mdjones
mdjones
/ gist:123652
Created
June 4, 2009 14:38
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| <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> | |
| <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"> | |
| <head><title>OncExpress:Analyze</title> | |
| <link media="screen, projection" type="text/css" href="./include/blueprint/screen.css" rel="stylesheet"> | |
| <link rel="stylesheet" href="http://www.blueprintcss.org/blueprint/screen.css" type="text/css" media="screen, projection"> | |
| <style type="text/css" > | |
| div.cart { | |
| clear:both; |
mdjones
/ gist:127914
Created
June 11, 2009 14:15
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| package org.zertz.genesearch.web.ajax; | |
| import org.apache.commons.logging.Log; | |
| import org.apache.commons.logging.LogFactory; | |
| import org.springframework.web.servlet.mvc.SimpleFormController; | |
| import org.springframework.web.servlet.ModelAndView; | |
| import org.springframework.web.servlet.view.AbstractView; | |
| import org.springframework.core.io.Resource; | |
| import javax.servlet.http.HttpServletRequest; |
mdjones
/ gist:127939
Created
June 11, 2009 14:47
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| <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" | |
| "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> | |
| <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en"> | |
| <head><title>ProbeSearch</title> | |
| <meta http-equiv="Content-Type" content="text/html;charset=utf-8" /> | |
| <link rel="stylesheet" href="./include/blueprint/screen.css" type="text/css" media="screen, projection"/> | |
| <link rel="stylesheet" href="./include/blueprint/ie.css" type="text/css" media="screen, projection"/> | |
| <link rel="stylesheet" type="text/css" href="./include/genesearch.css" /> |
mdjones
/ SimplePeptide.py
Last active
March 10, 2018 23:42
SimplePeptide class for matching [IL] isobaric peptides
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| class SimplePeptide: | |
| """ | |
| This allows comparisons between peptide sequences that are nearly identical | |
| except for the Isboaric Isoleucine and Leucine [IL]. MS Proteomics is based on | |
| identifying peptides based on their fragment mass profiles. Since [IL] have the | |
| same mass they can not be differentiated. | |
| The equals is acomplished by a simple replacement of all r'[IL]' in the sequence with | |
| the string [IL]. Then an exact match (No Regex matching needed) is the most efficient | |
| way to match two peptides. |