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mdondrup/tcoffee-7.fa.mixed.IG.nex.con.tre.nex

Created October 24, 2021 17:13
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tcoffee-7.fa.mixed.IG.nex.con.tre.nex
#NEXUS
begin trees;
tree con_50_majrule = [&R] ((((((((((((((((((((((Labidocera_madurae_1[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.166643674,length_median=0.164812,length_95%HPD={0.1180838,0.2164805}]:0.164812,Acartia_tonsa_1-671[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.302123099,length_median=0.3009545,length_95%HPD={0.2401692,0.3654234}]:0.300955)[&prob=0.639240506,prob_stddev=0.0409848701,prob_range={0.610259827,0.668221186},prob(percent)="64",prob+-sd="64+-4",length_mean=0.049391263,length_median=0.04855907,length_95%HPD={0.01660929,0.08581556}]:0.048559,Temora_stylifera_1-5[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.168450561,length_median=0.1679979,length_95%HPD={0.123615,0.2214194}]:0.167998)[&prob=0.943037975,prob_stddev=0.0230834326,prob_range={0.926715523,0.959360426},prob(percent)="94",prob+-sd="94+-2",length_mean=0.0431809188,length_median=0.04136309,length_95%HPD={0.0144212,0.07268075}]:0.041363,Eurytemora_affinis_1[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.188941714,length_median=0.1873319,length_95%HPD={0.1453636,0.2347294}]:0.187332)[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.125717754,length_median=0.1260525,length_95%HPD={0.08964144,0.1658289}]:0.126053,(Pleuromamma_xiphias_[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.0471407453,length_median=0.0459869,length_95%HPD={0.02480904,0.07117174}]:0.045987,Metridia_pacifica_1-[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.050126314,length_median=0.0491575,length_95%HPD={0.028846,0.07488931}]:0.049157)[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.166114061,length_median=0.1656785,length_95%HPD={0.1282393,0.2040072}]:0.165679)[&prob=0.989007328,prob_stddev=4.7109046E-4,prob_range={0.988674217,0.98934044},prob(percent)="99",prob+-sd="99+-0",length_mean=0.0395844875,length_median=0.03925011,length_95%HPD={0.01585695,0.06313575}]:0.03925,(((Calanus_helgolandicu[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.0333101322,length_median=0.03256394,length_95%HPD={0.01959907,0.05181749}]:0.032564,Calanus_fin_GBFB_1-8[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.0295864309,length_median=0.02922381,length_95%HPD={0.01322926,0.04436183}]:0.029224)[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.135255902,length_median=0.1346948,length_95%HPD={0.09641242,0.1705742}]:0.134695,Rhincalanus_gigas_1-[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.229125154,length_median=0.2285066,length_95%HPD={0.1795397,0.2785267}]:0.228507)[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.0736517298,length_median=0.07254815,length_95%HPD={0.04524471,0.1063432}]:0.072548,(Neocalanus_fleminger[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.0584180126,length_median=0.05752817,length_95%HPD={0.03359183,0.08332726}]:0.057528,Calanus_fin_GAXK_1-8[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.0630980245,length_median=0.06266616,length_95%HPD={0.04060979,0.08716844}]:0.062666)[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.171676461,length_median=0.1705329,length_95%HPD={0.1303007,0.2140055}]:0.170533)[&prob=0.991339107,prob_stddev=0.00753744737,prob_range={0.986009327,0.996668887},prob(percent)="99",prob+-sd="99+-1",length_mean=0.0517013955,length_median=0.05126653,length_95%HPD={0.02406974,0.08036858}]:0.051267)[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.218051739,length_median=0.2183938,length_95%HPD={0.1638187,0.2699027}]:0.218394,(((((Tigriopus_japonicus_[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.0267048518,length_median=0.02629714,length_95%HPD={0.01272407,0.04252777}]:0.026297,Tigriopus_californic[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.0268150537,length_median=0.02602706,length_95%HPD={0.01179664,0.04065784}]:0.026027)[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.116675489,length_median=0.1147382,length_95%HPD={0.08013934,0.1495874}]:0.114738,Tigriopus_kingsejong[&prob=1.0,prob_stddev=0.0,prob_range={1.0,1.0},prob(percent)="100",prob+-sd="100+-0",length_mean=0.142995314,length_median=0.1427821,length_95%HPD={0.1021283,0.1807816}]:0.142782)[&prob=1.0,prob_stdde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end;
begin figtree;
set appearance.backgroundColorAttribute="Default";
set appearance.backgroundColour=#ffffff;
set appearance.branchColorAttribute="User selection";
set appearance.branchColorGradient=false;
set appearance.branchLineWidth=2.0;
set appearance.branchMinLineWidth=0.0;
set appearance.branchWidthAttribute="Fixed";
set appearance.foregroundColour=#000000;
set appearance.hilightingGradient=true;
set appearance.selectionColour=#2d3680;
set branchLabels.colorAttribute="User selection";
set branchLabels.displayAttribute="Branch times";
set branchLabels.fontName="sansserif";
set branchLabels.fontSize=8;
set branchLabels.fontStyle=0;
set branchLabels.isShown=false;
set branchLabels.significantDigits=4;
set layout.expansion=376;
set layout.layoutType="RECTILINEAR";
set layout.zoom=0;
set legend.attribute="length_mean";
set legend.fontSize=10.0;
set legend.isShown=false;
set legend.significantDigits=4;
set nodeBars.barWidth=4.0;
set nodeBars.displayAttribute="length_95%HPD";
set nodeBars.isShown=false;
set nodeLabels.colorAttribute="User selection";
set nodeLabels.displayAttribute="prob(percent)";
set nodeLabels.fontName="sansserif";
set nodeLabels.fontSize=8;
set nodeLabels.fontStyle=0;
set nodeLabels.isShown=true;
set nodeLabels.significantDigits=4;
set nodeShapeExternal.colourAttribute="User selection";
set nodeShapeExternal.isShown=false;
set nodeShapeExternal.minSize=10.0;
set nodeShapeExternal.scaleType=Width;
set nodeShapeExternal.shapeType=Circle;
set nodeShapeExternal.size=4.0;
set nodeShapeExternal.sizeAttribute="Fixed";
set nodeShapeInternal.colourAttribute="User selection";
set nodeShapeInternal.isShown=false;
set nodeShapeInternal.minSize=10.0;
set nodeShapeInternal.scaleType=Width;
set nodeShapeInternal.shapeType=Circle;
set nodeShapeInternal.size=4.0;
set nodeShapeInternal.sizeAttribute="Fixed";
set polarLayout.alignTipLabels=false;
set polarLayout.angularRange=0;
set polarLayout.rootAngle=0;
set polarLayout.rootLength=100;
set polarLayout.showRoot=true;
set radialLayout.spread=0.0;
set rectilinearLayout.alignTipLabels=false;
set rectilinearLayout.curvature=0;
set rectilinearLayout.rootLength=100;
set scale.offsetAge=0.0;
set scale.rootAge=1.0;
set scale.scaleFactor=1.0;
set scale.scaleRoot=false;
set scaleAxis.automaticScale=true;
set scaleAxis.fontSize=8.0;
set scaleAxis.isShown=false;
set scaleAxis.lineWidth=1.0;
set scaleAxis.majorTicks=1.0;
set scaleAxis.minorTicks=0.5;
set scaleAxis.origin=0.0;
set scaleAxis.reverseAxis=false;
set scaleAxis.showGrid=true;
set scaleBar.automaticScale=true;
set scaleBar.fontSize=10.0;
set scaleBar.isShown=true;
set scaleBar.lineWidth=1.0;
set scaleBar.scaleRange=0.0;
set tipLabels.colorAttribute="User selection";
set tipLabels.displayAttribute="Names";
set tipLabels.fontName=".AppleSystemUIFont";
set tipLabels.fontSize=12;
set tipLabels.fontStyle=2;
set tipLabels.isShown=true;
set tipLabels.significantDigits=4;
set trees.order=true;
set trees.orderType="increasing";
set trees.rooting=true;
set trees.rootingType="Midpoint";
set trees.transform=false;
set trees.transformType="cladogram";
end;
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