mcs07

#!/usr/bin/env python
# -*- coding: utf-8 -*-
import copy
from itertools import tee, izip
import logging
from rdkit import Chem
from rdkit.Chem.rdchem import BondType, BondStereo, BondDir


__author__ = 'Matt Swain'

mcs07

-- Parse booking confirmation emails from Cinema and add Calendar event
-- Author: Matt Swain <m.swain@me.com>, Version 1.0, License: MIT

-- Triggered by Mail rule.
using terms from application "Mail"
	on perform mail action with messages msgs for rule theRule
		tell application "Mail"
			repeat with msg in msgs
				try
					set msgcontent to content of msg

mcs07

#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""Download all UV-Vis spectra available from NIST Chemistry Webbook."""
import os
import re

import requests
from bs4 import BeautifulSoup

mcs07

diff --git a/INCHI_API/gcc_so_makefile/libinchi.map b/INCHI_API/gcc_so_makefile/libinchi.map
index 0526992..0f768c8 100755
--- a/INCHI_API/gcc_so_makefile/libinchi.map
+++ b/INCHI_API/gcc_so_makefile/libinchi.map
@@ -1,5 +1,32 @@
-{
-global: CheckINCHI; CheckINCHIKey; FreeINCHI; FreeStdINCHI; FreeStructFromINCHI; FreeStructFromStdINCHI; Free_inchi_Input; Free_std_inchi_Input; GetINCHI; GetINCHIKeyFromINCHI; GetINCHIfromINCHI; GetStdINCHI; GetStdINCHIKeyFromStdINCHI; GetStringLength; GetStructFromINCHI; GetStructFromStdINCHI; Get_inchi_Input_FromAuxInfo; Get_std_inchi_Input_FromAuxInfo; INCHIGEN_Create; INCHIGEN_Destroy; INCHIGEN_DoCanonicalization; INCHIGEN_DoNormalization; INCHIGEN_DoSerialization; INCHIGEN_Reset; INCHIGEN_Setup; STDINCHIGEN_Create; STDINCHIGEN_Destroy; STDINCHIGEN_DoCanonicalization; STDINCHIGEN_DoNormalization; STDINCHIGEN_DoSerialization; STDINCHIGEN_Reset; STDINCHIGEN_Setup; 
-local: *;
-};
-

mcs07

#!/usr/bin/env python
# -*- coding: utf-8 -*-
""" Save versioned backups of collections in MongoDB. Quick and dirty. """


import datetime
import shutil
import os
import subprocess
import zipfile

mcs07

diff --git a/src/osra_lib.cpp b/src/osra_lib.cpp
index 4262e83..48979ae 100644
--- a/src/osra_lib.cpp
+++ b/src/osra_lib.cpp
@@ -635,7 +635,7 @@ int osra_process_image(
   if (type.empty() || type == "PDF" || type == "PS")
     {
 #ifdef OSRA_LIB
-      poppler_doc = load_from_raw_data(image_data, image_length);
+      poppler_doc = poppler::document::load_from_raw_data(image_data, image_length);

mcs07

/**********************************************************************
Copyright (c) 2013 by Matt Swain <m.swain@me.com>

The MIT License

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is

mcs07

diff --git a/boost/python/object/class_metadata.hpp b/boost/python/object/class_metadata.hpp
index c71cf67..5009c17 100644
--- a/boost/python/object/class_metadata.hpp
+++ b/boost/python/object/class_metadata.hpp
@@ -164,7 +164,7 @@ struct class_metadata
     >::type held_type;
 
     // Determine if the object will be held by value
-    typedef is_convertible<held_type*,T*> use_value_holder;
+    typedef mpl::bool_<is_convertible<held_type*,T*>::value> use_value_holder;

mcs07

diff --git a/src/osra_grayscale.cpp b/src/osra_grayscale.cpp
index 32816ed..1b819d1 100644
--- a/src/osra_grayscale.cpp
+++ b/src/osra_grayscale.cpp
@@ -266,12 +266,12 @@ bool convert_to_gray(Image &image, bool invert, bool adaptive, bool verbose)
       image.despeckle();
       if (invert)
         {
-          image.adaptiveThreshold(window,window,7);
+          image.adaptiveThreshold(window,window,7.0);

mcs07

Download:

cd /opt
wget https://github.com/rdkit/rdkit/archive/Release_2015_09_2.tar.gz
tar -xvf Release_2015_09_2.tar.gz
mv rdkit-Release_2015_09_2 rdkit_2015_09_2

Setup environment:

cd /opt/rdkit_2015_09_2