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class SimplePeptide: | |
""" | |
This allows comparisons between peptide sequences that are nearly identical | |
except for the Isboaric Isoleucine and Leucine [IL]. MS Proteomics is based on | |
identifying peptides based on their fragment mass profiles. Since [IL] have the | |
same mass they can not be differentiated. | |
The equals is acomplished by a simple replacement of all r'[IL]' in the sequence with | |
the string [IL]. Then an exact match (No Regex matching needed) is the most efficient | |
way to match two peptides. |
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" | |
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> | |
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"> | |
<head><title>ProbeSearch</title> | |
<meta http-equiv="Content-Type" content="text/html;charset=utf-8" /> | |
<link rel="stylesheet" href="./include/blueprint/screen.css" type="text/css" media="screen, projection"/> | |
<link rel="stylesheet" href="./include/blueprint/ie.css" type="text/css" media="screen, projection"/> | |
<link rel="stylesheet" type="text/css" href="./include/genesearch.css" /> |
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package org.zertz.genesearch.web.ajax; | |
import org.apache.commons.logging.Log; | |
import org.apache.commons.logging.LogFactory; | |
import org.springframework.web.servlet.mvc.SimpleFormController; | |
import org.springframework.web.servlet.ModelAndView; | |
import org.springframework.web.servlet.view.AbstractView; | |
import org.springframework.core.io.Resource; | |
import javax.servlet.http.HttpServletRequest; |
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> | |
<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"> | |
<head><title>OncExpress:Analyze</title> | |
<link media="screen, projection" type="text/css" href="./include/blueprint/screen.css" rel="stylesheet"> | |
<link rel="stylesheet" href="http://www.blueprintcss.org/blueprint/screen.css" type="text/css" media="screen, projection"> | |
<style type="text/css" > | |
div.cart { | |
clear:both; |