Skip to content

Instantly share code, notes, and snippets.

@mdondrup

mdondrup/mirdeep2-bwa.html

Created October 17, 2016 15:12
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save mdondrup/5e43825d3f751adbcabf191fac6c0dd0 to your computer and use it in GitHub Desktop.
Save mdondrup/5e43825d3f751adbcabf191fac6c0dd0 to your computer and use it in GitHub Desktop.
Download ZIP
Raw
mirdeep2-bwa.html
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN"
"http://www.w3.org/TR/html4/strict.dtd">
<html>
<head>
<title>miRDeep2</title>
<!-- CSS code -->
<style type="text/css">
body{
font: .75em Arial,sans-serif;
background: #FFFFFF;
color: #333333
}
div#
container
{
width: 1000px;
margin:0 auto
}
h1{
color: #F60;
margin: 1em 0 0;
letter-spacing: -2px;
}
p{
margin: 0 0 1.7em;
}
a.tooltip{
text-decoration:none;
color:black;
font-weight:bold;
}
a.tooltip:hover
{ position: relative;
background: transparent;
}
a.tooltip span
{ position: absolute;
visibility: hidden;
width: 20em;
top: 1.5em;
background: #ffffdd;
}
a.tooltip:hover span
{ visibility: visible; }
a.tooltip2{
text-decoration:none;
color:black;
font-weight:bold;
}
a.tooltip2:hover
{ position: relative;
background: transparent;
}
a.tooltip2 span
{ position: absolute;
visibility: hidden;
width: 20em;
top: 1.5em;left:-10em;
background: #ffffdd;
}
a.tooltip2:hover span
{ visibility: visible; }
a.tooltip3{
text-decoration:none;
color:black;
font-weight:bold;
}
a.tooltip3:hover
{ position: relative;
background: transparent;
}
a.tooltip3 span
{ position: absolute;
visibility: hidden;
width: 20em;
top: 3em;
background: #ffffdd;
}
a.tooltip3:hover span
{ visibility: visible; }
a.tooltip4{
text-decoration:none;
color:black;
font-weight:bold;
}
a.tooltip4:hover
{ position: relative;
background: transparent;
}
a.tooltip4 span
{ position: absolute;
visibility: hidden;
width: 20em;
top:3em;left:-10em;
background: #ffffdd;
}
a.tooltip4:hover span
{ visibility: visible; }
</style>
</head>
<body>
<table border="0" width="100%">
<colgroup>
<col width="5*">
<col width="5*">
</colgroup>
<tr height="200" valign="top">
<td><font face="Times New Roman" size="8">
<b><a href="http://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html" target="_blank" style="color:Black;text-decoration:none" title="miRDeep2 homepage at MDC-Berlin" >miRDeep2</a></b>
<br>
<br>
</font></td>
<td> <a href="http://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html" target="_blank" >
<img src="http://www.mdc-berlin.de/de/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/mirdeep.jpg" style="border-style: none" name="precursor miRNA" title="miRDeep2 homepage at MDC-Berlin" align=right alt="miRDeep home"/></a></td>
</tr>
</table>
<h2>Parameters used</h2>
<table border="0">
<tr><td>miRDeep2 version</td><td>2.0.0.8</td></tr><br>
<tr><td>Program call</td><td>/Home/ii/phongphakk/mirdeep2_0_0_8/bin/miRDeep2.pl SRR019717.fa ../../../genome/Drosophila_melanogaster.BDGP6.dna.toplevel.fa SRR019717_vs_genome.arf ../../../data/mature_miRNAs_dmel.fa ../../../data/mature_miRNAs_dsim.fa ../../../data/precursors_miRNAs_dmel.fa -t d.melanogaster</td><tr>
<tr><td>Reads</td><td>SRR019717.fa</td></tr>
<tr><td>Genome</td><td>../../../genome/Drosophila_melanogaster.BDGP6.dna.toplevel.fa</td></tr>
<tr><td>Mappings</td><td>SRR019717_vs_genome.arf</td></tr>
<tr><td>Reference mature miRNAs</td><td>../../../data/mature_miRNAs_dmel.fa</td></tr>
<tr><td>Other mature miRNAs</td><td>../../../data/mature_miRNAs_dsim.fa</td></tr>
<tr><td>Species</td><td>d.melanogaster</td></tr>
</table><br><br>
<font face="Times New Roman" size="4">
<b>Survey of miRDeep2 performance for score cut-offs -10 to 10</b>
<font face="Times New Roman" size="3">
<table border="1" >
<tr><th></th><TH colspan="3">novel miRNAs</th><th colspan="3">known miRBase miRNAs</th><th></th><th></th></tr>
<th><a href="http://www.nature.com/nbt/journal/v26/n4/abs/nbt1394.html" target="blank" class="tooltip">miRDeep2 score<span>for details on how the log-odds score is calculated, see Friedlander et al., Nature Biotechnology, 2008.</span></a></th></a>
<th><a href="#" class="tooltip">predicted by miRDeep2<span>novel miRNA hairpins are here defined by not having any of the reference mature miRNAs mapping perfectly (full length, no mismatches). The numbers show how many novel miRNA hairpins have a score equal to or exceeding the cut-off.</span></a></th>
<th><a href="#" class="tooltip">estimated false positives<span>number of false positive miRNA hairpins predicted at this cut-off, as estimated by the miRDeep2 controls (see Friedlander et al., Nature Biotechnology, 2008). Mean and standard deviation is estimated from 100 rounds of permuted controls.</span></a></th>
<th><a href="#" class="tooltip">estimated true positives<span>the number of true positive miRNA hairpins is estimated as t = total novel miRNAs - false positive novel miRNAs. The percentage of the predicted novel miRNAs that is estimated to be true positives is calculated as p = t / total novel miRNAs. The number of false positives is estimated from 100 rounds of permuted controls. In each of the 100 rounds, t and p are calculated, generating mean and standard deviation of t and p. The variable p can be used as an estimation of miRDeep2 positive predictive value at the score cut-off. </span></a></th>
<th><a href="#" class="tooltip">in species<span>number of reference mature miRNAs for that species given as input to miRDeep2.</span></a></th>
<th><a href="#" class="tooltip">in data<span>number of reference mature miRNAs for that species that map perfectly (full length, no mismatches) to one or more of precursor candidates that have been excised from the genome by miRDeep2.</span></a></th>
<th><a href="#" class="tooltip">detected by miRDeep2<span>number of reference mature miRNAs for that species that map perfectly (full length, no mismatches) to one or more of predicted miRNA hairpins that have a score equal to or exceeding the cut-off. The percentage of reference mature miRNAs in data that is detected by miRDeep2 is calculated as s = reference mature miRNAs detected / reference mature miRNAs in data. s can be used as an estimation of miRDeep2 sensitivity at the score cut-off.</span></a></th>
<th><a href="#" class="tooltip">estimated signal-to-noise<span>for the given score cut-off, the signal-to-noise ratio is estimated as r = total miRNA hairpins reported / mean estimated false positive miRNA hairpins over 100 rounds of permuted controls.</span></a></th>
<th><a href="#" class="tooltip2">excision gearing<span>this is the minimum read stack height required for excising a potential miRNA precursor from the genome in this analysis.</span></a></th>
<tr><td>10<td>23<td>5 &#177 2<td>18 &#177 2 (76 &#177 11%)<td>438<td>135<td>93 (69%)<td>13<td>6
</td></tr>
<tr><td>9<td>23<td>5 &#177 2<td>18 &#177 2 (76 &#177 11%)<td>438<td>135<td>95 (70%)<td>13.2<td>6
</td></tr>
<tr><td>8<td>23<td>5 &#177 2<td>18 &#177 2 (76 &#177 11%)<td>438<td>135<td>95 (70%)<td>13.2<td>6
</td></tr>
<tr><td>7<td>23<td>6 &#177 2<td>17 &#177 2 (76 &#177 11%)<td>438<td>135<td>95 (70%)<td>13.1<td>6
</td></tr>
<tr><td>6<td>23<td>6 &#177 2<td>17 &#177 2 (76 &#177 11%)<td>438<td>135<td>96 (71%)<td>13.3<td>6
</td></tr>
<tr><td>5<td>23<td>6 &#177 2<td>17 &#177 2 (76 &#177 11%)<td>438<td>135<td>102 (76%)<td>13.6<td>6
</td></tr>
<tr><td>4<td>23<td>6 &#177 2<td>17 &#177 2 (76 &#177 11%)<td>438<td>135<td>115 (85%)<td>14.8<td>6
</td></tr>
<tr><td>3<td>23<td>6 &#177 2<td>17 &#177 2 (74 &#177 11%)<td>438<td>135<td>117 (87%)<td>14<td>6
</td></tr>
<tr><td>2<td>23<td>6 &#177 2<td>17 &#177 2 (73 &#177 11%)<td>438<td>135<td>117 (87%)<td>13.6<td>6
</td></tr>
<tr><td>1<td>25<td>6 &#177 2<td>19 &#177 2 (74 &#177 10%)<td>438<td>135<td>121 (90%)<td>13<td>6
</td></tr>
<tr><td>0<td>33<td>8 &#177 3<td>25 &#177 3 (75 &#177 9%)<td>438<td>135<td>123 (91%)<td>10.6<td>6
</td></tr>
<tr bgcolor=silver><td>-1<td>36<td>18 &#177 4<td>18 &#177 4 (51 &#177 12%)<td>438<td>135<td>124 (92%)<td>5.3<td>6
</td></tr>
<tr bgcolor=silver><td>-2<td>39<td>27 &#177 5<td>12 &#177 5 (32 &#177 13%)<td>438<td>135<td>124 (92%)<td>3.7<td>6
</td></tr>
<tr bgcolor=silver><td>-3<td>42<td>36 &#177 5<td>7 &#177 5 (16 &#177 11%)<td>438<td>135<td>126 (93%)<td>2.9<td>6
</td></tr>
<tr bgcolor=silver><td>-4<td>48<td>44 &#177 6<td>5 &#177 4 (10 &#177 9%)<td>438<td>135<td>126 (93%)<td>2.5<td>6
</td></tr>
<tr bgcolor=silver><td>-5<td>59<td>51 &#177 7<td>9 &#177 6 (15 &#177 10%)<td>438<td>135<td>127 (94%)<td>2.4<td>6
</td></tr>
<tr bgcolor=silver><td>-6<td>61<td>57 &#177 7<td>6 &#177 6 (9 &#177 9%)<td>438<td>135<td>127 (94%)<td>2.2<td>6
</td></tr>
<tr bgcolor=silver><td>-7<td>62<td>61 &#177 7<td>3 &#177 5 (6 &#177 7%)<td>438<td>135<td>127 (94%)<td>2<td>6
</td></tr>
<tr bgcolor=silver><td>-8<td>65<td>66 &#177 8<td>3 &#177 4 (4 &#177 6%)<td>438<td>135<td>127 (94%)<td>1.9<td>6
</td></tr>
<tr bgcolor=silver><td>-9<td>71<td>69 &#177 8<td>4 &#177 5 (6 &#177 7%)<td>438<td>135<td>127 (94%)<td>1.9<td>6
</td></tr>
<tr bgcolor=silver><td>-10<td>74<td>72 &#177 8<td>4 &#177 5 (6 &#177 7%)<td>438<td>135<td>127 (94%)<td>1.9<td>6
</td></tr>
</table><br><br>
<br>
<br>
<br><h2>novel miRNAs predicted by miRDeep2</h2><br>
<font face="Times New Roman" size="2">
<table border="1">
<th><a href="" class="tooltip3">provisional id<span>this is a provisional miRNA name assigned by miRDeep2. The first part of the id designates the chromosome or genome contig on which the miRNA gene is located. The second part is a running number that is added to avoid identical ids. The running number is incremented by one for each potential miRNA precursor that is excised from the genome. Clicking this field will display a pdf of the structure, read signature and score breakdown of the reported miRNA.</span></a></th>
<th><a href="" class="tooltip3">miRDeep2 score<span>the log-odds score assigned to the hairpin by miRDeep2</span></a></th>
<th><a href="" class="tooltip3">estimated probability that the miRNA candidate is a true positive<span>the estimated probability that a predicted novel miRNA with a score of this or higher is a true positive. To see exactly how this probability is estimated, mouse over the 'novel miRNAs, true positives' in the table at the top of the webpage.</span></a></th>
<th><a href="" class="tooltip3">rfam alert<span>this field indicates if the predicted miRNA hairpin has sequence similarity to reference rRNAs or tRNAs. Warnings in this field should overrule the estimated probability that a reported miRNA is a true positive (previous field).</span></a></th>
<th><a href="" class="tooltip3">total read count<span>this is the sum of read counts for the predicted mature, loop and star miRNAs.</span></a></th>
<th><a href="" class="tooltip3">mature read count<span>this is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted mature miRNA, including 2 nts upstream and 5 nts downstream.</span></a></th>
<th><a href="" class="tooltip3">loop read count<span>this is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted miRNA loop, including 2 nts upstream and 5 nts downstream.</span></a></th>
<th><a href="" class="tooltip3">star read count<span>this is the number of reads that map to the predicted miRNA hairpin and are contained in the sequence covered by the predicted star miRNA, including 2 nts upstream and 5 nts downstream.</span></a></th>
<th><a href="http://www.ncbi.nlm.nih.gov/entrez/utils/fref.fcgi?PrId=3051&itool=AbstractPlus-def&uid=15217813&nlmid=9808944&db=pubmed&url=http://bioinformatics.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15217813" target="blank"class="tooltip3">significant randfold p-value<span>this field indicates if the estimated randfold p-value of the excised potential miRNA hairpin is equal to or lower than 0.05 (see Bonnet et al., Bioinformatics, 2004).</span></a></th>
<th><a href="" class="tooltip3">miRBase miRNA<span>this field displays the ids of any reference mature miRNAs for the species that map perfectly (full length, no mismatches) to the reported miRNA hairpin. If this is the case, the reported miRNA hairpin is assigned as a known miRNA. If not, it is assigned as a novel miRNA. If more than one reference mature miRNA maps to the miRNA hairpin, then only the id of the reference miRBase miRNA that matches the predicted mature sequence is output.</span></a></th>
<th><a href="" class="tooltip3">example miRBase miRNA with the same seed<span>this field displays the ids of any reference mature miRNAs from related species that have a seed sequence identical to that of the reported mature miRNA. The seed is here defined as nucleotides 2-8 from the 5' end of the mature miRNA. If more than one reference mature miRNA have identical seed, then only the id of the miRNA that occurs last in the input file of reference mature miRNAs from related species is displayed.</span></a></th>
<th><a href="" class="tooltip3">UCSC browser<span>if a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the consensus precursor sequence against the reference genome.</span></a></th>
<th><a href="" class="tooltip3">NCBI blastn<span>clicking this field will initiate a NCBI blastn search of the consensus precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences).</span></a></th>
<th><a href="" class="tooltip3">consensus mature sequence<span>this is the consensus mature miRNA sequence as inferred from the deep sequencing reads.</span></a></th>
<th><a href="" class="tooltip3">consensus star sequence<span>this is the consensus star miRNA sequence as inferred from the deep sequencing reads.</span></a></th>
<th><a href="" class="tooltip4">consensus precursor sequence<span>this is the consensus precursor miRNA sequence as inferred from the deep sequencing reads. Note that this is the inferred Drosha hairpin product, and therefore does not include substantial flanking genomic sequence as does most miRBase precursors.</span></a></th>
<th><a href="" class="tooltip3">precursor coordinate<span>The given precursor coordinates refer do absolute position in the mapped reference sequence</span></a></th>
<tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35385.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35385</a></td>
<td nowrap="nowrap">1.1e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>22985</td>
<td>17286</td>
<td>5691</td>
<td>8</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uagcgccccgguagccuguaguuugacuccaacaaguucgcuccuggcgcuucacaggcgcugga&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35385&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggcgcuucacaggcgcugga</td>
<td>uagcgccccgguagccuguagu</td>
<td>uagcgccccgguagccuguaguuugacuccaacaaguucgcuccuggcgcuucacaggcgcugga</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4927202..4927267:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35373.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35373</a></td>
<td nowrap="nowrap">9.1e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>17951</td>
<td>17286</td>
<td>617</td>
<td>48</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucaagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35373&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggcgcuucacaggcgcugga</td>
<td>cagcgucagucaagcggaagg</td>
<td>uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucaagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4926058..4926143:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35381.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35381</a></td>
<td nowrap="nowrap">9.1e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>17951</td>
<td>17286</td>
<td>617</td>
<td>48</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucaagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35381&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggcgcuucacaggcgcugga</td>
<td>cagcgucagucaagcggaagg</td>
<td>uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucaagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4926868..4926953:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35365.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35365</a></td>
<td nowrap="nowrap">9.1e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>17904</td>
<td>17286</td>
<td>617</td>
<td>1</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35365&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggcgcuucacaggcgcugga</td>
<td>cagcgucagucgagcggaagg</td>
<td>uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4925248..4925333:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35375.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35375</a></td>
<td nowrap="nowrap">9.1e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>17904</td>
<td>17286</td>
<td>617</td>
<td>1</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35375&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggcgcuucacaggcgcugga</td>
<td>cagcgucagucgagcggaagg</td>
<td>uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4926328..4926413:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35371.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35371</a></td>
<td nowrap="nowrap">9.1e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>17904</td>
<td>17286</td>
<td>617</td>
<td>1</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35371&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggcgcuucacaggcgcugga</td>
<td>cagcgucagucgagcggaagg</td>
<td>uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4925788..4925873:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35379.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35379</a></td>
<td nowrap="nowrap">9.1e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>17904</td>
<td>17286</td>
<td>617</td>
<td>1</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35379&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggcgcuucacaggcgcugga</td>
<td>cagcgucagucgagcggaagg</td>
<td>uggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucagucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4926598..4926683:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35345.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35345</a></td>
<td nowrap="nowrap">6.8e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>13353</td>
<td>7723</td>
<td>5595</td>
<td>35</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uagcgcccugguagccuguaguuugacuccaacaaguucgcucccggcgcuucacaggcgcugg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35345&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cggcgcuucacaggcgcugg</td>
<td>uagcgcccugguagccuguagu</td>
<td>uagcgcccugguagccuguaguuugacuccaacaaguucgcucccggcgcuucacaggcgcugg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4922792..4922856:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35344.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35344</a></td>
<td nowrap="nowrap">4.3e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>8513</td>
<td>7723</td>
<td>622</td>
<td>168</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35344&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cggcgcuucacaggcgcugg</td>
<td>cagcgucugucgagcggaagg</td>
<td>cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4922727..4922812:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35357.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35357</a></td>
<td nowrap="nowrap">4.3e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>8513</td>
<td>7723</td>
<td>622</td>
<td>168</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35357&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cggcgcuucacaggcgcugg</td>
<td>cagcgucugucgagcggaagg</td>
<td>cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4924116..4924201:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35363.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35363</a></td>
<td nowrap="nowrap">4.3e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>8513</td>
<td>7723</td>
<td>622</td>
<td>168</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35363&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cggcgcuucacaggcgcugg</td>
<td>cagcgucugucgagcggaagg</td>
<td>cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4924965..4925050:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35351.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35351</a></td>
<td nowrap="nowrap">4.3e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>8513</td>
<td>7723</td>
<td>622</td>
<td>168</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35351&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cggcgcuucacaggcgcugg</td>
<td>cagcgucugucgagcggaagg</td>
<td>cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4923267..4923352:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35335.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35335</a></td>
<td nowrap="nowrap">4.3e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>8513</td>
<td>7723</td>
<td>622</td>
<td>168</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35335&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cggcgcuucacaggcgcugg</td>
<td>cagcgucugucgagcggaagg</td>
<td>cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4921878..4921963:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35361.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35361</a></td>
<td nowrap="nowrap">4.3e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>8513</td>
<td>7723</td>
<td>622</td>
<td>168</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35361&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cggcgcuucacaggcgcugg</td>
<td>cagcgucugucgagcggaagg</td>
<td>cggcgcuucacaggcgcuggaaaaucuuaaccgccggaagucacuuccgcuggcuuugauuuuccagcgucugucgagcggaagg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4924682..4924767:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/211000022279132_dna:scaffold_scaffold:BDGP6:211000022279132:1:1005:1_REF_46295.pdf">211000022279132_dna:scaffold_scaffold:BDGP6:211000022279132:1:1005:1_REF_46295</a></td>
<td nowrap="nowrap">2.7e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>5317</td>
<td>5258</td>
<td>5</td>
<td>54</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuugaacgcauaucgcaguccaugcuguuauguacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg&JOB_TITLE=211000022279132_dna:scaffold_scaffold:BDGP6:211000022279132:1:1005:1_REF_46295&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugcuuggacuacauaugguugaggg</td>
<td>uuugaacgcauaucgcaguccaugc</td>
<td>uuugaacgcauaucgcaguccaugcuguuauguacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg</td>
<td>211000022279132_dna:scaffold_scaffold:BDGP6:211000022279132:1:1005:1_REF:278..358:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/rDNA_dna:scaffold_scaffold:BDGP6:rDNA:1:76973:1_REF_41419.pdf">rDNA_dna:scaffold_scaffold:BDGP6:rDNA:1:76973:1_REF_41419</a></td>
<td nowrap="nowrap">2.7e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>5317</td>
<td>5258</td>
<td>5</td>
<td>54</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuugaacgcauaucgcaguccaugcuguuauguacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg&JOB_TITLE=rDNA_dna:scaffold_scaffold:BDGP6:rDNA:1:76973:1_REF_41419&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugcuuggacuacauaugguugaggg</td>
<td>uuugaacgcauaucgcaguccaugc</td>
<td>uuugaacgcauaucgcaguccaugcuguuauguacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg</td>
<td>rDNA_dna:scaffold_scaffold:BDGP6:rDNA:1:76973:1_REF:70484..70564:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_37426.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_37426</a></td>
<td nowrap="nowrap">2.7e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>5317</td>
<td>5258</td>
<td>5</td>
<td>54</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuugaacgcauaucgcaguccaugcuguuauguacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_37426&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugcuuggacuacauaugguugaggg</td>
<td>uuugaacgcauaucgcaguccaugc</td>
<td>uuugaacgcauaucgcaguccaugcuguuauguacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:23538008..23538088:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/rDNA_dna:scaffold_scaffold:BDGP6:rDNA:1:76973:1_REF_41325.pdf">rDNA_dna:scaffold_scaffold:BDGP6:rDNA:1:76973:1_REF_41325</a></td>
<td nowrap="nowrap">2.7e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>5317</td>
<td>5258</td>
<td>5</td>
<td>54</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuugaacgcauaucgcaguccaugcuguuauguacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg&JOB_TITLE=rDNA_dna:scaffold_scaffold:BDGP6:rDNA:1:76973:1_REF_41325&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugcuuggacuacauaugguugaggg</td>
<td>uuugaacgcauaucgcaguccaugc</td>
<td>uuugaacgcauaucgcaguccaugcuguuauguacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg</td>
<td>rDNA_dna:scaffold_scaffold:BDGP6:rDNA:1:76973:1_REF:46300..46380:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/211000022278869_dna:scaffold_scaffold:BDGP6:211000022278869:1:2381:1_REF_44859.pdf">211000022278869_dna:scaffold_scaffold:BDGP6:211000022278869:1:2381:1_REF_44859</a></td>
<td nowrap="nowrap">2.7e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>5315</td>
<td>5258</td>
<td>4</td>
<td>53</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuugaacgcauaucgcaguccaugcuguuaugaacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg&JOB_TITLE=211000022278869_dna:scaffold_scaffold:BDGP6:211000022278869:1:2381:1_REF_44859&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugcuuggacuacauaugguugaggg</td>
<td>uuugaacgcauaucgcaguccaugc</td>
<td>uuugaacgcauaucgcaguccaugcuguuaugaacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg</td>
<td>211000022278869_dna:scaffold_scaffold:BDGP6:211000022278869:1:2381:1_REF:815..895:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/211000022280312_dna:scaffold_scaffold:BDGP6:211000022280312:1:1116:1_REF_45887.pdf">211000022280312_dna:scaffold_scaffold:BDGP6:211000022280312:1:1116:1_REF_45887</a></td>
<td nowrap="nowrap">2.7e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>5315</td>
<td>5258</td>
<td>5</td>
<td>52</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuugaacgcauaucgcaguccaugcuguuauuuacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg&JOB_TITLE=211000022280312_dna:scaffold_scaffold:BDGP6:211000022280312:1:1116:1_REF_45887&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugcuuggacuacauaugguugaggg</td>
<td>uuugaacgcauaucgcaguccaugc</td>
<td>uuugaacgcauaucgcaguccaugcuguuauuuacuuuaauuaauuuuauagugcugcuuggacuacauaugguugaggg</td>
<td>211000022280312_dna:scaffold_scaffold:BDGP6:211000022280312:1:1116:1_REF:785..865:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7456.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7456</a></td>
<td nowrap="nowrap">4.9e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>1006</td>
<td>1003</td>
<td>0</td>
<td>3</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuauaugauguuacuucuaguauaguucauuagaaacacacauguuacaaa&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7456&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uuauaugauguuacuucuagu</td>
<td>auuagaaacacacauguuacaaa</td>
<td>uuauaugauguuacuucuaguauaguucauuagaaacacacauguuacaaa</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:14623277..14623328:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_34512.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_34512</a></td>
<td nowrap="nowrap">2.0e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>470</td>
<td>445</td>
<td>17</td>
<td>8</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucucuuauuaaugauucggaaauagaaaagucuugguuauguuauuauucuucguugguucguuaaaaauggaua&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_34512&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucucuuauuaaugauucggaaauag</td>
<td>uucguugguucguuaaaaauggaua</td>
<td>ucucuuauuaaugauucggaaauagaaaagucuugguuauguuauuauucuucguugguucguuaaaaauggaua</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:23214280..23214355:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_8497.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_8497</a></td>
<td nowrap="nowrap">2.6e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>58</td>
<td>56</td>
<td>0</td>
<td>2</td>
<td>no</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gccaagucuucgguuggaggcagcggacuuagcagagcgcuuagucggcgccucgugccgucuggagu&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_8497&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>gccaagucuucgguuggaggcagcg</td>
<td>gccucgugccgucuggagu</td>
<td>gccaagucuucgguuggaggcagcggacuuagcagagcgcuuagucggcgccucgugccgucuggagu</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:454485..454553:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35527.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35527</a></td>
<td nowrap="nowrap">1.4</td>
<td>0.74 &#177 0.10</td>
<td></td>
<td>38</td>
<td>37</td>
<td>1</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=augggcacaguuuuaaacuaggugguuauccuccauggaagaucaccgaucgaaagcugugcccaaag&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35527&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>augggcacaguuuuaaacu</td>
<td>ucgaaagcugugcccaaag</td>
<td>augggcacaguuuuaaacuaggugguuauccuccauggaagaucaccgaucgaaagcugugcccaaag</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:6742423..6742491:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22545.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22545</a></td>
<td nowrap="nowrap">1.1</td>
<td>0.74 &#177 0.10</td>
<td></td>
<td>33</td>
<td>33</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cagauaauuacaggcggcguguccacccuucaauaaucgagggaugcagucguuuuccuuuaaucugag&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_22545&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugcagucguuuuccuuuaaucugag</td>
<td>cagauaauuacaggcggcgugucca</td>
<td>cagauaauuacaggcggcguguccacccuucaauaaucgagggaugcagucguuuuccuuuaaucugag</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:3409766..3409835:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23537.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23537</a></td>
<td nowrap="nowrap">0.8</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>83</td>
<td>83</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ccacuauaagagugacauucaugacggggauguagcucagaugguagagc&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23537&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ggggauguagcucagaugguagagc</td>
<td>ccacuauaagagugacauucauga</td>
<td>ccacuauaagagugacauucaugacggggauguagcucagaugguagagc</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:17668161..17668211:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_915.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_915</a></td>
<td nowrap="nowrap">0.6</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>6371</td>
<td>6227</td>
<td>142</td>
<td>2</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_915&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aaacugauuuuuggaaucagac</td>
<td>aucuguucuuaucagcuuaac</td>
<td>aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:13215876..13215955:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2950.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2950</a></td>
<td nowrap="nowrap">0.5</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>6371</td>
<td>6227</td>
<td>142</td>
<td>2</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2950&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aaacugauuuuuggaaucagac</td>
<td>aucuguucuuaucagcuuaac</td>
<td>aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:13244444..13244523:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_10930.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_10930</a></td>
<td nowrap="nowrap">0.3</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>117</td>
<td>117</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uccacuccuuuucugcuuuuugggugcguuuuucuccugucuugcccguuacucagcuauugugagugggcg&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_10930&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uacucagcuauugugagugggcg</td>
<td>uccacuccuuuucugcuuuuu</td>
<td>uccacuccuuuucugcuuuuugggugcguuuuucuccugucuugcccguuacucagcuauugugagugggcg</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:4345399..4345471:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3430.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3430</a></td>
<td nowrap="nowrap">0.2</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>6371</td>
<td>6227</td>
<td>142</td>
<td>2</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3430&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aaacugauuuuuggaaucagac</td>
<td>aucuguucuuaucagcuuaac</td>
<td>aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:19815688..19815767:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2948.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2948</a></td>
<td nowrap="nowrap">0.2</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>6371</td>
<td>6227</td>
<td>142</td>
<td>2</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2948&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aaacugauuuuuggaaucagac</td>
<td>aucuguucuuaucagcuuaac</td>
<td>aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:13211999..13212078:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29943.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29943</a></td>
<td nowrap="nowrap">0.2</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>6371</td>
<td>6227</td>
<td>142</td>
<td>2</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29943&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aaacugauuuuuggaaucagac</td>
<td>aucuguucuuaucagcuuaac</td>
<td>aucuguucuuaucagcuuaacaucugauaguuccuccauuggaggacaacaaauguuaaacugauuuuuggaaucagac</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:16254709..16254788:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/Y_dna:chromosome_chromosome:BDGP6:Y:1:3667352:1_REF_39330.pdf">Y_dna:chromosome_chromosome:BDGP6:Y:1:3667352:1_REF_39330</a></td>
<td nowrap="nowrap">0</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>82</td>
<td>81</td>
<td>1</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=guuugaugucgaagguuagaaguuaaggggguuauuaaguggguuguuaauaaaugcauaauaauccccucuuugauuauucggaaugaaacgc&JOB_TITLE=Y_dna:chromosome_chromosome:BDGP6:Y:1:3667352:1_REF_39330&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucuuugauuauucggaaugaaacgc</td>
<td>guuugaugucgaagguuagaaguuaagg</td>
<td>guuugaugucgaagguuagaaguuaaggggguuauuaaguggguuguuaauaaaugcauaauaauccccucuuugauuauucggaaugaaacgc</td>
<td>Y_dna:chromosome_chromosome:BDGP6:Y:1:3667352:1_REF:270944..271038:-</td>
</tr></table></font>
<br>
<br>
<br><h2>mature miRBase miRNAs detected by miRDeep2</h2><br>
<font face="Times New Roman" size="2">
<table border="1">
<th><a href="" class="tooltip3">tag id<span>this is a tag id assigned by miRDeep2. The first part of the id designates the chromosome or genome contig on which the miRNA gene is located. The second part is a running number that is added to avoid identical ids. The running number is incremented by one for each potential miRNA precursor that is excised from the genome. Clicking this field will display a pdf of the structure, read signature and score breakdown of the miRNA.</span></a></th>
<th><a href="" class="tooltip3">miRDeep2 score<span>the log-odds score assigned to the hairpin by miRDeep2</span></a></th>
<th><a href="" class="tooltip3">estimated probability that the miRNA is a true positive<span>the estimated probability that a predicted miRNA with a score of this or higher is a true positive. To see exactly how this probability is estimated, mouse over the 'novel miRNAs, true positives' in the table at the top of the webpage. For miRBase miRNAs, this reflects the support that the data at hand lends to the miRNA.</span></a></th>
<th><a href="" class="tooltip3">rfam alert<span>this field indicates if the miRNA hairpin has sequence similarity to reference rRNAs or tRNAs. Warnings in this field should overrule the estimated probability that a reported miRNA is a true positive (previous field).</span></a></th>
<th><a href="" class="tooltip3">predicted mature seq. in accordance with miRBase mature seq.<span>If the predicted miRDeep2 sequence overlaps with the miRBase annotated mature sequence than this is indicated by 'TRUE'. If the predicted miRDeep2 star sequence overlaps with the miRBase annotated mature sequence this is inidicated by 'STAR'.</span></a></th>
<th><a href="" class="tooltip3">total read count<span>this is the sum of read counts for the mature, loop and star miRNAs.</span></a></th>
<th><a href="" class="tooltip3">mature read count<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the consensus mature miRNA, including 2 nts upstream and 5 nts downstream.</span></a></th>
<th><a href="" class="tooltip3">loop read count<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the consensus miRNA loop, including 2 nts upstream and 5 nts downstream.</span></a></th>
<th><a href="" class="tooltip3">star read count<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the consensus star miRNA, including 2 nts upstream and 5 nts downstream.</span></a></th>
<th><a href="http://www.ncbi.nlm.nih.gov/entrez/utils/fref.fcgi?PrId=3051&itool=AbstractPlus-def&uid=15217813&nlmid=9808944&db=pubmed&url=http://bioinformatics.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15217813" target="blank"class="tooltip3">significant randfold p-value<span>this field indicates if the estimated randfold p-value of the miRNA hairpin is equal to or lower than 0.05 (see Bonnet et al., Bioinformatics, 2004).</span></a></th>
<th><a href="" class="tooltip3">mature miRBase miRNA<span>this field displays the ids of any reference mature miRNAs for the species that map perfectly (full length, no mismatches) to the reported miRNA hairpin. If this is the case, the reported miRNA hairpin is assigned as a known miRNA. If not, it is assigned as a novel miRNA. If more than one reference mature miRNA maps to the miRNA hairpin, then only the id of the reference miRBase miRNA that matches the predicted mature sequence is output.</span></a></th>
<th><a href="" class="tooltip3">example miRBase miRNA with the same seed<span>this field displays the ids of any reference mature miRNAs from related species that have a seed sequence identical to that of the reported mature miRNA. The seed is here defined as nucleotides 2-8 from the 5' end of the mature miRNA. If more than one reference mature miRNA have identical seed, then only the id of the miRNA that occurs last in the input file of reference mature miRNAs from related species is displayed.</span></a></th>
<th><a href="" class="tooltip3">UCSC browser<span>if a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the consensus precursor sequence against the reference genome.</span></a></th>
<th><a href="" class="tooltip3">NCBI blastn<span>clicking this field will initiate a NCBI blastn search of the consensus precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences).</span></a></th>
<th><a href="" class="tooltip3">consensus mature sequence<span>this is the consensus mature miRNA sequence as inferred from the deep sequencing reads.</span></a></th>
<th><a href="" class="tooltip3">consensus star sequence<span>this is the consensus star miRNA sequence as inferred from the deep sequencing reads.</span></a></th>
<th><a href="" class="tooltip4">consensus precursor sequence<span>this is the consensus precursor miRNA sequence as inferred from the deep sequencing reads. Note that this is the inferred Drosha hairpin product, and therefore does not include substantial flanking genomic sequence as does most miRBase precursors.</span></a></th>
<th><a href="" class="tooltip3">precursor coordinate<span>The given precursor coordinates refer do absolute position in the mapped reference sequence</span></a></th>
<tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23935.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23935</a></td>
<td nowrap="nowrap">6.6e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>130378</td>
<td>129687</td>
<td>9</td>
<td>682</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-996-5p_MIMAT0020895" target="_blank"> dme-miR-996-5p_MIMAT0020895</a></td>
<td nowrap="nowrap">dsi-miR-279_MIMAT0008896</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ggcgaacauggaucuagugcacggugguucaugauuaaguucgugacuagauuucaugcucgucu&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23935&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugacuagauuucaugcucgucu</td>
<td>ggcgaacauggaucuagugca</td>
<td>ggcgaacauggaucuagugcacggugguucaugauuaaguucgugacuagauuucaugcucgucu</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:29217200..29217265:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11828.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11828</a></td>
<td nowrap="nowrap">5.8e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>115330</td>
<td>115082</td>
<td>1</td>
<td>247</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-308-5p_MIMAT0020833" target="_blank"> dme-miR-308-5p_MIMAT0020833</a></td>
<td nowrap="nowrap">dsi-miR-13a_MIMAT0008881</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cgcaguauauuuuuguguuuuguuucguuuugcaauccaaaucacaggauuauacugugag&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11828&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aaucacaggauuauacugugag</td>
<td>cgcaguauauuuuuguguuuu</td>
<td>cgcaguauauuuuuguguuuuguuucguuuugcaauccaaaucacaggauuauacugugag</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:14215801..14215862:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1056.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1056</a></td>
<td nowrap="nowrap">3.7e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>73768</td>
<td>73296</td>
<td>0</td>
<td>472</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-306-5p_MIMAT0000393" target="_blank"> dme-miR-306-5p_MIMAT0000393</a></td>
<td nowrap="nowrap">dsi-miR-275_MIMAT0008880</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucagguacuuagugacucucaaugcuuuugacauuuugggggucacucugugccugugc&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1056&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucagguacuuagugacucuca</td>
<td>gggggucacucugugccugugc</td>
<td>ucagguacuuagugacucucaaugcuuuugacauuuugggggucacucugugccugugc</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16698417..16698476:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7183.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7183</a></td>
<td nowrap="nowrap">3.0e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>59708</td>
<td>59552</td>
<td>0</td>
<td>156</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-14-5p_MIMAT0020798" target="_blank"> dme-miR-14-5p_MIMAT0020798</a></td>
<td nowrap="nowrap">dsi-miR-14_MIMAT0008848</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gggagcgagacggggacucacugugcuuauuaaauagucagucuuuuucucucuccuau&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7183&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucagucuuuuucucucuccuau</td>
<td>gggagcgagacggggacucacu</td>
<td>gggagcgagacggggacucacugugcuuauuaaauagucagucuuuuucucucuccuau</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:9553764..9553823:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1057.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1057</a></td>
<td nowrap="nowrap">2.9e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>57671</td>
<td>57617</td>
<td>4</td>
<td>50</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-79-5p_MIMAT0020814" target="_blank"> dme-miR-79-5p_MIMAT0020814</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gcuuuggcgcuuuagcuguaugauagauuuaaacuacuucauaaagcuagauuaccaaagcau&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1057&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaaagcuagauuaccaaagcau</td>
<td>gcuuuggcgcuuuagcuguauga</td>
<td>gcuuuggcgcuuuagcuguaugauagauuuaaacuacuucauaaagcuagauuaccaaagcau</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16698571..16698634:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_510.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_510</a></td>
<td nowrap="nowrap">2.1e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>42604</td>
<td>39428</td>
<td>0</td>
<td>3176</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-305-5p_MIMAT0000391" target="_blank"> dme-miR-305-5p_MIMAT0000391</a></td>
<td nowrap="nowrap">dsi-miR-305_MIMAT0008860</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=auuguacuucaucaggugcucuggugugucucguaacccggcacauguugaaguacacuca&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_510&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>auuguacuucaucaggugcucu</td>
<td>cggcacauguugaaguacacuca</td>
<td>auuguacuucaucaggugcucuggugugucucguaacccggcacauguugaaguacacuca</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:7425978..7426039:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12646.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12646</a></td>
<td nowrap="nowrap">1.9e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>37840</td>
<td>28069</td>
<td>8</td>
<td>9763</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-282-5p_MIMAT0000346" target="_blank"> dme-miR-282-5p_MIMAT0000346</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uagccucuacuaggcuuugucugugcauucgaaagccgaucagacauagccuauaagagguuagg&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12646&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uagccucuacuaggcuuugucu</td>
<td>acauagccuauaagagguuagg</td>
<td>uagccucuacuaggcuuugucugugcauucgaaagccgaucagacauagccuauaagagguuagg</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:3251037..3251102:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12459.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12459</a></td>
<td nowrap="nowrap">1.4e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>29185</td>
<td>28469</td>
<td>0</td>
<td>716</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-bantam-5p_MIMAT0020823" target="_blank"> dme-bantam-5p_MIMAT0020823</a></td>
<td nowrap="nowrap">dsi-bantam_MIMAT0008861</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ccgguuuucgauuugguuugacuguuuuucauacaagugagaucauuuugaaagcugauu&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12459&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugagaucauuuugaaagcugauu</td>
<td>ccgguuuucgauuugguuugacu</td>
<td>ccgguuuucgauuugguuugacuguuuuucauacaagugagaucauuuugaaagcugauu</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:642221..642281:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3408.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3408</a></td>
<td nowrap="nowrap">1.4e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>28138</td>
<td>26448</td>
<td>6</td>
<td>1684</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-2a-2-5p_MIMAT0020781" target="_blank"> dme-miR-2a-2-5p_MIMAT0020781</a></td>
<td nowrap="nowrap">dsi-miR-13a_MIMAT0008881</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ccucaucaagugguugugauauggauacccaacgcauaucacagccagcuuugaugagcu&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3408&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaucacagccagcuuugaugagcu</td>
<td>ccucaucaagugguugugaua</td>
<td>ccucaucaagugguugugauauggauacccaacgcauaucacagccagcuuugaugagcu</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:19569494..19569554:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_13606.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_13606</a></td>
<td nowrap="nowrap">1.3e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>27178</td>
<td>26533</td>
<td>18</td>
<td>627</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-33-5p_MIMAT0000342" target="_blank"> dme-miR-33-5p_MIMAT0000342</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gugcauuguagucgcauugucugucccaauugcuucaggcaauacaacuucagugcaagcu&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_13606&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>gugcauuguagucgcauuguc</td>
<td>caauacaacuucagugcaagcu</td>
<td>gugcauuguagucgcauugucugucccaauugcuucaggcaauacaacuucagugcaagcu</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:19797985..19798046:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1053.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1053</a></td>
<td nowrap="nowrap">1.3e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>26477</td>
<td>15783</td>
<td>17</td>
<td>10677</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-9c-5p_MIMAT0000392" target="_blank"> dme-miR-9c-5p_MIMAT0000392</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucuuugguauucuagcuguagauuguuucacgcacauuguauaucaucuaaagcuuuuauaccaaagcuc&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1053&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaaagcuuuuauaccaaagcuc</td>
<td>ucuuugguauucuagcuguaga</td>
<td>ucuuugguauucuagcuguagauuguuucacgcacauuguauaucaucuaaagcuuuuauaccaaagcuc</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16697935..16698005:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3410.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3410</a></td>
<td nowrap="nowrap">1.3e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>25494</td>
<td>25414</td>
<td>11</td>
<td>69</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-2a-1-5p_MIMAT0020780" target="_blank"> dme-miR-2a-1-5p_MIMAT0020780</a></td>
<td nowrap="nowrap">dsi-miR-13a_MIMAT0008881</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cucucaaagugguugugaaaugcauuuccgcuuugcgcggcauaucacagccagcuuugaugagcu&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3410&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaucacagccagcuuugaugagcu</td>
<td>cucucaaagugguugugaaau</td>
<td>cucucaaagugguugugaaaugcauuuccgcuuugcgcggcauaucacagccagcuuugaugagcu</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:19569900..19569966:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23771.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23771</a></td>
<td nowrap="nowrap">1.1e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>22965</td>
<td>21906</td>
<td>12</td>
<td>1047</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-92a-5p_MIMAT0020802" target="_blank"> dme-miR-92a-5p_MIMAT0020802</a></td>
<td nowrap="nowrap">dsi-miR-92a_MIMAT0008898</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aggacgggaaggugucaacguuuugcauuucgaauaaacauugcacuugucccggccuau&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23771&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cauugcacuugucccggccuau</td>
<td>aggacgggaaggugucaacguu</td>
<td>aggacgggaaggugucaacguuuugcauuucgaauaaacauugcacuugucccggccuau</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:25646521..25646581:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23773.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23773</a></td>
<td nowrap="nowrap">1.1e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>22202</td>
<td>21996</td>
<td>50</td>
<td>156</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-92b-5p_MIMAT0020819" target="_blank"> dme-miR-92b-5p_MIMAT0020819</a></td>
<td nowrap="nowrap">dsi-miR-92a_MIMAT0008898</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aggccgugcccagugcuuauuuguugcauuuucgaaauacaaauugcacuagucccggccugc&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23773&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aauugcacuagucccggccugc</td>
<td>aggccgugcccagugcuuauuug</td>
<td>aggccgugcccagugcuuauuuguugcauuuucgaaauacaaauugcacuagucccggccugc</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:25651415..25651478:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_507.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_507</a></td>
<td nowrap="nowrap">1.0e+4
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>20871</td>
<td>20740</td>
<td>0</td>
<td>131</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-275-5p_MIMAT0020801" target="_blank"> dme-miR-275-5p_MIMAT0020801</a></td>
<td nowrap="nowrap">dsi-miR-275_MIMAT0008880</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cgcgcuaaucagugaccggggcugguuuuuuauauacagucagguaccugaaguagcgcgcg&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_507&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucagguaccugaaguagcgcgcg</td>
<td>cgcgcuaaucagugaccggggc</td>
<td>cgcgcuaaucagugaccggggcugguuuuuuauauacagucagguaccugaaguagcgcgcg</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:7425813..7425875:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29367.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29367</a></td>
<td nowrap="nowrap">8.0e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>15831</td>
<td>15601</td>
<td>0</td>
<td>230</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-13b-2-5p_MIMAT0020797" target="_blank"> dme-miR-13b-2-5p_MIMAT0020797</a></td>
<td nowrap="nowrap">dsi-miR-13a_MIMAT0008881</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gcgucaaaaugacugugagcuauguggauuugacuucauaucacagccauuuugacgaguu&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29367&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaucacagccauuuugacgaguu</td>
<td>gcgucaaaaugacugugagcuau</td>
<td>gcgucaaaaugacugugagcuauguggauuugacuucauaucacagccauuuugacgaguu</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:9091236..9091297:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_26992.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_26992</a></td>
<td nowrap="nowrap">7.9e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>15602</td>
<td>15601</td>
<td>0</td>
<td>1</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-13b-1-5p_MIMAT0020796" target="_blank"> dme-miR-13b-1-5p_MIMAT0020796</a></td>
<td nowrap="nowrap">dsi-miR-13a_MIMAT0008881</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucguuaaaauguuugugaacuuauguauucacaaucauaucacagccauuuugacgaguu&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_26992&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaucacagccauuuugacgaguu</td>
<td>ucguuaaaauguuugugaa</td>
<td>ucguuaaaauguuugugaacuuauguauucacaaucauaucacagccauuuugacgaguu</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:15417410..15417470:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11824.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11824</a></td>
<td nowrap="nowrap">7.9e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>15585</td>
<td>15579</td>
<td>0</td>
<td>6</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-989-3p_MIMAT0005506" target="_blank"> dme-miR-989-3p_MIMAT0005506</a></td>
<td nowrap="nowrap">dsi-miR-989_MIMAT0012497</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuucauuuugcgucuuuugaauucgaauaguucaugugaugugacguaguggaac&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11824&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugugaugugacguaguggaac</td>
<td>uuucauuuugcgucuuuuga</td>
<td>uuucauuuugcgucuuuugaauucgaauaguucaugugaugugacguaguggaac</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:14145365..14145420:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1060.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1060</a></td>
<td nowrap="nowrap">7.8e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>15380</td>
<td>13876</td>
<td>1</td>
<td>1503</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-9b-5p_MIMAT0000395" target="_blank"> dme-miR-9b-5p_MIMAT0000395</a></td>
<td nowrap="nowrap">dsi-miR-9a_MIMAT0008843</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucuuuggugauuuuagcuguaugguguuuauguauauuccauagagcuuuauuaccaaaaacc&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1060&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucuuuggugauuuuagcuguau</td>
<td>uagagcuuuauuaccaaaaacc</td>
<td>ucuuuggugauuuuagcuguaugguguuuauguauauuccauagagcuuuauuaccaaaaacc</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16698757..16698820:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_27316.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_27316</a></td>
<td nowrap="nowrap">6.3e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>12379</td>
<td>12343</td>
<td>0</td>
<td>36</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-11-5p_MIMAT0020793" target="_blank"> dme-miR-11-5p_MIMAT0020793</a></td>
<td nowrap="nowrap">dsi-miR-13a_MIMAT0008881</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=caagaacuuucucugugacccgcguguacuuaaaagccgcaucacagucugaguucuugcu&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_27316&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>caucacagucugaguucuugcu</td>
<td>caagaacuuucucugugacccg</td>
<td>caagaacuuucucugugacccgcguguacuuaaaagccgcaucacagucugaguucuugcu</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:21622502..21622563:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11784.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11784</a></td>
<td nowrap="nowrap">5.6e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>10986</td>
<td>10913</td>
<td>0</td>
<td>73</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-184-5p_MIMAT0000330" target="_blank"> dme-miR-184-5p_MIMAT0000330</a></td>
<td nowrap="nowrap">dsi-miR-184-3p_MIMAT0008904</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ccuuaucauucucucgccccgugugcacuuaaagacaacuggacggagaacugauaagggc&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11784&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggacggagaacugauaagggc</td>
<td>ccuuaucauucucucgccccgu</td>
<td>ccuuaucauucucucgccccgugugcacuuaaagacaacuggacggagaacugauaagggc</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:13329419..13329480:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23065.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23065</a></td>
<td nowrap="nowrap">4.9e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>9697</td>
<td>4000</td>
<td>238</td>
<td>5459</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-34-5p_MIMAT0000350" target="_blank"> dme-miR-34-5p_MIMAT0000350</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uggcagugugguuagcugguuguguagccaauuauugccguugacaauucacagccacuaucuucacugccgcc&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23065&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cagccacuaucuucacugccgcc</td>
<td>uggcagugugguuagcugguu</td>
<td>uggcagugugguuagcugguuguguagccaauuauugccguugacaauucacagccacuaucuucacugccgcc</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:10100951..10101025:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12991.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12991</a></td>
<td nowrap="nowrap">4.5e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>8886</td>
<td>7767</td>
<td>0</td>
<td>1119</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-276a-5p_MIMAT0000336" target="_blank"> dme-miR-276a-5p_MIMAT0000336</a></td>
<td nowrap="nowrap">dsi-miR-276b_MIMAT0008895</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=agcgagguauagaguuccuacguucauuauaaacucguaggaacuucauaccgugcucu&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12991&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaggaacuucauaccgugcucu</td>
<td>agcgagguauagaguuccuacg</td>
<td>agcgagguauagaguuccuacguucauuauaaacucguaggaacuucauaccgugcucu</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:10365243..10365302:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7541.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7541</a></td>
<td nowrap="nowrap">4.5e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>8870</td>
<td>8512</td>
<td>0</td>
<td>358</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-278-5p_MIMAT0020805" target="_blank"> dme-miR-278-5p_MIMAT0020805</a></td>
<td nowrap="nowrap">dsi-miR-278_MIMAT0008891</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ccggaugaugguucacaacgaccgugucauuuaaacgggucggugggacuuucguccguuu&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7541&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucggugggacuuucguccguuu</td>
<td>ccggaugaugguucacaacgacc</td>
<td>ccggaugaugguucacaacgaccgugucauuuaaacgggucggugggacuuucguccguuu</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:15657082..15657143:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23061.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23061</a></td>
<td nowrap="nowrap">4.5e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>8851</td>
<td>8568</td>
<td>280</td>
<td>3</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-317-5p_MIMAT0020843" target="_blank"> dme-miR-317-5p_MIMAT0020843</a></td>
<td nowrap="nowrap">dsi-miR-317_MIMAT0008863</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gggauacacccugugcucgcuuugaaugaaaugcaagcaagugaacacagcuggugguaucc&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23061&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugaacacagcuggugguaucc</td>
<td>gggauacacccugugcucgcu</td>
<td>gggauacacccugugcucgcuuugaaugaaaugcaagcaagugaacacagcuggugguaucc</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:10091139..10091201:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29904.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29904</a></td>
<td nowrap="nowrap">4.1e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>8204</td>
<td>8095</td>
<td>8</td>
<td>101</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-304-5p_MIMAT0000390" target="_blank"> dme-miR-304-5p_MIMAT0000390</a></td>
<td nowrap="nowrap">dsi-miR-304_MIMAT0008882</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uaaucucaauuuguaaaugugagcgguuuaagccauuugacgcacucacuuugcaauuggagauugcu&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29904&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaaucucaauuuguaaaugugag</td>
<td>cacuuugcaauuggagauugcu</td>
<td>uaaucucaauuuguaaaugugagcgguuuaagccauuugacgcacucacuuugcaauuggagauugcu</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:15508969..15509037:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23605.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23605</a></td>
<td nowrap="nowrap">3.3e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>6531</td>
<td>6451</td>
<td>0</td>
<td>80</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-995-3p_MIMAT0005514" target="_blank"> dme-miR-995-3p_MIMAT0005514</a></td>
<td nowrap="nowrap">dsi-miR-285_MIMAT0008888</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gcccgaauuaugugggagcugcgccguuuccguaauccguagcaccacaugauucggcuu&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23605&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uagcaccacaugauucggcuu</td>
<td>gcccgaauuaugugggagcugcg</td>
<td>gcccgaauuaugugggagcugcgccguuuccguaauccguagcaccacaugauucggcuu</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:20735937..20735997:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2186.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2186</a></td>
<td nowrap="nowrap">3.3e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>6471</td>
<td>6358</td>
<td>8</td>
<td>105</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-965-5p_MIMAT0020861" target="_blank"> dme-miR-965-5p_MIMAT0020861</a></td>
<td nowrap="nowrap">dsi-miR-965-3p_MIMAT0012472</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gggguaaaacuguacguuauaugugcccuucugugauauucauaagcguauagcuuuuccccuu&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2186&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaagcguauagcuuuuccccuu</td>
<td>gggguaaaacuguacguuauau</td>
<td>gggguaaaacuguacguuauaugugcccuucugugauauucauaagcguauagcuuuuccccuu</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:243054..243118:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29906.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29906</a></td>
<td nowrap="nowrap">1.6e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>3130</td>
<td>3018</td>
<td>5</td>
<td>107</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-12-5p_MIMAT0000117" target="_blank"> dme-miR-12-5p_MIMAT0000117</a></td>
<td nowrap="nowrap">dsi-miR-960_MIMAT0012495</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ugaguauuacaucagguacuggugugccuuaaauccaacaaccaguacuuaugucauacuacgc&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29906&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugaguauuacaucagguacuggu</td>
<td>caguacuuaugucauacuacgc</td>
<td>ugaguauuacaucagguacuggugugccuuaaauccaacaaccaguacuuaugucauacuacgc</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:15509478..15509542:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23063.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23063</a></td>
<td nowrap="nowrap">1.4e+3
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>2813</td>
<td>2564</td>
<td>4</td>
<td>245</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-277-5p_MIMAT0020804" target="_blank"> dme-miR-277-5p_MIMAT0020804</a></td>
<td nowrap="nowrap">dsi-miR-277_MIMAT0008850</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cgugucaggagugcauuugcacugaaacuaucugaagcauguaaaugcacuaucugguacgaca&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23063&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaaaugcacuaucugguacgaca</td>
<td>cgugucaggagugcauuugca</td>
<td>cgugucaggagugcauuugcacugaaacuaucugaagcauguaaaugcacuaucugguacgaca</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:10100038..10100102:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11750.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11750</a></td>
<td nowrap="nowrap">9.1e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>1798</td>
<td>1602</td>
<td>0</td>
<td>196</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-988-5p_MIMAT0020886" target="_blank"> dme-miR-988-5p_MIMAT0020886</a></td>
<td nowrap="nowrap">dsi-miR-988-3p_MIMAT0012436</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gugugauuuguagcaaagugauauguauuugaucauccccuuguugcaaaccucacg&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11750&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ccccuuguugcaaaccucacg</td>
<td>gugugauuuguagcaaagugau</td>
<td>gugugauuuguagcaaagugauauguauuugaucauccccuuguugcaaaccucacg</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:12158888..12158945:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12868.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12868</a></td>
<td nowrap="nowrap">8.8e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>1732</td>
<td>1469</td>
<td>1</td>
<td>262</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-190-5p_MIMAT0005467" target="_blank"> dme-miR-190-5p_MIMAT0005467</a></td>
<td nowrap="nowrap">dsi-miR-190-5p_MIMAT0012449</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=agauauguuugauauucuugguuguuucauucaaaaguucacccaggaaucaaacauauuauu&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12868&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>agauauguuugauauucuugguug</td>
<td>cccaggaaucaaacauauuauu</td>
<td>agauauguuugauauucuugguuguuucauucaaaaguucacccaggaaucaaacauauuauu</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:8571821..8571884:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29731.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29731</a></td>
<td nowrap="nowrap">8.5e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>1663</td>
<td>1661</td>
<td>1</td>
<td>1</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-970-5p_MIMAT0020867" target="_blank"> dme-miR-970-5p_MIMAT0020867</a></td>
<td nowrap="nowrap">dsi-miR-970-3p_MIMAT0012488</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=agcuagcggguguuuuauuugguagcuguaaugauuugaaucuaucauaagacacacgcggcuau&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29731&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucauaagacacacgcggcuau</td>
<td>agcuagcggguguuuuauu</td>
<td>agcuagcggguguuuuauuugguagcuguaaugauuugaaucuaucauaagacacacgcggcuau</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:12636351..12636416:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29902.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29902</a></td>
<td nowrap="nowrap">8.4e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>1662</td>
<td>1609</td>
<td>3</td>
<td>50</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-283-3p_MIMAT0020810" target="_blank"> dme-miR-283-3p_MIMAT0020810</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aaauaucagcugguaauucugggagcuaagccuaaauaugaaacacucggaauuucaguugguaucgac&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_29902&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aaauaucagcugguaauucuggg</td>
<td>cggaauuucaguugguaucgac</td>
<td>aaauaucagcugguaauucugggagcuaagccuaaauaugaaacacucggaauuucaguugguaucgac</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:15507975..15508044:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12990.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12990</a></td>
<td nowrap="nowrap">5.7e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>1129</td>
<td>1119</td>
<td>0</td>
<td>10</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-276a-5p_MIMAT0000336" target="_blank"> dme-miR-276a-5p_MIMAT0000336</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=agcgagguauagaguuccuacguuccuauauucagucguaggaacuuaauaccgugcucu&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_12990&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>agcgagguauagaguuccuacg</td>
<td>uaggaacuuaauaccgugcucu</td>
<td>agcgagguauagaguuccuacguuccuauauucagucguaggaacuuaauaccgugcucu</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:10319807..10319867:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23749.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23749</a></td>
<td nowrap="nowrap">5.4e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>1066</td>
<td>1065</td>
<td>0</td>
<td>1</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-1003-5p_MIMAT0020902" target="_blank"> dme-miR-1003-5p_MIMAT0020902</a></td>
<td nowrap="nowrap">dsi-miR-1003-3p_MIMAT0012428</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=guggguaucuggaugugguuggcucuggcgguccucucacauuuacauauucacag&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23749&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucucacauuuacauauucacag</td>
<td>guggguaucuggaugugguugg</td>
<td>guggguaucuggaugugguuggcucuggcgguccucucacauuuacauauucacag</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:24658604..24658660:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_27318.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_27318</a></td>
<td nowrap="nowrap">4.6e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>911</td>
<td>905</td>
<td>0</td>
<td>6</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-999-5p_MIMAT0020899" target="_blank"> dme-miR-999-5p_MIMAT0020899</a></td>
<td nowrap="nowrap">dsi-miR-999-3p_MIMAT0012456</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=acauagucauacggugaauguuguguauuggagaccaauguuaacuguaagacugugucu&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_27318&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uguuaacuguaagacugugucu</td>
<td>acauagucauacggugaauguu</td>
<td>acauagucauacggugaauguuguguauuggagaccaauguuaacuguaagacugugucu</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:21798248..21798308:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7788.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7788</a></td>
<td nowrap="nowrap">4.0e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>777</td>
<td>727</td>
<td>5</td>
<td>45</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-7-5p_MIMAT0000112" target="_blank"> dme-miR-7-5p_MIMAT0000112</a></td>
<td nowrap="nowrap">dsi-miR-7_MIMAT0008901</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uggaagacuagugauuuuguuguuuggucuuugguaauaacaauaaaucccuugucuucuuac&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7788&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggaagacuagugauuuuguuguu</td>
<td>aauaaaucccuugucuucuuac</td>
<td>uggaagacuagugauuuuguuguuuggucuuugguaauaacaauaaaucccuugucuucuuac</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:20606080..20606143:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1557.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1557</a></td>
<td nowrap="nowrap">1.8e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>364</td>
<td>356</td>
<td>0</td>
<td>8</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-1-5p_MIMAT0020779" target="_blank"> dme-miR-1-5p_MIMAT0020779</a></td>
<td nowrap="nowrap">dsi-miR-1_MIMAT0008867</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ccaugcuuccuugcauucaauaguuauauucaagcauauggaauguaaagaaguauggag&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1557&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uggaauguaaagaaguauggag</td>
<td>ccaugcuuccuugcauucaau</td>
<td>ccaugcuuccuugcauucaauaguuauauucaagcauauggaauguaaagaaguauggag</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:20487457..20487517:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1076.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1076</a></td>
<td nowrap="nowrap">1.3e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>259</td>
<td>255</td>
<td>0</td>
<td>4</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-let-7-5p_MIMAT0000396" target="_blank"> dme-let-7-5p_MIMAT0000396</a></td>
<td nowrap="nowrap">dsi-let-7_MIMAT0008876</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ugagguaguagguuguauaguaguaauuacacaucauacuauacaaugugcuagcuuucu&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1076&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugagguaguagguuguauagu</td>
<td>cuauacaaugugcuagcuuucu</td>
<td>ugagguaguagguuguauaguaguaauuacacaucauacuauacaaugugcuagcuuucu</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:18472043..18472103:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11756.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11756</a></td>
<td nowrap="nowrap">1.1e+2
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>225</td>
<td>128</td>
<td>0</td>
<td>97</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-281-2-5p_MIMAT0000349" target="_blank"> dme-miR-281-2-5p_MIMAT0000349</a></td>
<td nowrap="nowrap">dsi-miR-281-3p_MIMAT0008906</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aagagagcuauccgucgacagucaaguuaagaccgauuguaauacugucauggaauugcucucuuugu&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11756&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugucauggaauugcucucuuugu</td>
<td>aagagagcuauccgucgacaguc</td>
<td>aagagagcuauccgucgacagucaaguuaagaccgauuguaauacugucauggaauugcucucuuugu</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:12170162..12170230:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11758.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11758</a></td>
<td nowrap="nowrap">7.5e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>140</td>
<td>128</td>
<td>0</td>
<td>12</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-281-1-5p_MIMAT0000344" target="_blank"> dme-miR-281-1-5p_MIMAT0000344</a></td>
<td nowrap="nowrap">dsi-miR-281-3p_MIMAT0008906</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aaagagagcuguccgucgacaguccagaaacuauuuaauaucacugucauggaauugcucucuuugu&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11758&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugucauggaauugcucucuuugu</td>
<td>aaagagagcuguccgucgaca</td>
<td>aaagagagcuguccgucgacaguccagaaacuauuuaauaucacugucauggaauugcucucuuugu</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:12170382..12170449:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1078.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1078</a></td>
<td nowrap="nowrap">6.4e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>131</td>
<td>129</td>
<td>0</td>
<td>2</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-125-5p_MIMAT0000397" target="_blank"> dme-miR-125-5p_MIMAT0000397</a></td>
<td nowrap="nowrap">dsi-miR-125_MIMAT0008846</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucccugagacccuaacuugugacuuuuaauaccaguuucacaaguuuugaucuccgguau&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1078&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucccugagacccuaacuuguga</td>
<td>acaaguuuugaucuccgguau</td>
<td>ucccugagacccuaacuugugacuuuuaauaccaguuucacaaguuuugaucuccgguau</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:18472342..18472402:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7583.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7583</a></td>
<td nowrap="nowrap">5.6e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>104</td>
<td>101</td>
<td>0</td>
<td>3</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-8-5p_MIMAT0020791" target="_blank"> dme-miR-8-5p_MIMAT0020791</a></td>
<td nowrap="nowrap">dsi-miR-8_MIMAT0008889</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=caucuuaccgggcagcauuagauccuuuuuauaacucuaauacugucagguaaagauguc&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7583&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaauacugucagguaaagauguc</td>
<td>caucuuaccgggcagcauuaga</td>
<td>caucuuaccgggcagcauuagauccuuuuuauaacucuaauacugucagguaaagauguc</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:16831446..16831506:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_26994.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_26994</a></td>
<td nowrap="nowrap">4.7e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>86</td>
<td>84</td>
<td>0</td>
<td>2</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-13a-5p_MIMAT0020795" target="_blank"> dme-miR-13a-5p_MIMAT0020795</a></td>
<td nowrap="nowrap">dsi-miR-13a_MIMAT0008881</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cuccucaaaggguugugaaaugucgacuauuaucuacucauaucacagccauuuugaugaguu&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_26994&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaucacagccauuuugaugaguu</td>
<td>cuccucaaaggguugugaaau</td>
<td>cuccucaaaggguugugaaaugucgacuauuaucuacucauaucacagccauuuugaugaguu</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:15417546..15417609:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23144.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23144</a></td>
<td nowrap="nowrap">4.7e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>93</td>
<td>79</td>
<td>0</td>
<td>14</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-994-5p_MIMAT0005513" target="_blank"> dme-miR-994-5p_MIMAT0005513</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cuaaggaaauaguagccgugauuuuacccaagaauuuuucacauaucacaguugcuguuucuuuuaga&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23144&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cuaaggaaauaguagccgugau</td>
<td>cacaguugcuguuucuuuuaga</td>
<td>cuaaggaaauaguagccgugauuuuacccaagaauuuuucacauaucacaguugcuguuucuuuuaga</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:10408147..10408215:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35323.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35323</a></td>
<td nowrap="nowrap">4.4e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>89</td>
<td>75</td>
<td>0</td>
<td>14</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-983-5p_MIMAT0005499" target="_blank"> dme-miR-983-5p_MIMAT0005499</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=auaauacguuucgaacuaaugauuuucaguucauucauuagguaguuacgcauuaucu&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35323&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>auaauacguuucgaacuaauga</td>
<td>auuagguaguuacgcauuaucu</td>
<td>auaauacguuucgaacuaaugauuuucaguucauucauuagguaguuacgcauuaucu</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4368503..4368561:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35321.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35321</a></td>
<td nowrap="nowrap">4.2e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>89</td>
<td>75</td>
<td>0</td>
<td>14</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-983-5p_MIMAT0005499" target="_blank"> dme-miR-983-5p_MIMAT0005499</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=auaauacguuucgaacuaaugauuuucaguucauucauuagguaguuacgcauuaucu&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35321&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>auaauacguuucgaacuaauga</td>
<td>auuagguaguuacgcauuaucu</td>
<td>auaauacguuucgaacuaaugauuuucaguucauucauuagguaguuacgcauuaucu</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4368324..4368382:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1074.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1074</a></td>
<td nowrap="nowrap">3.0e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>55</td>
<td>54</td>
<td>0</td>
<td>1</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-100-5p_MIMAT0000357" target="_blank"> dme-miR-100-5p_MIMAT0000357</a></td>
<td nowrap="nowrap">dsi-miR-100_MIMAT0008872</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aacccguaaauccgaacuugugcuguuuuauaucuguuacaagaccggcauuaugggaguc&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1074&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aacccguaaauccgaacuugug</td>
<td>caagaccggcauuaugggaguc</td>
<td>aacccguaaauccgaacuugugcuguuuuauaucuguuacaagaccggcauuaugggaguc</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:18471444..18471505:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_426.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_426</a></td>
<td nowrap="nowrap">2.1e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>33</td>
<td>30</td>
<td>0</td>
<td>3</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-932-5p_MIMAT0005479" target="_blank"> dme-miR-932-5p_MIMAT0005479</a></td>
<td nowrap="nowrap">dsi-miR-932-5p_MIMAT0012477</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucaauuccguagugcauugcaguguguuucauuauuuacugcaagcgcugcggauuuggc&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_426&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucaauuccguagugcauugcagu</td>
<td>ugcaagcgcugcggauuuggc</td>
<td>ucaauuccguagugcauugcaguguguuucauuauuuacugcaagcgcugcggauuuggc</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:6902076..6902136:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36235.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36235</a></td>
<td nowrap="nowrap">1.8e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>29</td>
<td>27</td>
<td>0</td>
<td>2</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-927-5p_MIMAT0005501" target="_blank"> dme-miR-927-5p_MIMAT0005501</a></td>
<td nowrap="nowrap">dsi-miR-927-5p_MIMAT0012483</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuuagaauuccuacgcuuuaccguggcauacgaaauucggcaaagcguuuggauucugaaac&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36235&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uuuagaauuccuacgcuuuacc</td>
<td>caaagcguuuggauucugaaac</td>
<td>uuuagaauuccuacgcuuuaccguggcauacgaaauucggcaaagcguuuggauucugaaac</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:15965961..15966023:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_13516.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_13516</a></td>
<td nowrap="nowrap">1.3e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>18</td>
<td>10</td>
<td>0</td>
<td>8</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-315-5p_MIMAT0000407" target="_blank"> dme-miR-315-5p_MIMAT0000407</a></td>
<td nowrap="nowrap">dsi-miR-315_MIMAT0008870</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuuugauuguugcucagaaagcccucauuguuuaccaguuggcuuucgagcaauaauugaaacc&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_13516&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uuuugauuguugcucagaaagcc</td>
<td>cuuucgagcaauaauugaaacc</td>
<td>uuuugauuguugcucagaaagcccucauuguuuaccaguuggcuuucgagcaauaauugaaacc</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:18860981..18861045:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35317.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35317</a></td>
<td nowrap="nowrap">1.1e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>27</td>
<td>23</td>
<td>0</td>
<td>4</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-982-3p_MIMAT0020879" target="_blank"> dme-miR-982-3p_MIMAT0020879</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uccuggacaaauaugaaguaaauuguuuuuaugcaucaauuacuugauauucauccuuga&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35317&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uccuggacaaauaugaaguaaau</td>
<td>uuacuugauauucauccuuga</td>
<td>uccuggacaaauaugaaguaaauuguuuuuaugcaucaauuacuugauauucauccuuga</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4365823..4365883:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_400.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_400</a></td>
<td nowrap="nowrap">1.0e+1
</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>14</td>
<td>13</td>
<td>0</td>
<td>1</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-964-5p_MIMAT0005478" target="_blank"> dme-miR-964-5p_MIMAT0005478</a></td>
<td nowrap="nowrap">dsi-miR-964-5p_MIMAT0012475</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uuagaauaggggagcuuaacuuauguuuuugauguuuaaguuaaaagccucuguucuaa&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_400&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uuagaauaggggagcuuaacuu</td>
<td>uuaaaagccucuguucuaa</td>
<td>uuagaauaggggagcuuaacuuauguuuuugauguuuaaguuaaaagccucuguucuaa</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:5642126..5642185:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35319.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35319</a></td>
<td nowrap="nowrap">9.7</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>19</td>
<td>16</td>
<td>0</td>
<td>3</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-303-5p_MIMAT0000388" target="_blank"> dme-miR-303-5p_MIMAT0000388</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uagguuucacaggaaacugguuuaauaacgaaaacuaguuuccucuaaaauccuaa&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_35319&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uagguuucacaggaaacugguu</td>
<td>cuaguuuccucuaaaauccuaa</td>
<td>uagguuucacaggaaacugguuuaauaacgaaaacuaguuuccucuaaaauccuaa</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:4366184..4366240:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_14001.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_14001</a></td>
<td nowrap="nowrap">6.9</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>12</td>
<td>9</td>
<td>0</td>
<td>3</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-9388-5p_MIMAT0035238" target="_blank"> dme-miR-9388-5p_MIMAT0035238</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=guauguauguauguacauacauguguauaugguacauucauguaguacauacauacauaugu&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_14001&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uguaguacauacauacauaugu</td>
<td>guauguauguauguacauacau</td>
<td>guauguauguauguacauacauguguauaugguacauucauguaguacauacauacauaugu</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:22945130..22945192:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3412.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3412</a></td>
<td nowrap="nowrap">5.2</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>19700</td>
<td>19216</td>
<td>4</td>
<td>480</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-2b-2-5p_MIMAT0020783" target="_blank"> dme-miR-2b-2-5p_MIMAT0020783</a></td>
<td nowrap="nowrap">dsi-miR-13a_MIMAT0008881</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uucuucaaagugguugugaaauguuugccuuuuuaugccuauucauaucacagccagcuuugaggag&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3412&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaucacagccagcuuugaggag</td>
<td>uucuucaaagugguugug</td>
<td>uucuucaaagugguugugaaauguuugccuuuuuaugccuauucauaucacagccagcuuugaggag</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:19570189..19570256:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30015.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30015</a></td>
<td nowrap="nowrap">5.1</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>13</td>
<td>13</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-210-5p_MIMAT0020816" target="_blank"> dme-miR-210-5p_MIMAT0020816</a></td>
<td nowrap="nowrap">dsi-miR-210_MIMAT0008849</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=agcugcuggccacugcacaagauuagacuuaagacucuugugcgugugacagcggcuau&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_30015&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uugugcgugugacagcggcuau</td>
<td>agcugcuggccacugcacaaga</td>
<td>agcugcuggccacugcacaagauuagacuuaagacucuugugcgugugacagcggcuau</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:18128233..18128292:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23713.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23713</a></td>
<td nowrap="nowrap">5.0</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>578</td>
<td>565</td>
<td>0</td>
<td>13</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-1010-5p_MIMAT0020905" target="_blank"> dme-miR-1010-5p_MIMAT0020905</a></td>
<td nowrap="nowrap">dsi-miR-1010-3p_MIMAT0012464</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=guaagugguguagaugaaacaaauuuaccaacaauuuuguuggauuguuucaccuaucguuccauuugcagc&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23713&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uuucaccuaucguuccauuugcagc</td>
<td>guaagugguguagaugaaaca</td>
<td>guaagugguguagaugaaacaaauuuaccaacaauuuuguuggauuguuucaccuaucguuccauuugcagc</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:22292878..22292950:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23933.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23933</a></td>
<td nowrap="nowrap">4.8</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>69862</td>
<td>69795</td>
<td>7</td>
<td>60</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-279-5p_MIMAT0020807" target="_blank"> dme-miR-279-5p_MIMAT0020807</a></td>
<td nowrap="nowrap">dsi-miR-279_MIMAT0008896</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aguggguggggguccaguguuucacauugauuuucuuaguauuugugacuagauccacacucauu&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23933&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugacuagauccacacucauu</td>
<td>aguggguggggguccaguguuu</td>
<td>aguggguggggguccaguguuucacauugauuuucuuaguauuugugacuagauccacacucauu</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:29215605..29215670:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1559.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1559</a></td>
<td nowrap="nowrap">4.8</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>21</td>
<td>21</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-133-5p_MIMAT0020806" target="_blank"> dme-miR-133-5p_MIMAT0020806</a></td>
<td nowrap="nowrap">dsi-miR-133_MIMAT0008900</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=agcugguugacaucgggucagaucuguuuuucaagcauuugguccccuucaaccagcugu&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1559&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uugguccccuucaaccagcugu</td>
<td>agcugguugacaucgggucagau</td>
<td>agcugguugacaucgggucagaucuguuuuucaagcauuugguccccuucaaccagcugu</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:20616634..20616694:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_17648.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_17648</a></td>
<td nowrap="nowrap">4.7</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>58</td>
<td>56</td>
<td>2</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-285-5p_MIMAT0020817" target="_blank"> dme-miR-285-5p_MIMAT0020817</a></td>
<td nowrap="nowrap">dsi-miR-285_MIMAT0008888</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aacugagaucgauuggugcauagauaucaggagaacccacucaauuuaacucuagcaccauucgaaaucagugcu&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_17648&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uagcaccauucgaaaucagugcu</td>
<td>aacugagaucgauuggugcauaga</td>
<td>aacugagaucgauuggugcauagauaucaggagaacccacucaauuuaacucuagcaccauucgaaaucagugcu</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:11946105..11946180:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_398.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_398</a></td>
<td nowrap="nowrap">4.6</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>26</td>
<td>15</td>
<td>0</td>
<td>11</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-960-5p_MIMAT0005474" target="_blank"> dme-miR-960-5p_MIMAT0005474</a></td>
<td nowrap="nowrap">dsi-miR-960_MIMAT0012495</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ugaguauuccagauugcauagcuuugugcuacuauugcuauacggucugggacacuuuuaaca&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_398&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugaguauuccagauugcauagc</td>
<td>uacggucugggacacuuuuaaca</td>
<td>ugaguauuccagauugcauagcuuugugcuacuauugcuauacggucugggacacuuuuaaca</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:5641080..5641143:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7132.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7132</a></td>
<td nowrap="nowrap">4.6</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>131</td>
<td>131</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-986-5p_MIMAT0005503" target="_blank"> dme-miR-986-5p_MIMAT0005503</a></td>
<td nowrap="nowrap">dsi-miR-986-5p_MIMAT0012431</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ucucgaauagcguugugacugagguaacugcgcaucgaaucuacucagcggcgaggcuauucaaguaa&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7132&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucucgaauagcguugugacuga</td>
<td>agcggcgaggcuauucaaguaa</td>
<td>ucucgaauagcguugugacugagguaacugcgcaucgaaucuacucagcggcgaggcuauucaaguaa</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:8444999..8445067:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2598.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2598</a></td>
<td nowrap="nowrap">4.4</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>20392</td>
<td>20349</td>
<td>2</td>
<td>41</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-2b-1-5p_MIMAT0020782" target="_blank"> dme-miR-2b-1-5p_MIMAT0020782</a></td>
<td nowrap="nowrap">dsi-miR-13a_MIMAT0008881</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gucuucaaaguggcagugacauguugucaacaauauucauaucacagccagcuuugaggag&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2598&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaucacagccagcuuugaggag</td>
<td>gucuucaaaguggcagug</td>
<td>gucuucaaaguggcagugacauguugucaacaauauucauaucacagccagcuuugaggag</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:8258623..8258684:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_26925.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_26925</a></td>
<td nowrap="nowrap">4.3</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>11</td>
<td>11</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-252-5p_MIMAT0005516" target="_blank"> dme-miR-252-5p_MIMAT0005516</a></td>
<td nowrap="nowrap">dsi-miR-252-5p_MIMAT0012465</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=cuaaguacuagugccgcaggaguuagguucguguccgcaauaccuccugcugcccaagugcuuauua&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_26925&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>cuaaguacuagugccgcaggag</td>
<td>ccugcugcccaagugcuuauua</td>
<td>cuaaguacuagugccgcaggaguuagguucguguccgcaauaccuccugcugcccaagugcuuauua</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:13464229..13464296:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23145.pdf">3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23145</a></td>
<td nowrap="nowrap">4.2</td>
<td>0.76 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>282</td>
<td>282</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-318-5p_MIMAT0020844" target="_blank"> dme-miR-318-5p_MIMAT0020844</a></td>
<td nowrap="nowrap">dsi-miR-3_MIMAT0008862</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ggauacacacaguucaguuuugucacacuucaagcaucacugggcuuuguuuaucuca&JOB_TITLE=3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF_23145&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucacugggcuuuguuuaucuca</td>
<td>ggauacacacaguucaguuuug</td>
<td>ggauacacacaguucaguuuugucacacuucaagcaucacugggcuuuguuuaucuca</td>
<td>3R_dna:chromosome_chromosome:BDGP6:3R:1:32079331:1_REF:10408307..10408365:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3204.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3204</a></td>
<td nowrap="nowrap">3.5</td>
<td>0.74 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>347</td>
<td>344</td>
<td>0</td>
<td>3</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-1006-5p_MIMAT0020903" target="_blank"> dme-miR-1006-5p_MIMAT0020903</a></td>
<td nowrap="nowrap">dsi-miR-1006-3p_MIMAT0012444</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=gugaguuugaaauugaaaugcguaaauuguuugguacaauuuaaauucgauuucuuauucau&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_3204&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaaauucgauuucuuauucau</td>
<td>gugaguuugaaauugaaaugcgu</td>
<td>gugaguuugaaauugaaaugcguaaauuguuugguacaauuuaaauucgauuucuuauucau</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16724796..16724858:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11509.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11509</a></td>
<td nowrap="nowrap">1.7</td>
<td>0.74 &#177 0.10</td>
<td></td>
<td>TRUE</td>
<td>534</td>
<td>310</td>
<td>0</td>
<td>224</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-307a-5p_MIMAT0020832" target="_blank"> dme-miR-307a-5p_MIMAT0020832</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=acucacucaaccugggugugauguuauuucgauaugguauccaucacaaccuccuugagugagcga&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11509&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>acucacucaaccuggguguga</td>
<td>ucacaaccuccuugagugagcga</td>
<td>acucacucaaccugggugugauguuauuucgauaugguauccaucacaaccuccuugagugagcga</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:9621260..9621326:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2885.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2885</a></td>
<td nowrap="nowrap">1.2</td>
<td>0.74 &#177 0.10</td>
<td></td>
<td>TRUE</td>
<td>76</td>
<td>76</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-263a-5p_MIMAT0000319" target="_blank"> dme-miR-263a-5p_MIMAT0000319</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aauggcacuggaagaauucacgggguaauuuuuauacaacccgugaucucuuaguggcaucua&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_2885&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>aauggcacuggaagaauucacggg</td>
<td>cgugaucucuuaguggcaucua</td>
<td>aauggcacuggaagaauucacgggguaauuuuuauacaacccgugaucucuuaguggcaucua</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:11953423..11953486:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7253.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7253</a></td>
<td nowrap="nowrap">0.3</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>STAR</td>
<td>897</td>
<td>897</td>
<td>0</td>
<td>0</td>
<td>yes</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-1008-5p_MIMAT0032028" target="_blank"> dme-miR-1008-5p_MIMAT0032028</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uguaaauaucuaaaguugaacuuggccaauggcaagucacagcuuuuuguguuuacagg&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_7253&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucacagcuuuuuguguuuacagg</td>
<td>uguaaauaucuaaaguugaacu</td>
<td>uguaaauaucuaaaguugaacuuggccaauggcaagucacagcuuuuuguguuuacagg</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:10885531..10885590:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_509.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_509</a></td>
<td nowrap="nowrap">0.1</td>
<td>0.75 &#177 0.09</td>
<td></td>
<td>TRUE</td>
<td>39428</td>
<td>39428</td>
<td>0</td>
<td>0</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-305-5p_MIMAT0000391" target="_blank"> dme-miR-305-5p_MIMAT0000391</a></td>
<td nowrap="nowrap">dsi-miR-305_MIMAT0008860</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=aaaucccauguguaucaacugucucccaugucuauuguacuucaucaggugcucu&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_509&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>auuguacuucaucaggugcucu</td>
<td>aaaucccauguguaucaacug</td>
<td>aaaucccauguguaucaacugucucccaugucuauuguacuucaucaggugcucu</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:7425945..7426000:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_337.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_337</a></td>
<td nowrap="nowrap">-0.8</td>
<td>0.51 &#177 0.12</td>
<td></td>
<td>TRUE</td>
<td>17</td>
<td>17</td>
<td>0</td>
<td>0</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-1005-3p_MIMAT0005018" target="_blank"> dme-miR-1005-3p_MIMAT0005018</a></td>
<td nowrap="nowrap">dsi-miR-1005-3p_MIMAT0012468</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ugugaguugaucgauuucgagguuuuggcacacgaauauaaucuggaaucuuuaauucgcagu&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_337&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucuggaaucuuuaauucgcagu</td>
<td>ugugaguugaucgauuucgagguu</td>
<td>ugugaguugaucgauuucgagguuuuggcacacgaauauaaucuggaaucuuuaauucgcagu</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:4343694..4343757:+</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36617.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36617</a></td>
<td nowrap="nowrap">-2.7</td>
<td>0.16 &#177 0.11</td>
<td></td>
<td>TRUE</td>
<td>49</td>
<td>49</td>
<td>0</td>
<td>0</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-1007-3p_MIMAT0005020" target="_blank"> dme-miR-1007-3p_MIMAT0005020</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uaagcucaauuaacuguuugcagcggacgggaucuucucggagaaucgacgacugcuucagggauugcagcugcug&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36617&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaagcucaauuaacuguuugcag</td>
<td>gcuucagggauugcagcugcug</td>
<td>uaagcucaauuaacuguuugcagcggacgggaucuucucggagaaucgacgacugcuucagggauugcagcugcug</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:21296331..21296407:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36618.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36618</a></td>
<td nowrap="nowrap">-2.9</td>
<td>0.16 &#177 0.11</td>
<td></td>
<td>STAR</td>
<td>49</td>
<td>49</td>
<td>0</td>
<td>0</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-1007-5p_MIMAT0020904" target="_blank"> dme-miR-1007-5p_MIMAT0020904</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=guaagcaguguuugaacucgaucuugguucuuggacucuugauaagcucaauuaacuguuugcag&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36618&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uaagcucaauuaacuguuugcag</td>
<td>guaagcaguguuugaacucgauc</td>
<td>guaagcaguguuugaacucgaucuugguucuuggacucuugauaagcucaauuaacuguuugcag</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:21296384..21296449:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36620.pdf">X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36620</a></td>
<td nowrap="nowrap">-4.8</td>
<td>0.15 &#177 0.10</td>
<td></td>
<td>TRUE</td>
<td>62</td>
<td>62</td>
<td>0</td>
<td>0</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-2535b-3p_MIMAT0020510" target="_blank"> dme-miR-2535b-3p_MIMAT0020510</a></td>
<td nowrap="nowrap"></td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uaagugacuaugccgggauugugguuauugaacuuagcgucuccacucacggcauuucauucacuugca&JOB_TITLE=X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF_36620&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>acucacggcauuucauucacuugca</td>
<td>uaagugacuaugccgggauugugg</td>
<td>uaagugacuaugccgggauugugguuauugaacuuagcgucuccacucacggcauuucauucacuugca</td>
<td>X_dna:chromosome_chromosome:BDGP6:X:1:23542271:1_REF:21298275..21298344:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_17647.pdf">3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_17647</a></td>
<td nowrap="nowrap">-7.4</td>
<td>0.04 &#177 0.06</td>
<td></td>
<td>TRUE</td>
<td>56</td>
<td>56</td>
<td>0</td>
<td>0</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-285-3p_MIMAT0000356" target="_blank"> dme-miR-285-3p_MIMAT0000356</a></td>
<td nowrap="nowrap">dsi-miR-285_MIMAT0008888</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=uagcaccauucgaaaucagugcuuuugauaagaaacaaucagcgaagugucaaaucgaagcgaacuucaaaugugcuguu&JOB_TITLE=3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF_17647&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>uagcaccauucgaaaucagugcu</td>
<td>cgaacuucaaaugugcuguu</td>
<td>uagcaccauucgaaaucagugcuuuugauaagaaacaaucagcgaagugucaaaucgaagcgaacuucaaaugugcuguu</td>
<td>3L_dna:chromosome_chromosome:BDGP6:3L:1:28110227:1_REF:11946048..11946128:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11757.pdf">2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11757</a></td>
<td nowrap="nowrap">-2.3e+1
</td>
<td>0.04 &#177 0.06</td>
<td></td>
<td>TRUE</td>
<td>128</td>
<td>128</td>
<td>0</td>
<td>0</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-281-3p_MIMAT0000345" target="_blank"> dme-miR-281-3p_MIMAT0000345</a></td>
<td nowrap="nowrap">dsi-miR-281-3p_MIMAT0008906</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=ugucauggaauugcucucuuuguauaauauucgacgaugcgcugugaggcaaugagacuaaccaaacgacuaa&JOB_TITLE=2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF_11757&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ugucauggaauugcucucuuugu</td>
<td>aaugagacuaaccaaacgacuaa</td>
<td>ugucauggaauugcucucuuuguauaauauucgacgaugcgcugugaggcaaugagacuaaccaaacgacuaa</td>
<td>2R_dna:chromosome_chromosome:BDGP6:2R:1:25286936:1_REF:12170332..12170405:-</td>
</tr> <tr><td><a href="pdfs_12_10_2016_t_12_05_37/2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1059.pdf">2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1059</a></td>
<td nowrap="nowrap">-3.6e+1
</td>
<td>0.04 &#177 0.06</td>
<td></td>
<td>TRUE</td>
<td>13876</td>
<td>13876</td>
<td>0</td>
<td>0</td>
<td>no</td>
<td nowrap="nowrap"><a href="http://www.mirbase.org/cgi-bin/query.pl?terms=dme-miR-9b-5p_MIMAT0000395" target="_blank"> dme-miR-9b-5p_MIMAT0000395</a></td>
<td nowrap="nowrap">dsi-miR-9a_MIMAT0008843</td>
<td></td>
<td><a href=http://blast.ncbi.nlm.nih.gov/Blast.cgi?QUERY=acaauuauucuuaaauuuguuuaacuuauauguugcucuuuuguuugcauauuauuugcucuuuggugauuuuagcuguau&JOB_TITLE=2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF_1059&db=nucleotide&QUERY_FROM=&QUERY_TO=&QUERYFILE=&GENETIC_CODE=1&SUBJECTS=&stype=nucleotide&SUBJECTS_FROM=&SUBJECTS_TO=&SUBJECTFILE=&DBTYPE=gc&DATABASE=nr&EQ_MENU=&NUM_ORG=1&EQ_TEXT=&BLAST_PROGRAMS=blastn&PHI_PATTERN=&MAX_NUM_SEQ=100&SHORT_QUERY_ADJUST=on&EXPECT=10&WORD_SIZE=7&MATRIX_NAME=PAM30&MATCH_SCORES=2,-3&GAPCOSTS=5+2&COMPOSITION_BASED_STATISTICS=0&FILTER=L&REPEATS=repeat_9606&FILTER=m&TEMPLATE_LENGTH=0&TEMPLATE_TYPE=0&PSSM=&I_THRESH=&SHOW_OVERVIEW=true&SHOW_LINKOUT=true&GET_SEQUENCE=auauauaauauauauauauuauaa&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&ALIGNMENT_VIEW=Pairwise&MASK_CHAR=2&MASK_COLOR=1&DESCRIPTIONS=100&ALIGNMENTS=100&NEW_VIEW=true&OLD_BLAST=false&NCBI_GI=false&SHOW_CDS_FEATURE=false&NUM_OVERVIEW=100&FORMAT_EQ_TEXT=&FORMAT_ORGANISM=&EXPECT_LOW=&EXPECT_HIGH=&QUERY_INDEX=&CLIENT=web&SERVICE=plain&CMD=request&PAGE=Nucleotides&PROGRAM=blastn&MEGABLAST=&RUN_PSIBLAST=&TWO_HITS=&DEFAULT_PROG=megaBlast&WWW_BLAST_TYPE=&DB_ABBR=&SAVED_PSSM=&SELECTED_PROG_TYPE=blastn&SAVED_SEARCH=true&BLAST_SPEC=&QUERY_BELIEVE_DEFLINE=&DB_DIR_PREFIX=&USER_DATABASE=&USER_WORD_SIZE=&USER_MATCH_SCORES=&USER_FORMAT_DEFAULTS=&NO_COMMON=&NUM_DIFFS=2&NUM_OPTS_DIFFS=1&UNIQ_DEFAULTS_NAME=A_SearchDefaults_1Mn7ZD_2Sq4_1Z58HQ5Jb_23tpbD_167y9p&PAGE_TYPE=BlastSearch&USER_DEFAULT_PROG_TYPE=blastn&USER_DEFAULT_MATCH_SCORES=3. target="_blank">blast</a></td>
<td>ucuuuggugauuuuagcuguau</td>
<td>acaauuauucuuaaauuug</td>
<td>acaauuauucuuaaauuuguuuaacuuauauguugcucuuuuguuugcauauuauuugcucuuuggugauuuuagcuguau</td>
<td>2L_dna:chromosome_chromosome:BDGP6:2L:1:23513712:1_REF:16698698..16698779:+</td>
</tr></table></font><br><br><h2>mature miRBase miRNAs not detected by miRDeep2</h2><br><font face="Times New Roman" size="2">
<table border="1"> <th><a href="" class="tooltip3">miRBase precursor id<span>Clicking this field will display a pdf of the structure and read signature of the miRNA.</span></a></th>
<th><a href="" class="tooltip3">total read count<span>this is the sum of read counts for the mature and star miRNAs.</span></a></th>
<th><a href="" class="tooltip3">mature read count(s)<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the mature miRNA, including 2 nts upstream and 5 nts downstream. If more than one mature sequence is given this will be a comma separated list. In parenthesis are normalized read counts shown.</span></a></th>
<th><a href="" class="tooltip3">star read count<span>this is the number of reads that map to the miRNA hairpin and are contained in the sequence covered by the star miRNA, including 2 nts upstream and 5 nts downstream. This field is empty unless a reference star miRNA was given as input to quantifier.pl. If more than one mature sequence is given this will be a comman separated list</span></a></th>
<th><a href="http://www.ncbi.nlm.nih.gov/entrez/utils/fref.fcgi?PrId=3051&itool=AbstractPlus-def&uid=15217813&nlmid=9808944&db=pubmed&url=http://bioinformatics.oxfordjournals.org/cgi/pmidlookup?view=long&pmid=15217813" target="blank"class="tooltip3">remaining reads<span>this is the number of reads that did not map to any of the mature and star sequences</span></a></th>
<th><a href="" class="tooltip3">UCSC browser<span>if a species name was input to miRDeep2, then clicking this field will initiate a UCSC blat search of the miRNA precursor sequence against the reference genome.</span></a></th>
<th><a href="" class="tooltip3">NCBI blastn<span>clicking this field will initiate a NCBI blastn search of the miRNA precursor sequence against the nr/nt database (non-redundant collection of all NCBI nucleotide sequences).</span></a></th>
<th><a href="" class="tooltip3">miRBase mature sequence(s)<span>this is/are the mature miRNA sequence(s) input to quantifier.pl.</span></a></th>
<th><a href="" class="tooltip3">miRBase star sequence(s)<span>this is/are the star miRNA sequence(s) input to quantifier.pl. This field is empty unless a reference star miRNA was given as input to quantifier.pl.</span></a></th>
<th><a href="" class="tooltip4">miRBase precursor sequence<span>this is the precursor miRNA sequence input to quantifier.pl.</span></a></th>
</table>
</body>
</html>
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment