easybuild-BLASR-5.3.0-20190130.015139.oNeJt.log

== 2019-01-30 01:51:39,926 easyblock.py:272 INFO This is EasyBuild 3.8.0-r44266da00f3e49516ba75daf6d4f2c8704487471 (framework: 3.8.0-r2f58107c2b9aed07020e61c148688ed4f1c9a299, easyblocks: 3.8.0-r44266da00f3e49516ba75daf6d4f2c8704487471) on host build-node.
== 2019-01-30 01:51:39,926 easyblock.py:278 INFO This is easyblock CMakeMake from module easybuild.easyblocks.generic.cmakemake (/cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-easyblocks/easybuild/easyblocks/generic/cmakemake.pyo)
== 2019-01-30 01:51:39,926 easyblock.py:832 INFO Build dir set to /dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3
== 2019-01-30 01:51:39,927 easyblock.py:873 INFO Software install dir set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/blasr/5.3.0
== 2019-01-30 01:51:39,927 easyblock.py:878 INFO Module install dir set to /cvmfs/soft.computecanada.ca/easybuild/modules/2017/
== 2019-01-30 01:51:39,927 easyblock.py:257 INFO Init completed for application name BLASR version 5.3.0
== 2019-01-30 01:51:39,927 easyblock.py:2847 INFO Obtained application instance of for BLASR (easyblock: CMakeMake)
== 2019-01-30 01:51:39,928 one.py:145 INFO Skipping reformatting value for parameter 'toolchain'
== 2019-01-30 01:51:39,930 filetools.py:1201 INFO Creating directory /tmp/eb-S5RWzv/reprod (parents: True, set_gid: False, sticky: False)
== 2019-01-30 01:51:39,930 easyblock.py:3016 INFO Dumped easyconfig instance to /tmp/eb-S5RWzv/reprod/BLASR-5.3.0-iccifort-2018.3.eb
== 2019-01-30 01:51:39,931 filetools.py:1201 INFO Creating directory /tmp/eb-S5RWzv/reprod/easyblocks (parents: True, set_gid: False, sticky: False)
== 2019-01-30 01:51:39,931 filetools.py:1671 INFO /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-easyblocks/easybuild/easyblocks/generic/cmakemake.py copied to /tmp/eb-S5RWzv/reprod/easyblocks/cmakemake.py
== 2019-01-30 01:51:39,931 easyblock.py:3031 INFO Dumped easyblock cmakemake.py required for reproduction to /tmp/eb-S5RWzv/reprod/easyblocks
== 2019-01-30 01:51:39,931 filetools.py:1671 INFO /cvmfs/soft.computecanada.ca/easybuild/lib/python2.7/site-packages/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py copied to /tmp/eb-S5RWzv/reprod/easyblocks/configuremake.py
== 2019-01-30 01:51:39,931 easyblock.py:3031 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/eb-S5RWzv/reprod/easyblocks
== 2019-01-30 01:51:39,932 filetools.py:1201 INFO Creating directory /tmp/eb-S5RWzv/reprod/hooks (parents: True, set_gid: False, sticky: False)
== 2019-01-30 01:51:39,932 filetools.py:1671 INFO /cvmfs/soft.computecanada.ca/easybuild/cc_hooks.py copied to /tmp/eb-S5RWzv/reprod/hooks/cc_hooks.py
== 2019-01-30 01:51:39,932 easyblock.py:3038 INFO Dumped hooks file /cvmfs/soft.computecanada.ca/easybuild/cc_hooks.py which is (potentially) required for reproduction to /tmp/eb-S5RWzv/reprod/hooks/cc_hooks.py
== 2019-01-30 01:51:39,932 build_log.py:252 INFO building and installing sse3/Compiler/intel2018.3/blasr/5.3.0...
== 2019-01-30 01:51:39,932 build_log.py:252 INFO fetching files...
== 2019-01-30 01:51:39,932 easyblock.py:2623 INFO Starting fetch step
== 2019-01-30 01:51:39,933 easyblock.py:2629 INFO Running method fetch_step part of step fetch
== 2019-01-30 01:51:39,933 easyblock.py:1604 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2019-01-30 01:51:39,933 filetools.py:394 INFO Command eb found at /cvmfs/soft.computecanada.ca/easybuild/bin/eb
== 2019-01-30 01:51:39,934 easyblock.py:660 INFO Found file blasr-5.3.0.tar.gz at /cvmfs/soft.computecanada.ca/easybuild/sources/b/BLASR/blasr-5.3.0.tar.gz
== 2019-01-30 01:51:39,934 easyblock.py:386 INFO Added sources: [{'path': '/cvmfs/soft.computecanada.ca/easybuild/sources/b/BLASR/blasr-5.3.0.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3', 'name': 'blasr-5.3.0.tar.gz', 'checksum': None}]
== 2019-01-30 01:51:39,934 easyblock.py:1645 INFO no patches provided
== 2019-01-30 01:51:40,057 easyblock.py:1655 INFO md5 checksum for /cvmfs/soft.computecanada.ca/easybuild/sources/b/BLASR/blasr-5.3.0.tar.gz: 61fb54d33192bff58fbf7d252ba01215
== 2019-01-30 01:51:40,191 easyblock.py:1655 INFO sha256 checksum for /cvmfs/soft.computecanada.ca/easybuild/sources/b/BLASR/blasr-5.3.0.tar.gz: f2c03757cc3e1bcc834ec1b005a7a427bbab7251b3ddceb6b8ef04ebeb4445e6
== 2019-01-30 01:51:40,192 easyblock.py:1690 INFO Checking dirs that need to be created: ['/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/blasr/5.3.0', '/cvmfs/soft.computecanada.ca/easybuild/modules/2017/sse3/Compiler/intel2018.3/blasr']
== 2019-01-30 01:51:40,192 configuremake.py:114 INFO Found recent config.guess at /cvmfs/soft.computecanada.ca/easybuild/sources/generic/eb_v3.8.0/ConfigureMake/config.guess, using it if required
== 2019-01-30 01:51:40,192 build_log.py:252 INFO creating build dir, resetting environment...
== 2019-01-30 01:51:40,192 easyblock.py:2623 INFO Starting ready step
== 2019-01-30 01:51:40,192 easyblock.py:2629 INFO Running method check_readiness_step part of step ready
== 2019-01-30 01:51:40,193 easyblock.py:1542 INFO Setting parallelism: 8
== 2019-01-30 01:51:40,237 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2019-01-30 01:51:40,238 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-01-30 01:51:40,238 easyblock.py:1556 WARNING Loaded modules detected: ['nixpkgs/16.09']
== 2019-01-30 01:51:40,238 easyblock.py:2629 INFO Running method make_builddir part of step ready
== 2019-01-30 01:51:40,238 easyblock.py:898 INFO Found old directory /dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3
== 2019-01-30 01:51:40,265 filetools.py:1297 INFO Path /dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3 successfully removed.
== 2019-01-30 01:51:40,265 easyblock.py:905 INFO Removed old directory /dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3
== 2019-01-30 01:51:40,265 filetools.py:1201 INFO Creating directory /dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3 (parents: True, set_gid: False, sticky: False)
== 2019-01-30 01:51:40,266 easyblock.py:2629 INFO Running method env_reset_changes part of step ready
== 2019-01-30 01:51:40,266 easyblock.py:2629 INFO Running method handle_iterate_opts part of step ready
== 2019-01-30 01:51:40,266 build_log.py:252 INFO unpacking...
== 2019-01-30 01:51:40,266 easyblock.py:2623 INFO Starting source step
== 2019-01-30 01:51:40,266 easyblock.py:2629 INFO Running method checksum_step part of step source
== 2019-01-30 01:51:40,267 easyblock.py:1706 INFO Checksum verification for /cvmfs/soft.computecanada.ca/easybuild/sources/b/BLASR/blasr-5.3.0.tar.gz using None passed.
== 2019-01-30 01:51:40,267 easyblock.py:2629 INFO Running method extract_step part of step source
== 2019-01-30 01:51:40,267 easyblock.py:1774 INFO Unpacking source blasr-5.3.0.tar.gz
== 2019-01-30 01:51:40,268 run.py:192 INFO running cmd: tar xzf /cvmfs/soft.computecanada.ca/easybuild/sources/b/BLASR/blasr-5.3.0.tar.gz 
== 2019-01-30 01:51:40,822 build_log.py:252 INFO patching...
== 2019-01-30 01:51:40,822 easyblock.py:2623 INFO Starting patch step
== 2019-01-30 01:51:40,823 easyblock.py:2629 INFO Running method patch_step part of step patch
== 2019-01-30 01:51:40,823 build_log.py:252 INFO preparing...
== 2019-01-30 01:51:40,823 easyblock.py:2623 INFO Starting prepare step
== 2019-01-30 01:51:40,823 easyblock.py:2629 INFO Running method prepare_step part of step prepare
== 2019-01-30 01:51:42,289 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2019-01-30 01:51:42,289 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-01-30 01:51:44,471 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2019-01-30 01:51:44,472 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-01-30 01:51:44,521 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2019-01-30 01:51:44,521 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-01-30 01:51:45,606 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2019-01-30 01:51:45,606 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-01-30 01:51:45,664 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2019-01-30 01:51:45,664 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-01-30 01:51:46,807 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2019-01-30 01:51:46,808 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-01-30 01:51:47,800 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2019-01-30 01:51:47,801 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-01-30 01:51:48,850 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2019-01-30 01:51:48,850 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2019-01-30 01:51:50,059 toolchain.py:643 INFO List of toolchain dependency modules and toolchain definition match!
== 2019-01-30 01:51:50,061 options.py:90 WARNING option: option with name _opt_CC returns None
== 2019-01-30 01:51:50,061 options.py:90 WARNING option: option with name _opt_CXX returns None
== 2019-01-30 01:51:50,061 options.py:90 WARNING option: option with name _opt_F77 returns None
== 2019-01-30 01:51:50,062 options.py:90 WARNING option: option with name _opt_F90 returns None
== 2019-01-30 01:51:50,062 options.py:90 WARNING option: option with name _opt_FC returns None
== 2019-01-30 01:51:50,063 compiler.py:349 INFO _set_optimal_architecture: using msse3 as optarch for x86_64.
== 2019-01-30 01:51:50,065 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/hdf5/1.8.20/lib64 was not found
== 2019-01-30 01:51:50,066 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/htslib/1.9/lib64 was not found
== 2019-01-30 01:51:50,066 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/boost/1.68.0/lib64 was not found
== 2019-01-30 01:51:50,067 environment.py:97 INFO Environment variable CC set to icc (previously undefined)
== 2019-01-30 01:51:50,067 environment.py:97 INFO Environment variable EBVARCC set to icc (previously undefined)
== 2019-01-30 01:51:50,067 environment.py:97 INFO Environment variable CFLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,067 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,068 environment.py:97 INFO Environment variable CPPFLAGS set to -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/hdf5/1.8.20/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/htslib/1.9/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/boost/1.68.0/include (previously undefined)
== 2019-01-30 01:51:50,068 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/hdf5/1.8.20/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/htslib/1.9/include -I/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/boost/1.68.0/include (previously undefined)
== 2019-01-30 01:51:50,068 environment.py:97 INFO Environment variable CXX set to icpc (previously undefined)
== 2019-01-30 01:51:50,068 environment.py:97 INFO Environment variable EBVARCXX set to icpc (previously undefined)
== 2019-01-30 01:51:50,068 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,068 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,068 environment.py:97 INFO Environment variable F77 set to ifort (previously undefined)
== 2019-01-30 01:51:50,068 environment.py:97 INFO Environment variable EBVARF77 set to ifort (previously undefined)
== 2019-01-30 01:51:50,069 environment.py:97 INFO Environment variable F90 set to ifort (previously undefined)
== 2019-01-30 01:51:50,069 environment.py:97 INFO Environment variable EBVARF90 set to ifort (previously undefined)
== 2019-01-30 01:51:50,069 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,069 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,069 environment.py:97 INFO Environment variable FC set to ifort (previously undefined)
== 2019-01-30 01:51:50,069 environment.py:97 INFO Environment variable EBVARFC set to ifort (previously undefined)
== 2019-01-30 01:51:50,069 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,069 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,070 environment.py:97 INFO Environment variable FFLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,070 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -msse3 -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,070 environment.py:97 INFO Environment variable LDFLAGS set to -L/cvmfs/restricted.computecanada.ca/easybuild/software/2017/Core/icc/2018.3.222/lib/intel64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/hdf5/1.8.20/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/htslib/1.9/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/boost/1.68.0/lib (previously undefined)
== 2019-01-30 01:51:50,070 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/cvmfs/restricted.computecanada.ca/easybuild/software/2017/Core/icc/2018.3.222/lib/intel64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/hdf5/1.8.20/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/htslib/1.9/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/boost/1.68.0/lib (previously undefined)
== 2019-01-30 01:51:50,070 environment.py:97 INFO Environment variable LIBS set to -liomp5 -lpthread (previously undefined)
== 2019-01-30 01:51:50,070 environment.py:97 INFO Environment variable EBVARLIBS set to -liomp5 -lpthread (previously undefined)
== 2019-01-30 01:51:50,070 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -msse3 (previously undefined)
== 2019-01-30 01:51:50,070 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -msse3 (previously undefined)
== 2019-01-30 01:51:50,071 environment.py:97 INFO Environment variable PRECFLAGS set to -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,071 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -ftz -fp-speculation=safe -fp-model source (previously undefined)
== 2019-01-30 01:51:50,071 easyblock.py:1472 INFO Using /dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3/blasr/ as start dir
== 2019-01-30 01:51:50,071 build_log.py:252 INFO configuring...
== 2019-01-30 01:51:50,071 easyblock.py:2623 INFO Starting configure step
== 2019-01-30 01:51:50,072 easyblock.py:2629 INFO Running method configure_step part of step configure
== 2019-01-30 01:51:50,072 environment.py:97 INFO Environment variable CMAKE_INCLUDE_PATH set to /cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/hdf5/1.8.20/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/htslib/1.9/include:/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/boost/1.68.0/include:/cvmfs/restricted.computecanada.ca/easybuild/software/2017/Core/ifort/2018.3.222/include:/cvmfs/restricted.computecanada.ca/easybuild/software/2017/Core/icc/2018.3.222/compilers_and_libraries_2018.3.222/linux/tbb/include:/cvmfs/soft.computecanada.ca/nix/var/nix/profiles/gcc-7.3.0/include (previously undefined)
== 2019-01-30 01:51:50,072 environment.py:97 INFO Environment variable CMAKE_LIBRARY_PATH set to /cvmfs/restricted.computecanada.ca/easybuild/software/2017/Core/icc/2018.3.222/lib/intel64:/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/hdf5/1.8.20/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/htslib/1.9/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/boost/1.68.0/lib: (previously undefined)
== 2019-01-30 01:51:50,072 filetools.py:1201 INFO Creating directory /dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3/easybuild_obj (parents: True, set_gid: False, sticky: False)
== 2019-01-30 01:51:50,073 run.py:192 INFO running cmd:  cmake -DCMAKE_INSTALL_PREFIX=/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/blasr/5.3.0 -DCMAKE_C_COMPILER='icc' -DCMAKE_Fortran_FLAGS='-O2 -msse3 -ftz -fp-speculation=safe -fp-model source' -DCMAKE_CXX_FLAGS='-O2 -msse3 -ftz -fp-speculation=safe -fp-model source' -DCMAKE_CXX_COMPILER='icpc' -DCMAKE_Fortran_COMPILER='ifort' -DCMAKE_C_FLAGS='-O2 -msse3 -ftz -fp-speculation=safe -fp-model source' -DCMAKE_VERBOSE_MAKEFILE=ON  -DZLIB_ROOT=$NIXUSER_PROFILE  -DOPENGL_INCLUDE_DIR=$NIXUSER_PROFILE/include -DOPENGL_gl_LIBRARY=$NIXUSER_PROFILE/lib/libGL.so  -DOPENGL_glu_LIBRARY=$NIXUSER_PROFILE/lib/libGLU.so  -DJPEG_INCLUDE_DIR=$NIXUSER_PROFILE/include -DJPEG_LIBRARY=$NIXUSER_PROFILE/lib/libjpeg.so  -DPNG_PNG_INCLUDE_DIR=$NIXUSER_PROFILE/include -DPNG_LIBRARY=$NIXUSER_PROFILE/lib/libpng.so  -DPYTHON_EXECUTABLE=$EBROOTPYTHON/bin/python  -DCURL_LIBRARY=$NIXUSER_PROFILE/lib/libcurl.so -DCURL_INCLUDE_DIR=$NIXUSER_PROFILE/include  -DCMAKE_SYSTEM_PREFIX_PATH=$NIXUSER_PROFILE  -DCMAKE_SKIP_INSTALL_RPATH=ON  -DZLIB_ROOT=$NIXUSER_PROFILE  -DOPENGL_INCLUDE_DIR=$NIXUSER_PROFILE/include -DOPENGL_gl_LIBRARY=$NIXUSER_PROFILE/lib/libGL.so  -DOPENGL_glu_LIBRARY=$NIXUSER_PROFILE/lib/libGLU.so  -DJPEG_INCLUDE_DIR=$NIXUSER_PROFILE/include -DJPEG_LIBRARY=$NIXUSER_PROFILE/lib/libjpeg.so  -DPNG_PNG_INCLUDE_DIR=$NIXUSER_PROFILE/include -DPNG_LIBRARY=$NIXUSER_PROFILE/lib/libpng.so  -DPYTHON_EXECUTABLE=$EBROOTPYTHON/bin/python  -DCURL_LIBRARY=$NIXUSER_PROFILE/lib/libcurl.so -DCURL_INCLUDE_DIR=$NIXUSER_PROFILE/include  -DCMAKE_SKIP_RPATH=ON -GNinja && ninja install /dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3/blasr/ 
== 2019-01-30 01:51:50,163 build_log.py:162 ERROR EasyBuild crashed with an error (at ?:124 in __init__): cmd " cmake -DCMAKE_INSTALL_PREFIX=/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/blasr/5.3.0 -DCMAKE_C_COMPILER='icc' -DCMAKE_Fortran_FLAGS='-O2 -msse3 -ftz -fp-speculation=safe -fp-model source' -DCMAKE_CXX_FLAGS='-O2 -msse3 -ftz -fp-speculation=safe -fp-model source' -DCMAKE_CXX_COMPILER='icpc' -DCMAKE_Fortran_COMPILER='ifort' -DCMAKE_C_FLAGS='-O2 -msse3 -ftz -fp-speculation=safe -fp-model source' -DCMAKE_VERBOSE_MAKEFILE=ON  -DZLIB_ROOT=$NIXUSER_PROFILE  -DOPENGL_INCLUDE_DIR=$NIXUSER_PROFILE/include -DOPENGL_gl_LIBRARY=$NIXUSER_PROFILE/lib/libGL.so  -DOPENGL_glu_LIBRARY=$NIXUSER_PROFILE/lib/libGLU.so  -DJPEG_INCLUDE_DIR=$NIXUSER_PROFILE/include -DJPEG_LIBRARY=$NIXUSER_PROFILE/lib/libjpeg.so  -DPNG_PNG_INCLUDE_DIR=$NIXUSER_PROFILE/include -DPNG_LIBRARY=$NIXUSER_PROFILE/lib/libpng.so  -DPYTHON_EXECUTABLE=$EBROOTPYTHON/bin/python  -DCURL_LIBRARY=$NIXUSER_PROFILE/lib/libcurl.so -DCURL_INCLUDE_DIR=$NIXUSER_PROFILE/include  -DCMAKE_SYSTEM_PREFIX_PATH=$NIXUSER_PROFILE  -DCMAKE_SKIP_INSTALL_RPATH=ON  -DZLIB_ROOT=$NIXUSER_PROFILE  -DOPENGL_INCLUDE_DIR=$NIXUSER_PROFILE/include -DOPENGL_gl_LIBRARY=$NIXUSER_PROFILE/lib/libGL.so  -DOPENGL_glu_LIBRARY=$NIXUSER_PROFILE/lib/libGLU.so  -DJPEG_INCLUDE_DIR=$NIXUSER_PROFILE/include -DJPEG_LIBRARY=$NIXUSER_PROFILE/lib/libjpeg.so  -DPNG_PNG_INCLUDE_DIR=$NIXUSER_PROFILE/include -DPNG_LIBRARY=$NIXUSER_PROFILE/lib/libpng.so  -DPYTHON_EXECUTABLE=$EBROOTPYTHON/bin/python  -DCURL_LIBRARY=$NIXUSER_PROFILE/lib/libcurl.so -DCURL_INCLUDE_DIR=$NIXUSER_PROFILE/include  -DCMAKE_SKIP_RPATH=ON -GNinja && ninja install /dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3/blasr/" exited with exit code 1 and output:
CMake Error: The source directory "/dev/shm/ebuser/sse3/BLASR/5.3.0/iccifort-2018.3/easybuild_obj" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
 (at easybuild/lib/python2.7/site-packages/easybuild-framework/easybuild/tools/run.py:501 in parse_cmd_output)
== 2019-01-30 01:51:50,163 easyblock.py:2877 WARNING build failed (first 300 chars): cmd " cmake -DCMAKE_INSTALL_PREFIX=/cvmfs/soft.computecanada.ca/easybuild/software/2017/sse3/Compiler/intel2018.3/blasr/5.3.0 -DCMAKE_C_COMPILER='icc' -DCMAKE_Fortran_FLAGS='-O2 -msse3 -ftz -fp-speculation=safe -fp-model source' -DCMAKE_CXX_FLAGS='-O2 -msse3 -ftz -fp-speculation=safe -fp-model sourc
== 2019-01-30 01:51:50,163 easyblock.py:287 INFO Closing log for application name BLASR version 5.3.0