include -DMPICH_IGNORE_CXX_SEEK -DOMPI_SKIP_MPICXX=1 -c ivutils/src/logexc.cpp -o ivutils/src/logexc.o
icc -O3 -fPIC -Isystems/interact/TCP/ -Isystems/interact -Iivutils/include -DMPICH_IGNORE_CXX_SEEK -DOMPI_SKIP_MPICXX=1 -c systems/interact/TCP/wpmd.cpp -o systems/interact/TCP/wpmd.o
icc -O3 -fPIC -Isystems/interact/TCP/ -Isystems/interact -Iivutils/include -DMPICH_IGNORE_CXX_SEEK -DOMPI_SKIP_MPICXX=1 -c systems/interact/TCP/wpmd_split.cpp -o systems/interact/TCP/wpmd_split.o
ar rv libawpmd.a ivutils/src/logexc.o systems/interact/TCP/wpmd.o systems/interact/TCP/wpmd_split.o
ar: creating libawpmd.a
a - ivutils/src/logexc.o
a - systems/interact/TCP/wpmd.o
a - systems/interact/TCP/wpmd_split.o

== 2018-05-04 14:42:32,214 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:32,214 lammps.py:182 INFO Building colvars package libraries in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/colvars
== 2018-05-04 14:42:32,215 run.py:135 DEBUG run_cmd: Output of "make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort" " will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-fiOJ0P.log
== 2018-05-04 14:42:32,215 run.py:173 DEBUG run_cmd: running cmd make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort"  (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/colvars)
== 2018-05-04 14:42:32,215 run.py:192 INFO running cmd: make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort"
== 2018-05-04 14:42:32,650 run.py:506 INFO cmd "make -f Makefile.mpi CC="icc" CXX="icpc" FC="ifort" F90="ifort" " exited with exit code 0 and output:
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvaratoms.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarbias_abf.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarbias_alb.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarbias.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarbias_histogram.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarbias_meta.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarbias_restraint.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarcomp_angles.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarcomp_coordnums.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarcomp.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarcomp_distances.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarcomp_protein.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarcomp_rotations.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvar.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvardeps.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvargrid.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarmodule.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarparse.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarproxy.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarscript.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvartypes.cpp
icpc -O2 -g -Wall -fPIC -funroll-loops   -c colvarvalue.cpp
ar -rscv libcolvars.a colvaratoms.o colvarbias_abf.o colvarbias_alb.o colvarbias.o colvarbias_histogram.o colvarbias_meta.o colvarbias_restraint.o colvarcomp_angles.o colvarcomp_coordnums.o colvarcomp.o colvarcomp_distances.o colvarcomp_protein.o colvarcomp_rotations.o colvar.o colvardeps.o colvargrid.o colvarmodule.o colvarparse.o colvarproxy.o colvarscript.o colvartypes.o colvarvalue.o
a - colvaratoms.o
a - colvarbias_abf.o
a - colvarbias_alb.o
a - colvarbias.o
a - colvarbias_histogram.o
a - colvarbias_meta.o
a - colvarbias_restraint.o
a - colvarcomp_angles.o
a - colvarcomp_coordnums.o
a - colvarcomp.o
a - colvarcomp_distances.o
a - colvarcomp_protein.o
a - colvarcomp_rotations.o
a - colvar.o
a - colvardeps.o
a - colvargrid.o
a - colvarmodule.o
a - colvarparse.o
a - colvarproxy.o
a - colvarscript.o
a - colvartypes.o
a - colvarvalue.o
cp Makefile.lammps.empty Makefile.lammps

== 2018-05-04 14:42:32,650 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:32,650 lammps.py:182 INFO Building h5md package libraries in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/h5md
== 2018-05-04 14:42:32,651 run.py:135 DEBUG run_cmd: Output of "make -f Makefile.h5cc CC="icc" CXX="icpc" FC="ifort" F90="ifort" " will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-tGT9do.log
== 2018-05-04 14:42:32,651 run.py:173 DEBUG run_cmd: running cmd make -f Makefile.h5cc CC="icc" CXX="icpc" FC="ifort" F90="ifort"  (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/lib/h5md)
== 2018-05-04 14:42:32,651 run.py:192 INFO running cmd: make -f Makefile.h5cc CC="icc" CXX="icpc" FC="ifort" F90="ifort"
== 2018-05-04 14:42:32,692 run.py:506 INFO cmd "make -f Makefile.h5cc CC="icc" CXX="icpc" FC="ifort" F90="ifort" " exited with exit code 0 and output:
mkdir -p build
icc -I include -D_DEFAULT_SOURCE -O2 -DH5_NO_DEPRECATED_SYMBOLS  -Wall -fPIC -c src/ch5md.c -o build/ch5md.o
ar rc libh5md.a build/ch5md.o
ar rc libch5md.a build/ch5md.o
cp Makefile.lammps.empty Makefile.lammps

== 2018-05-04 14:42:32,692 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:32,692 lammps.py:220 INFO Building ASPHERE package
== 2018-05-04 14:42:32,693 run.py:135 DEBUG run_cmd: Output of "make yes-ASPHERE" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-7MnVmt.log
== 2018-05-04 14:42:32,693 run.py:173 DEBUG run_cmd: running cmd make yes-ASPHERE (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:32,693 run.py:192 INFO running cmd: make yes-ASPHERE
== 2018-05-04 14:42:33,184 run.py:506 INFO cmd "make yes-ASPHERE" exited with exit code 0 and output:
Installing package ASPHERE

== 2018-05-04 14:42:33,185 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:33,185 lammps.py:220 INFO Building BODY package
== 2018-05-04 14:42:33,185 run.py:135 DEBUG run_cmd: Output of "make yes-BODY" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-AthIg9.log
== 2018-05-04 14:42:33,185 run.py:173 DEBUG run_cmd: running cmd make yes-BODY (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:33,186 run.py:192 INFO running cmd: make yes-BODY
== 2018-05-04 14:42:33,333 run.py:506 INFO cmd "make yes-BODY" exited with exit code 0 and output:
Installing package BODY

== 2018-05-04 14:42:33,333 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:33,333 lammps.py:220 INFO Building CLASS2 package
== 2018-05-04 14:42:33,333 run.py:135 DEBUG run_cmd: Output of "make yes-CLASS2" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-QJtbyS.log
== 2018-05-04 14:42:33,334 run.py:173 DEBUG run_cmd: running cmd make yes-CLASS2 (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:33,334 run.py:192 INFO running cmd: make yes-CLASS2
== 2018-05-04 14:42:33,876 run.py:506 INFO cmd "make yes-CLASS2" exited with exit code 0 and output:
Installing package CLASS2

== 2018-05-04 14:42:33,876 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:33,876 lammps.py:220 INFO Building COLLOID package
== 2018-05-04 14:42:33,877 run.py:135 DEBUG run_cmd: Output of "make yes-COLLOID" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-elle6t.log
== 2018-05-04 14:42:33,877 run.py:173 DEBUG run_cmd: running cmd make yes-COLLOID (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:33,877 run.py:192 INFO running cmd: make yes-COLLOID
== 2018-05-04 14:42:34,247 run.py:506 INFO cmd "make yes-COLLOID" exited with exit code 0 and output:
Installing package COLLOID

== 2018-05-04 14:42:34,247 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:34,248 lammps.py:220 INFO Building COMPRESS package
== 2018-05-04 14:42:34,248 run.py:135 DEBUG run_cmd: Output of "make yes-COMPRESS" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-HrN1L1.log
== 2018-05-04 14:42:34,248 run.py:173 DEBUG run_cmd: running cmd make yes-COMPRESS (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:34,248 run.py:192 INFO running cmd: make yes-COMPRESS
== 2018-05-04 14:42:34,358 run.py:506 INFO cmd "make yes-COMPRESS" exited with exit code 0 and output:
Installing package COMPRESS

== 2018-05-04 14:42:34,359 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:34,359 lammps.py:220 INFO Building CORESHELL package
== 2018-05-04 14:42:34,359 run.py:135 DEBUG run_cmd: Output of "make yes-CORESHELL" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-Ot2ewh.log
== 2018-05-04 14:42:34,360 run.py:173 DEBUG run_cmd: running cmd make yes-CORESHELL (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:34,360 run.py:192 INFO running cmd: make yes-CORESHELL
== 2018-05-04 14:42:34,478 run.py:506 INFO cmd "make yes-CORESHELL" exited with exit code 0 and output:
Installing package CORESHELL

== 2018-05-04 14:42:34,478 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:34,478 lammps.py:220 INFO Building DIPOLE package
== 2018-05-04 14:42:34,478 run.py:135 DEBUG run_cmd: Output of "make yes-DIPOLE" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-5PPsFZ.log
== 2018-05-04 14:42:34,479 run.py:173 DEBUG run_cmd: running cmd make yes-DIPOLE (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:34,479 run.py:192 INFO running cmd: make yes-DIPOLE
== 2018-05-04 14:42:34,840 run.py:506 INFO cmd "make yes-DIPOLE" exited with exit code 0 and output:
Installing package DIPOLE

== 2018-05-04 14:42:34,840 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:34,840 lammps.py:220 INFO Building GRANULAR package
== 2018-05-04 14:42:34,841 run.py:135 DEBUG run_cmd: Output of "make yes-GRANULAR" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-lyUyno.log
== 2018-05-04 14:42:34,841 run.py:173 DEBUG run_cmd: running cmd make yes-GRANULAR (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:34,841 run.py:192 INFO running cmd: make yes-GRANULAR
== 2018-05-04 14:42:35,176 run.py:506 INFO cmd "make yes-GRANULAR" exited with exit code 0 and output:
Installing package GRANULAR

== 2018-05-04 14:42:35,177 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:35,177 lammps.py:220 INFO Building KIM package
== 2018-05-04 14:42:35,177 run.py:135 DEBUG run_cmd: Output of "make yes-KIM" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-rzTXBY.log
== 2018-05-04 14:42:35,177 run.py:173 DEBUG run_cmd: running cmd make yes-KIM (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:35,177 run.py:192 INFO running cmd: make yes-KIM
== 2018-05-04 14:42:35,283 run.py:506 INFO cmd "make yes-KIM" exited with exit code 0 and output:
Installing package KIM

== 2018-05-04 14:42:35,283 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:35,283 lammps.py:220 INFO Building KSPACE package
== 2018-05-04 14:42:35,284 run.py:135 DEBUG run_cmd: Output of "make yes-KSPACE" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-K1iUCk.log
== 2018-05-04 14:42:35,284 run.py:173 DEBUG run_cmd: running cmd make yes-KSPACE (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:35,284 run.py:192 INFO running cmd: make yes-KSPACE
== 2018-05-04 14:42:36,200 run.py:506 INFO cmd "make yes-KSPACE" exited with exit code 0 and output:
Installing package KSPACE
  updating package CORESHELL
  updating src/pair_born_coul_long_cs.cpp
  updating src/pair_buck_coul_long_cs.cpp
  updating src/pair_born_coul_long_cs.h
  updating src/pair_buck_coul_long_cs.h
  updating src/pair_coul_long_cs.cpp
  updating src/pair_coul_long_cs.h
  updating src/pair_lj_cut_coul_long_cs.cpp
  updating src/pair_lj_cut_coul_long_cs.h

== 2018-05-04 14:42:36,201 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:36,201 lammps.py:220 INFO Building MANYBODY package
== 2018-05-04 14:42:36,201 run.py:135 DEBUG run_cmd: Output of "make yes-MANYBODY" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-ZpV4a1.log
== 2018-05-04 14:42:36,202 run.py:173 DEBUG run_cmd: running cmd make yes-MANYBODY (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:36,202 run.py:192 INFO running cmd: make yes-MANYBODY
== 2018-05-04 14:42:37,012 run.py:506 INFO cmd "make yes-MANYBODY" exited with exit code 0 and output:
Installing package MANYBODY

== 2018-05-04 14:42:37,013 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:37,013 lammps.py:220 INFO Building MC package
== 2018-05-04 14:42:37,013 run.py:135 DEBUG run_cmd: Output of "make yes-MC" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-CsyRC9.log
== 2018-05-04 14:42:37,014 run.py:173 DEBUG run_cmd: running cmd make yes-MC (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:37,014 run.py:192 INFO running cmd: make yes-MC
== 2018-05-04 14:42:37,156 run.py:506 INFO cmd "make yes-MC" exited with exit code 0 and output:
Installing package MC

== 2018-05-04 14:42:37,158 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:37,158 lammps.py:220 INFO Building MEAM package
== 2018-05-04 14:42:37,158 run.py:135 DEBUG run_cmd: Output of "make yes-MEAM" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-TpWBU_.log
== 2018-05-04 14:42:37,159 run.py:173 DEBUG run_cmd: running cmd make yes-MEAM (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:37,159 run.py:192 INFO running cmd: make yes-MEAM
== 2018-05-04 14:42:37,257 run.py:506 INFO cmd "make yes-MEAM" exited with exit code 0 and output:
Installing package MEAM

== 2018-05-04 14:42:37,257 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:37,257 lammps.py:220 INFO Building MISC package
== 2018-05-04 14:42:37,258 run.py:135 DEBUG run_cmd: Output of "make yes-MISC" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-buj0YB.log
== 2018-05-04 14:42:37,258 run.py:173 DEBUG run_cmd: running cmd make yes-MISC (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:37,258 run.py:192 INFO running cmd: make yes-MISC
== 2018-05-04 14:42:37,481 run.py:506 INFO cmd "make yes-MISC" exited with exit code 0 and output:
Installing package MISC

== 2018-05-04 14:42:37,481 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:37,481 lammps.py:220 INFO Building MOLECULE package
== 2018-05-04 14:42:37,481 run.py:135 DEBUG run_cmd: Output of "make yes-MOLECULE" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-xQqfzv.log
== 2018-05-04 14:42:37,481 run.py:173 DEBUG run_cmd: running cmd make yes-MOLECULE (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:37,481 run.py:192 INFO running cmd: make yes-MOLECULE
== 2018-05-04 14:42:38,426 run.py:506 INFO cmd "make yes-MOLECULE" exited with exit code 0 and output:
Installing package MOLECULE

== 2018-05-04 14:42:38,427 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:38,427 lammps.py:220 INFO Building MPIIO package
== 2018-05-04 14:42:38,427 run.py:135 DEBUG run_cmd: Output of "make yes-MPIIO" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-RQTZW8.log
== 2018-05-04 14:42:38,428 run.py:173 DEBUG run_cmd: running cmd make yes-MPIIO (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:38,428 run.py:192 INFO running cmd: make yes-MPIIO
== 2018-05-04 14:42:38,568 run.py:506 INFO cmd "make yes-MPIIO" exited with exit code 0 and output:
Installing package MPIIO

== 2018-05-04 14:42:38,568 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:38,568 lammps.py:220 INFO Building OPT package
== 2018-05-04 14:42:38,569 run.py:135 DEBUG run_cmd: Output of "make yes-OPT" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-buJNW8.log
== 2018-05-04 14:42:38,569 run.py:173 DEBUG run_cmd: running cmd make yes-OPT (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:38,569 run.py:192 INFO running cmd: make yes-OPT
== 2018-05-04 14:42:38,718 run.py:506 INFO cmd "make yes-OPT" exited with exit code 0 and output:
Installing package OPT

== 2018-05-04 14:42:38,718 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:38,718 lammps.py:220 INFO Building POEMS package
== 2018-05-04 14:42:38,718 run.py:135 DEBUG run_cmd: Output of "make yes-POEMS" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-x8oSbZ.log
== 2018-05-04 14:42:38,719 run.py:173 DEBUG run_cmd: running cmd make yes-POEMS (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:38,719 run.py:192 INFO running cmd: make yes-POEMS
== 2018-05-04 14:42:38,810 run.py:506 INFO cmd "make yes-POEMS" exited with exit code 0 and output:
Installing package POEMS

== 2018-05-04 14:42:38,810 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:38,811 lammps.py:220 INFO Building PERI package
== 2018-05-04 14:42:38,811 run.py:135 DEBUG run_cmd: Output of "make yes-PERI" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-wZqnMA.log
== 2018-05-04 14:42:38,811 run.py:173 DEBUG run_cmd: running cmd make yes-PERI (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:38,811 run.py:192 INFO running cmd: make yes-PERI
== 2018-05-04 14:42:39,133 run.py:506 INFO cmd "make yes-PERI" exited with exit code 0 and output:
Installing package PERI

== 2018-05-04 14:42:39,133 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:39,134 lammps.py:220 INFO Building PYTHON package
== 2018-05-04 14:42:39,134 run.py:135 DEBUG run_cmd: Output of "make yes-PYTHON" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-tRgq80.log
== 2018-05-04 14:42:39,134 run.py:173 DEBUG run_cmd: running cmd make yes-PYTHON (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:39,134 run.py:192 INFO running cmd: make yes-PYTHON
== 2018-05-04 14:42:39,239 run.py:506 INFO cmd "make yes-PYTHON" exited with exit code 0 and output:
Installing package PYTHON

== 2018-05-04 14:42:39,240 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:39,240 lammps.py:220 INFO Building QEQ package
== 2018-05-04 14:42:39,240 run.py:135 DEBUG run_cmd: Output of "make yes-QEQ" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-czu2R1.log
== 2018-05-04 14:42:39,240 run.py:173 DEBUG run_cmd: running cmd make yes-QEQ (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:39,240 run.py:192 INFO running cmd: make yes-QEQ
== 2018-05-04 14:42:39,361 run.py:506 INFO cmd "make yes-QEQ" exited with exit code 0 and output:
Installing package QEQ

== 2018-05-04 14:42:39,362 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:39,362 lammps.py:220 INFO Building REAX package
== 2018-05-04 14:42:39,362 run.py:135 DEBUG run_cmd: Output of "make yes-REAX" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-bfGMKn.log
== 2018-05-04 14:42:39,362 run.py:173 DEBUG run_cmd: running cmd make yes-REAX (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:39,362 run.py:192 INFO running cmd: make yes-REAX
== 2018-05-04 14:42:39,479 run.py:506 INFO cmd "make yes-REAX" exited with exit code 0 and output:
Installing package REAX

== 2018-05-04 14:42:39,480 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:39,480 lammps.py:220 INFO Building REPLICA package
== 2018-05-04 14:42:39,480 run.py:135 DEBUG run_cmd: Output of "make yes-REPLICA" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-olLBJP.log
== 2018-05-04 14:42:39,480 run.py:173 DEBUG run_cmd: running cmd make yes-REPLICA (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:39,480 run.py:192 INFO running cmd: make yes-REPLICA
== 2018-05-04 14:42:39,647 run.py:506 INFO cmd "make yes-REPLICA" exited with exit code 0 and output:
Installing package REPLICA

== 2018-05-04 14:42:39,647 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:39,647 lammps.py:220 INFO Building RIGID package
== 2018-05-04 14:42:39,648 run.py:135 DEBUG run_cmd: Output of "make yes-RIGID" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-yW4BW4.log
== 2018-05-04 14:42:39,648 run.py:173 DEBUG run_cmd: running cmd make yes-RIGID (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:39,648 run.py:192 INFO running cmd: make yes-RIGID
== 2018-05-04 14:42:40,045 run.py:506 INFO cmd "make yes-RIGID" exited with exit code 0 and output:
Installing package RIGID

== 2018-05-04 14:42:40,045 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:40,045 lammps.py:220 INFO Building SHOCK package
== 2018-05-04 14:42:40,046 run.py:135 DEBUG run_cmd: Output of "make yes-SHOCK" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-dHyy0I.log
== 2018-05-04 14:42:40,046 run.py:173 DEBUG run_cmd: running cmd make yes-SHOCK (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:40,046 run.py:192 INFO running cmd: make yes-SHOCK
== 2018-05-04 14:42:40,158 run.py:506 INFO cmd "make yes-SHOCK" exited with exit code 0 and output:
Installing package SHOCK

== 2018-05-04 14:42:40,158 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:40,158 lammps.py:220 INFO Building SNAP package
== 2018-05-04 14:42:40,159 run.py:135 DEBUG run_cmd: Output of "make yes-SNAP" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-0BAbKf.log
== 2018-05-04 14:42:40,159 run.py:173 DEBUG run_cmd: running cmd make yes-SNAP (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:40,159 run.py:192 INFO running cmd: make yes-SNAP
== 2018-05-04 14:42:40,274 run.py:506 INFO cmd "make yes-SNAP" exited with exit code 0 and output:
Installing package SNAP

== 2018-05-04 14:42:40,274 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:40,274 lammps.py:220 INFO Building SRD package
== 2018-05-04 14:42:40,275 run.py:135 DEBUG run_cmd: Output of "make yes-SRD" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-VR_VOm.log
== 2018-05-04 14:42:40,275 run.py:173 DEBUG run_cmd: running cmd make yes-SRD (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:40,275 run.py:192 INFO running cmd: make yes-SRD
== 2018-05-04 14:42:40,359 run.py:506 INFO cmd "make yes-SRD" exited with exit code 0 and output:
Installing package SRD

== 2018-05-04 14:42:40,359 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:40,359 lammps.py:220 INFO Building USER-ATC package
== 2018-05-04 14:42:40,359 run.py:135 DEBUG run_cmd: Output of "make yes-USER-ATC" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-dsyQFi.log
== 2018-05-04 14:42:40,359 run.py:173 DEBUG run_cmd: running cmd make yes-USER-ATC (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:40,360 run.py:192 INFO running cmd: make yes-USER-ATC
== 2018-05-04 14:42:40,451 run.py:506 INFO cmd "make yes-USER-ATC" exited with exit code 0 and output:
Installing package USER-ATC

== 2018-05-04 14:42:40,451 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:40,451 lammps.py:220 INFO Building USER-AWPMD package
== 2018-05-04 14:42:40,452 run.py:135 DEBUG run_cmd: Output of "make yes-USER-AWPMD" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-q53_h3.log
== 2018-05-04 14:42:40,452 run.py:173 DEBUG run_cmd: running cmd make yes-USER-AWPMD (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:40,452 run.py:192 INFO running cmd: make yes-USER-AWPMD
== 2018-05-04 14:42:40,564 run.py:506 INFO cmd "make yes-USER-AWPMD" exited with exit code 0 and output:
Installing package USER-AWPMD

== 2018-05-04 14:42:40,564 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:40,564 lammps.py:220 INFO Building USER-CGDNA package
== 2018-05-04 14:42:40,564 run.py:135 DEBUG run_cmd: Output of "make yes-USER-CGDNA" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-mKmYqi.log
== 2018-05-04 14:42:40,565 run.py:173 DEBUG run_cmd: running cmd make yes-USER-CGDNA (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:40,565 run.py:192 INFO running cmd: make yes-USER-CGDNA
== 2018-05-04 14:42:40,779 run.py:506 INFO cmd "make yes-USER-CGDNA" exited with exit code 0 and output:
Installing package USER-CGDNA

== 2018-05-04 14:42:40,780 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:40,780 lammps.py:220 INFO Building USER-CGSDK package
== 2018-05-04 14:42:40,780 run.py:135 DEBUG run_cmd: Output of "make yes-USER-CGSDK" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-BdgszT.log
== 2018-05-04 14:42:40,781 run.py:173 DEBUG run_cmd: running cmd make yes-USER-CGSDK (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:40,781 run.py:192 INFO running cmd: make yes-USER-CGSDK
== 2018-05-04 14:42:41,293 run.py:506 INFO cmd "make yes-USER-CGSDK" exited with exit code 0 and output:
Installing package USER-CGSDK

== 2018-05-04 14:42:41,293 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:41,294 lammps.py:220 INFO Building USER-COLVARS package
== 2018-05-04 14:42:41,294 run.py:135 DEBUG run_cmd: Output of "make yes-USER-COLVARS" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-xGvqjD.log
== 2018-05-04 14:42:41,294 run.py:173 DEBUG run_cmd: running cmd make yes-USER-COLVARS (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:41,294 run.py:192 INFO running cmd: make yes-USER-COLVARS
== 2018-05-04 14:42:41,440 run.py:506 INFO cmd "make yes-USER-COLVARS" exited with exit code 0 and output:
Installing package USER-COLVARS

== 2018-05-04 14:42:41,440 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:41,441 lammps.py:220 INFO Building USER-DIFFRACTION package
== 2018-05-04 14:42:41,441 run.py:135 DEBUG run_cmd: Output of "make yes-USER-DIFFRACTION" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-W6A9Io.log
== 2018-05-04 14:42:41,441 run.py:173 DEBUG run_cmd: running cmd make yes-USER-DIFFRACTION (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:41,441 run.py:192 INFO running cmd: make yes-USER-DIFFRACTION
== 2018-05-04 14:42:41,547 run.py:506 INFO cmd "make yes-USER-DIFFRACTION" exited with exit code 0 and output:
Installing package USER-DIFFRACTION

== 2018-05-04 14:42:41,548 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:41,548 lammps.py:220 INFO Building USER-DPD package
== 2018-05-04 14:42:41,548 run.py:135 DEBUG run_cmd: Output of "make yes-USER-DPD" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-avBOEe.log
== 2018-05-04 14:42:41,548 run.py:173 DEBUG run_cmd: running cmd make yes-USER-DPD (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:41,548 run.py:192 INFO running cmd: make yes-USER-DPD
== 2018-05-04 14:42:41,825 run.py:506 INFO cmd "make yes-USER-DPD" exited with exit code 0 and output:
Installing package USER-DPD

== 2018-05-04 14:42:41,825 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:41,825 lammps.py:220 INFO Building USER-DRUDE package
== 2018-05-04 14:42:41,826 run.py:135 DEBUG run_cmd: Output of "make yes-USER-DRUDE" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-GdCncY.log
== 2018-05-04 14:42:41,826 run.py:173 DEBUG run_cmd: running cmd make yes-USER-DRUDE (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:41,826 run.py:192 INFO running cmd: make yes-USER-DRUDE
== 2018-05-04 14:42:41,957 run.py:506 INFO cmd "make yes-USER-DRUDE" exited with exit code 0 and output:
Installing package USER-DRUDE

== 2018-05-04 14:42:41,957 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:41,958 lammps.py:220 INFO Building USER-EFF package
== 2018-05-04 14:42:41,958 run.py:135 DEBUG run_cmd: Output of "make yes-USER-EFF" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-2bpZYH.log
== 2018-05-04 14:42:41,958 run.py:173 DEBUG run_cmd: running cmd make yes-USER-EFF (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:41,958 run.py:192 INFO running cmd: make yes-USER-EFF
== 2018-05-04 14:42:42,154 run.py:506 INFO cmd "make yes-USER-EFF" exited with exit code 0 and output:
Installing package USER-EFF

== 2018-05-04 14:42:42,154 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:42,154 lammps.py:220 INFO Building USER-FEP package
== 2018-05-04 14:42:42,155 run.py:135 DEBUG run_cmd: Output of "make yes-USER-FEP" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-emqbwz.log
== 2018-05-04 14:42:42,155 run.py:173 DEBUG run_cmd: running cmd make yes-USER-FEP (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:42,155 run.py:192 INFO running cmd: make yes-USER-FEP
== 2018-05-04 14:42:42,514 run.py:506 INFO cmd "make yes-USER-FEP" exited with exit code 0 and output:
Installing package USER-FEP

== 2018-05-04 14:42:42,514 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:42,515 lammps.py:220 INFO Building USER-H5MD package
== 2018-05-04 14:42:42,515 run.py:135 DEBUG run_cmd: Output of "make yes-USER-H5MD" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-pYcIiY.log
== 2018-05-04 14:42:42,515 run.py:173 DEBUG run_cmd: running cmd make yes-USER-H5MD (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:42,516 run.py:192 INFO running cmd: make yes-USER-H5MD
== 2018-05-04 14:42:42,612 run.py:506 INFO cmd "make yes-USER-H5MD" exited with exit code 0 and output:
Installing package USER-H5MD

== 2018-05-04 14:42:42,612 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:42,612 lammps.py:220 INFO Building USER-LB package
== 2018-05-04 14:42:42,612 run.py:135 DEBUG run_cmd: Output of "make yes-USER-LB" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-Ka0PkJ.log
== 2018-05-04 14:42:42,612 run.py:173 DEBUG run_cmd: running cmd make yes-USER-LB (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:42,613 run.py:192 INFO running cmd: make yes-USER-LB
== 2018-05-04 14:42:42,730 run.py:506 INFO cmd "make yes-USER-LB" exited with exit code 0 and output:
Installing package USER-LB

== 2018-05-04 14:42:42,731 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:42,731 lammps.py:220 INFO Building USER-MANIFOLD package
== 2018-05-04 14:42:42,732 run.py:135 DEBUG run_cmd: Output of "make yes-USER-MANIFOLD" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-3RK1nl.log
== 2018-05-04 14:42:42,732 run.py:173 DEBUG run_cmd: running cmd make yes-USER-MANIFOLD (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:42,732 run.py:192 INFO running cmd: make yes-USER-MANIFOLD
== 2018-05-04 14:42:42,989 run.py:506 INFO cmd "make yes-USER-MANIFOLD" exited with exit code 0 and output:
Installing package USER-MANIFOLD

== 2018-05-04 14:42:42,990 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:42,990 lammps.py:220 INFO Building USER-MOLFILE package
== 2018-05-04 14:42:42,990 run.py:135 DEBUG run_cmd: Output of "make yes-USER-MOLFILE" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-C_nkrS.log
== 2018-05-04 14:42:42,990 run.py:173 DEBUG run_cmd: running cmd make yes-USER-MOLFILE (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:42,991 run.py:192 INFO running cmd: make yes-USER-MOLFILE
== 2018-05-04 14:42:43,099 run.py:506 INFO cmd "make yes-USER-MOLFILE" exited with exit code 0 and output:
Installing package USER-MOLFILE

== 2018-05-04 14:42:43,099 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:43,099 lammps.py:220 INFO Building USER-NETCDF package
== 2018-05-04 14:42:43,099 run.py:135 DEBUG run_cmd: Output of "make yes-USER-NETCDF" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-8NbKrQ.log
== 2018-05-04 14:42:43,100 run.py:173 DEBUG run_cmd: running cmd make yes-USER-NETCDF (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:43,100 run.py:192 INFO running cmd: make yes-USER-NETCDF
== 2018-05-04 14:42:43,294 run.py:506 INFO cmd "make yes-USER-NETCDF" exited with exit code 0 and output:
Installing package USER-NETCDF

== 2018-05-04 14:42:43,294 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:43,294 lammps.py:220 INFO Building USER-MEAMC package
== 2018-05-04 14:42:43,294 run.py:135 DEBUG run_cmd: Output of "make yes-USER-MEAMC" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-v5Puxm.log
== 2018-05-04 14:42:43,295 run.py:173 DEBUG run_cmd: running cmd make yes-USER-MEAMC (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:43,295 run.py:192 INFO running cmd: make yes-USER-MEAMC
== 2018-05-04 14:42:43,421 run.py:506 INFO cmd "make yes-USER-MEAMC" exited with exit code 0 and output:
Installing package USER-MEAMC

== 2018-05-04 14:42:43,421 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:43,421 lammps.py:220 INFO Building USER-MGPT package
== 2018-05-04 14:42:43,421 run.py:135 DEBUG run_cmd: Output of "make yes-USER-MGPT" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-9eSOhG.log
== 2018-05-04 14:42:43,422 run.py:173 DEBUG run_cmd: running cmd make yes-USER-MGPT (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:43,422 run.py:192 INFO running cmd: make yes-USER-MGPT
== 2018-05-04 14:42:43,619 run.py:506 INFO cmd "make yes-USER-MGPT" exited with exit code 0 and output:
Installing package USER-MGPT

== 2018-05-04 14:42:43,620 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:43,621 lammps.py:220 INFO Building USER-MISC package
== 2018-05-04 14:42:43,621 run.py:135 DEBUG run_cmd: Output of "make yes-USER-MISC" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-mlqieJ.log
== 2018-05-04 14:42:43,621 run.py:173 DEBUG run_cmd: running cmd make yes-USER-MISC (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:43,621 run.py:192 INFO running cmd: make yes-USER-MISC
== 2018-05-04 14:42:44,725 run.py:506 INFO cmd "make yes-USER-MISC" exited with exit code 0 and output:
Installing package USER-MISC

== 2018-05-04 14:42:44,725 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:44,725 lammps.py:220 INFO Building USER-OMP package
== 2018-05-04 14:42:44,726 run.py:135 DEBUG run_cmd: Output of "make yes-USER-OMP" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-RxvE6o.log
== 2018-05-04 14:42:44,726 run.py:173 DEBUG run_cmd: running cmd make yes-USER-OMP (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:44,726 run.py:192 INFO running cmd: make yes-USER-OMP
== 2018-05-04 14:42:47,116 run.py:506 INFO cmd "make yes-USER-OMP" exited with exit code 0 and output:
Installing package USER-OMP

== 2018-05-04 14:42:47,117 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:47,117 lammps.py:220 INFO Building USER-PHONON package
== 2018-05-04 14:42:47,117 run.py:135 DEBUG run_cmd: Output of "make yes-USER-PHONON" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-I1lOaZ.log
== 2018-05-04 14:42:47,117 run.py:173 DEBUG run_cmd: running cmd make yes-USER-PHONON (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:47,117 run.py:192 INFO running cmd: make yes-USER-PHONON
== 2018-05-04 14:42:47,198 run.py:506 INFO cmd "make yes-USER-PHONON" exited with exit code 0 and output:
Installing package USER-PHONON

== 2018-05-04 14:42:47,198 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:47,198 lammps.py:220 INFO Building USER-QMMM package
== 2018-05-04 14:42:47,199 run.py:135 DEBUG run_cmd: Output of "make yes-USER-QMMM" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-xYn9Z6.log
== 2018-05-04 14:42:47,199 run.py:173 DEBUG run_cmd: running cmd make yes-USER-QMMM (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:47,199 run.py:192 INFO running cmd: make yes-USER-QMMM
== 2018-05-04 14:42:47,288 run.py:506 INFO cmd "make yes-USER-QMMM" exited with exit code 0 and output:
Installing package USER-QMMM

== 2018-05-04 14:42:47,288 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:47,288 lammps.py:220 INFO Building USER-QTB package
== 2018-05-04 14:42:47,289 run.py:135 DEBUG run_cmd: Output of "make yes-USER-QTB" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-NmCysX.log
== 2018-05-04 14:42:47,289 run.py:173 DEBUG run_cmd: running cmd make yes-USER-QTB (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:47,289 run.py:192 INFO running cmd: make yes-USER-QTB
== 2018-05-04 14:42:47,381 run.py:506 INFO cmd "make yes-USER-QTB" exited with exit code 0 and output:
Installing package USER-QTB

== 2018-05-04 14:42:47,381 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:47,381 lammps.py:220 INFO Building USER-QUIP package
== 2018-05-04 14:42:47,381 run.py:135 DEBUG run_cmd: Output of "make yes-USER-QUIP" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-sg5Ge1.log
== 2018-05-04 14:42:47,381 run.py:173 DEBUG run_cmd: running cmd make yes-USER-QUIP (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:47,381 run.py:192 INFO running cmd: make yes-USER-QUIP
== 2018-05-04 14:42:47,469 run.py:506 INFO cmd "make yes-USER-QUIP" exited with exit code 0 and output:
Installing package USER-QUIP

== 2018-05-04 14:42:47,469 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:47,469 lammps.py:220 INFO Building USER-REAXC package
== 2018-05-04 14:42:47,469 run.py:135 DEBUG run_cmd: Output of "make yes-USER-REAXC" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-oREbEX.log
== 2018-05-04 14:42:47,470 run.py:173 DEBUG run_cmd: running cmd make yes-USER-REAXC (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:47,470 run.py:192 INFO running cmd: make yes-USER-REAXC
== 2018-05-04 14:42:49,652 run.py:506 INFO cmd "make yes-USER-REAXC" exited with exit code 0 and output:
Installing package USER-REAXC
  updating package USER-OMP
  updating src/fix_qeq_reax_omp.cpp
  updating src/pair_reaxc_omp.cpp
  updating src/reaxc_bond_orders_omp.cpp
  updating src/reaxc_bonds_omp.cpp
  updating src/reaxc_forces_omp.cpp
  updating src/reaxc_hydrogen_bonds_omp.cpp
  updating src/reaxc_init_md_omp.cpp
  updating src/reaxc_multi_body_omp.cpp
  updating src/reaxc_nonbonded_omp.cpp
  updating src/reaxc_torsion_angles_omp.cpp
  updating src/reaxc_valence_angles_omp.cpp
  updating src/fix_qeq_reax_omp.h
  updating src/pair_reaxc_omp.h
  updating src/reaxc_bond_orders_omp.h
  updating src/reaxc_bonds_omp.h
  updating src/reaxc_forces_omp.h
  updating src/reaxc_hydrogen_bonds_omp.h
  updating src/reaxc_init_md_omp.h
  updating src/reaxc_multi_body_omp.h
  updating src/reaxc_nonbonded_omp.h
  updating src/reaxc_torsion_angles_omp.h
  updating src/reaxc_valence_angles_omp.h

== 2018-05-04 14:42:49,652 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:49,653 lammps.py:220 INFO Building USER-SMD package
== 2018-05-04 14:42:49,653 run.py:135 DEBUG run_cmd: Output of "make yes-USER-SMD" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-xXLcTq.log
== 2018-05-04 14:42:49,653 run.py:173 DEBUG run_cmd: running cmd make yes-USER-SMD (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:49,653 run.py:192 INFO running cmd: make yes-USER-SMD
== 2018-05-04 14:42:50,054 run.py:506 INFO cmd "make yes-USER-SMD" exited with exit code 0 and output:
Installing package USER-SMD

== 2018-05-04 14:42:50,055 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:50,055 lammps.py:220 INFO Building USER-SMTBQ package
== 2018-05-04 14:42:50,055 run.py:135 DEBUG run_cmd: Output of "make yes-USER-SMTBQ" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-4DES60.log
== 2018-05-04 14:42:50,055 run.py:173 DEBUG run_cmd: running cmd make yes-USER-SMTBQ (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:50,056 run.py:192 INFO running cmd: make yes-USER-SMTBQ
== 2018-05-04 14:42:50,147 run.py:506 INFO cmd "make yes-USER-SMTBQ" exited with exit code 0 and output:
Installing package USER-SMTBQ

== 2018-05-04 14:42:50,147 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:50,147 lammps.py:220 INFO Building USER-SPH package
== 2018-05-04 14:42:50,148 run.py:135 DEBUG run_cmd: Output of "make yes-USER-SPH" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-5JF4G3.log
== 2018-05-04 14:42:50,148 run.py:173 DEBUG run_cmd: running cmd make yes-USER-SPH (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:50,148 run.py:192 INFO running cmd: make yes-USER-SPH
== 2018-05-04 14:42:50,342 run.py:506 INFO cmd "make yes-USER-SPH" exited with exit code 0 and output:
Installing package USER-SPH

== 2018-05-04 14:42:50,342 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:50,342 lammps.py:220 INFO Building USER-TALLY package
== 2018-05-04 14:42:50,343 run.py:135 DEBUG run_cmd: Output of "make yes-USER-TALLY" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-0KGbiR.log
== 2018-05-04 14:42:50,343 run.py:173 DEBUG run_cmd: running cmd make yes-USER-TALLY (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:50,343 run.py:192 INFO running cmd: make yes-USER-TALLY
== 2018-05-04 14:42:50,470 run.py:506 INFO cmd "make yes-USER-TALLY" exited with exit code 0 and output:
Installing package USER-TALLY

== 2018-05-04 14:42:50,470 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:50,470 lammps.py:220 INFO Building USER-VTK package
== 2018-05-04 14:42:50,471 run.py:135 DEBUG run_cmd: Output of "make yes-USER-VTK" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-Yxv2dC.log
== 2018-05-04 14:42:50,471 run.py:173 DEBUG run_cmd: running cmd make yes-USER-VTK (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:50,471 run.py:192 INFO running cmd: make yes-USER-VTK
== 2018-05-04 14:42:50,561 run.py:506 INFO cmd "make yes-USER-VTK" exited with exit code 0 and output:
Installing package USER-VTK

== 2018-05-04 14:42:50,562 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:50,562 lammps.py:220 INFO Building VORONOI package
== 2018-05-04 14:42:50,562 run.py:135 DEBUG run_cmd: Output of "make yes-VORONOI" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-0IHVuS.log
== 2018-05-04 14:42:50,562 run.py:173 DEBUG run_cmd: running cmd make yes-VORONOI (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:50,562 run.py:192 INFO running cmd: make yes-VORONOI
== 2018-05-04 14:42:50,656 run.py:506 INFO cmd "make yes-VORONOI" exited with exit code 0 and output:
Installing package VORONOI

== 2018-05-04 14:42:50,657 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:50,657 lammps.py:224 INFO Not building GPU package
== 2018-05-04 14:42:50,657 run.py:135 DEBUG run_cmd: Output of "make no-GPU" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-akQMQI.log
== 2018-05-04 14:42:50,657 run.py:173 DEBUG run_cmd: running cmd make no-GPU (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:50,658 run.py:192 INFO running cmd: make no-GPU
== 2018-05-04 14:42:50,940 run.py:506 INFO cmd "make no-GPU" exited with exit code 0 and output:
Uninstalling package GPU

== 2018-05-04 14:42:50,940 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:50,940 lammps.py:224 INFO Not building KOKKOS package
== 2018-05-04 14:42:50,940 run.py:135 DEBUG run_cmd: Output of "make no-KOKKOS" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-qwOCYy.log
== 2018-05-04 14:42:50,941 run.py:173 DEBUG run_cmd: running cmd make no-KOKKOS (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:50,941 run.py:192 INFO running cmd: make no-KOKKOS
== 2018-05-04 14:42:51,356 run.py:506 INFO cmd "make no-KOKKOS" exited with exit code 0 and output:
Uninstalling package KOKKOS

== 2018-05-04 14:42:51,357 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:51,357 lammps.py:224 INFO Not building MSCG package
== 2018-05-04 14:42:51,357 run.py:135 DEBUG run_cmd: Output of "make no-MSCG" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-JAk1Ye.log
== 2018-05-04 14:42:51,357 run.py:173 DEBUG run_cmd: running cmd make no-MSCG (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:51,358 run.py:192 INFO running cmd: make no-MSCG
== 2018-05-04 14:42:51,442 run.py:506 INFO cmd "make no-MSCG" exited with exit code 0 and output:
Uninstalling package MSCG

== 2018-05-04 14:42:51,442 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:51,442 lammps.py:224 INFO Not building USER-INTEL package
== 2018-05-04 14:42:51,443 run.py:135 DEBUG run_cmd: Output of "make no-USER-INTEL" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-U67QQr.log
== 2018-05-04 14:42:51,443 run.py:173 DEBUG run_cmd: running cmd make no-USER-INTEL (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:51,443 run.py:192 INFO running cmd: make no-USER-INTEL
== 2018-05-04 14:42:52,027 run.py:506 INFO cmd "make no-USER-INTEL" exited with exit code 0 and output:
Uninstalling package USER-INTEL

== 2018-05-04 14:42:52,027 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:52,027 lammps.py:224 INFO Not building USER-QUIP package
== 2018-05-04 14:42:52,027 run.py:135 DEBUG run_cmd: Output of "make no-USER-QUIP" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-Bsampv.log
== 2018-05-04 14:42:52,028 run.py:173 DEBUG run_cmd: running cmd make no-USER-QUIP (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:52,028 run.py:192 INFO running cmd: make no-USER-QUIP
== 2018-05-04 14:42:52,105 run.py:506 INFO cmd "make no-USER-QUIP" exited with exit code 0 and output:
Uninstalling package USER-QUIP

== 2018-05-04 14:42:52,106 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:42:52,106 run.py:135 DEBUG run_cmd: Output of "make package-update" will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-3SE4Zs.log
== 2018-05-04 14:42:52,106 run.py:173 DEBUG run_cmd: running cmd make package-update (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:42:52,106 run.py:192 INFO running cmd: make package-update
== 2018-05-04 14:43:28,621 run.py:508 DEBUG cmd "make package-update" exited with exit code 0 and output:
Updating src files from ASPHERE package files
  updating package ASPHERE
  updating package USER-OMP
  updating package USER-CGDNA
Updating src files from BODY package files
  updating package BODY
Updating src files from CLASS2 package files
  updating package CLASS2
  updating package USER-OMP
Updating src files from COLLOID package files
  updating package COLLOID
  updating package USER-OMP
Updating src files from COMPRESS package files
  updating package COMPRESS
Updating src files from CORESHELL package files
  updating package CORESHELL
Updating src files from DIPOLE package files
  updating package DIPOLE
  updating package USER-MISC
  updating package USER-OMP
Updating src files from GPU package files
  GPU package is not installed
Updating src files from GRANULAR package files
  updating package GRANULAR
  updating package USER-OMP
Updating src files from KIM package files
  updating package KIM
Updating src files from KOKKOS package files
  KOKKOS package is not installed
Updating src files from KSPACE package files
  updating package KSPACE
  updating package CORESHELL
  updating package OPT
  updating package USER-OMP
  updating package USER-PHONON
  updating package USER-FEP
Updating src files from MANYBODY package files
  updating package MANYBODY
  updating package OPT
  updating package USER-MISC
  updating package USER-OMP
Updating src files from MC package files
  updating package MC
Updating src files from MEAM package files
  updating package MEAM
Updating src files from MISC package files
  updating package MISC
Updating src files from MOLECULE package files
  updating package MOLECULE
  updating package USER-MISC
  updating package USER-OMP
  updating package USER-FEP
  updating package USER-CGDNA
Updating src files from MPIIO package files
  updating package MPIIO
Updating src files from MSCG package files
  MSCG package is not installed
Updating src files from OPT package files
  updating package OPT
Updating src files from PERI package files
  updating package PERI
  updating package USER-OMP
Updating src files from POEMS package files
  updating package POEMS
Updating src files from PYTHON package files
  updating package PYTHON
Updating src files from QEQ package files
  updating package QEQ
Updating src files from REAX package files
  updating package REAX
Updating src files from REPLICA package files
  updating package REPLICA
Updating src files from RIGID package files
  updating package RIGID
  updating package USER-OMP
Updating src files from SHOCK package files
  updating package SHOCK
Updating src files from SNAP package files
  updating package SNAP
Updating src files from SRD package files
  updating package SRD
Updating src files from VORONOI package files
  updating package VORONOI

Updating src files from USER-ATC package files
  updating package USER-ATC
Updating src files from USER-AWPMD package files
  updating package USER-AWPMD
Updating src files from USER-CGDNA package files
  updating package USER-CGDNA
Updating src files from USER-CGSDK package files
  updating package USER-CGSDK
  updating package USER-OMP
Updating src files from USER-COLVARS package files
  updating package USER-COLVARS
Updating src files from USER-DIFFRACTION package files
  updating package USER-DIFFRACTION
Updating src files from USER-DPD package files
  updating package USER-DPD
Updating src files from USER-DRUDE package files
  updating package USER-DRUDE
Updating src files from USER-EFF package files
  updating package USER-EFF
Updating src files from USER-FEP package files
  updating package USER-FEP
  updating package USER-OMP
Updating src files from USER-H5MD package files
  updating package USER-H5MD
Updating src files from USER-INTEL package files
  USER-INTEL package is not installed
Updating src files from USER-LB package files
  updating package USER-LB
Updating src files from USER-MANIFOLD package files
  updating package USER-MANIFOLD
Updating src files from USER-MEAMC package files
  updating package USER-MEAMC
Updating src files from USER-MGPT package files
  updating package USER-MGPT
Updating src files from USER-MISC package files
  updating package USER-MISC
  updating package USER-OMP
Updating src files from USER-MOLFILE package files
  updating package USER-MOLFILE
Updating src files from USER-NETCDF package files
  updating package USER-NETCDF
Updating src files from USER-OMP package files
  updating package USER-OMP
Updating src files from USER-PHONON package files
  updating package USER-PHONON
Updating src files from USER-QMMM package files
  updating package USER-QMMM
Updating src files from USER-QTB package files
  updating package USER-QTB
Updating src files from USER-QUIP package files
  USER-QUIP package is not installed
Updating src files from USER-REAXC package files
  updating package USER-REAXC
  updating package USER-OMP
Updating src files from USER-SMD package files
  updating package USER-SMD
Updating src files from USER-SMTBQ package files
  updating package USER-SMTBQ
Updating src files from USER-SPH package files
  updating package USER-SPH
Updating src files from USER-TALLY package files
  updating package USER-TALLY
Updating src files from USER-VTK package files
  updating package USER-VTK

== 2018-05-04 14:43:28,625 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-05-04 14:43:28,628 run.py:135 DEBUG run_cmd: Output of " make -j 8  icc_openmpi FFT_INC="-DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include" FFT_LIB="-lfftw3" FFT_PATH="-L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib" JPG_INC="" JPG_LIB="" JPG_PATH="" LMP_INC="-DLAMMPS_MEMALIGN=64" user-atc_SYSLIB="$LIBLAPACK_MT" meam_SYSLIB="-lifcore -lsvml -liomp5 -limf" user-awpmd_SYSLIB="$LIBLAPACK_MT" " will be logged to /tmp/eb-oNdpYJ/easybuild-run_cmd-YcvIr7.log
== 2018-05-04 14:43:28,628 run.py:173 DEBUG run_cmd: running cmd  make -j 8  icc_openmpi FFT_INC="-DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include" FFT_LIB="-lfftw3" FFT_PATH="-L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib" JPG_INC="" JPG_LIB="" JPG_PATH="" LMP_INC="-DLAMMPS_MEMALIGN=64" user-atc_SYSLIB="$LIBLAPACK_MT" meam_SYSLIB="-lifcore -lsvml -liomp5 -limf" user-awpmd_SYSLIB="$LIBLAPACK_MT"  (in /home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src)
== 2018-05-04 14:43:28,628 run.py:192 INFO running cmd:  make -j 8  icc_openmpi FFT_INC="-DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include" FFT_LIB="-lfftw3" FFT_PATH="-L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib" JPG_INC="" JPG_LIB="" JPG_PATH="" LMP_INC="-DLAMMPS_MEMALIGN=64" user-atc_SYSLIB="$LIBLAPACK_MT" meam_SYSLIB="-lifcore -lsvml -liomp5 -limf" user-awpmd_SYSLIB="$LIBLAPACK_MT"
== 2018-05-04 14:44:23,884 run.py:506 INFO cmd " make -j 8  icc_openmpi FFT_INC="-DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include" FFT_LIB="-lfftw3" FFT_PATH="-L/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/lib" JPG_INC="" JPG_LIB="" JPG_PATH="" LMP_INC="-DLAMMPS_MEMALIGN=64" user-atc_SYSLIB="$LIBLAPACK_MT" meam_SYSLIB="-lifcore -lsvml -liomp5 -limf" user-awpmd_SYSLIB="$LIBLAPACK_MT" " exited with exit code 0 and output:
make[1]: warning: -jN forced in submake: disabling jobserver mode.
make[1]: Entering directory '/home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src/Obj_icc_openmpi'
cc -O -o fastdep.exe ../DEPEND/fastdep.c
make[1]: Leaving directory '/home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src/Obj_icc_openmpi'
make[1]: warning: -jN forced in submake: disabling jobserver mode.
make[1]: Entering directory '/home/mboisson/.local/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/lammps-omp/20170811/src/Obj_icc_openmpi'
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../angle_cosine_periodic.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../min_cg.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_cnp_atom.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_ke.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../improper_class2.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_half_size_bin_newtoff.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_npt_body.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_born_coul_dsf.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../dihedral_class2_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_long_dipole_long.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_erotate_sphere.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_buck_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_external.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_resquared.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../finish.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../run.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../image.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_full_nsq_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_rigid_nvt.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_full_bin_atomonly_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_morse_smooth_linear.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_halffull_newton_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_cut_dipole_cut_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../rerun.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../dump_cfg_mpiio.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_expand_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_cut_dipole_long.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_chunk_atom.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_smd_ulsph.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../reader_native.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../atom_vec_molecular.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_buck.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_drag.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../manifold_plane.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_nve_eff.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_table_rx.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_resquared_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_beck_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_rigid_nve.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../write_dump.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_full_nsq.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../bond_table_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_full_bin_atomonly.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_angle_local.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../random_mars.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_eos_table_rx.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../min_fire.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../improper_fourier_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_expand.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_langevin_eff.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../angle_fourier.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_smd_tlsph_strain_rate.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../improper_cossq_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_hbond_dreiding_morse.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_manifoldforce.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_npt_asphere.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_edip.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_beck.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_cubic_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_pair_local.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_nphug_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../reaxc_allocate.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_half_respa_bin_newton_tri_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../imbalance_var.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_nvt_sllod_eff.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../improper_umbrella.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../angle_dipole.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../reaxc_io_tools.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_setforce.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_nve_asphere.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_peri_neigh_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_coul_wolf_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../bond_nonlinear.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_wall_piston.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_cut_soft.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_oxdna_xstk.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_sf_dipole_sf_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../angle_cosine_shift_exp_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../angle_fourier_simple.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_coul_streitz.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_stress_tally.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_full_bin_ghost.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_orient_bcc.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_hybrid_overlay.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_born_coul_long_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../comm.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_half_respa_nsq_newton.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_damage_atom.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../atom_vec_sphere.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../group.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../dump_xyz.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_eam_alloy.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_half_nsq_newtoff_ghost_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_coul_wolf.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../dump_atom_mpiio.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../manifold_plane_wiggle.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../mgpt_splinetab.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_temp_berendsen.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_rattle.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../manifold_dumbbell.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../dihedral_cosine_shift_exp_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_event.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../dump_h5md.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_controller.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../atom_vec.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_ave_chunk.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_cut_coul_debye_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../reaxc_bonds_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_smd_move_triangulated_surface.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_nve_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_spring_rg.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_momb.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_morse_opt.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../compute_spec_atom.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_born_coul_long.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../npair_half_multi_newton_tri.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_qbmsst.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_edip_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../min_linesearch.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_nve_sphere.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../dihedral_charmm_omp.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../remap.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../region_cone.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_ehex.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../reaxc_control.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_atc.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_lj_cut_coul_msm.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../modify.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../fix_flow_gauss.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1/include    -c ../pair_coul_msm.cpp
mpicxx -g -O2 -fopenmp -restrict   -DLAMMPS_MEMALIGN=64 -I../../lib/voronoi/includelink -I../../lib/smd/includelink -I../../lib/qmmm -DLMP_USER_OMP -I../../lib/h5md/include -I../../lib/colvars -I../../lib/awpmd/ivutils/include -I../../lib/awpmd/systems/interact -I../../lib/atc -I../../lib/reax -DLMP_PYTHON -I../../lib/poems -DLMP_MPIIO -I../../lib/meam  -DMPICH_SKIP_MPICXX -DOMPI_SKIP_MPICXX=1 -DFFT_FFTW3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/fftw-mpi/3.3.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/voro++/0.4.6/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vtk/6.3.0/include/vtk-6.3 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/eigen/3.3.2/include/Eigen   -DLMP_HAS_NETCDF -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/MPI/intel2016.4/openmpi2.1/quantumespresso/6.1/qe-6.1/YAMBO/lib/netcdf/tmp/include -DpgiFortran -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/vmd/1.9.3/lib/plugins/include/   -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/imkl/11.3.4.258/mkl/include  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7 -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/Core/python/2.7.14/include/python2.7  -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/avx2/Compiler/intel2016.4/kim/1.8.2/lib/kim-api-v1