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Michael Dondrup mdondrup

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  • University of Bergen
  • Bergen, Norway
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@mdondrup
mdondrup / featureCounts.log
Last active June 12, 2017 08:27
Run in single end mode:
========== _____ _ _ ____ _____ ______ _____
===== / ____| | | | _ \| __ \| ____| /\ | __ \
===== | (___ | | | | |_) | |__) | |__ / \ | | | |
==== \___ \| | | | _ <| _ /| __| / /\ \ | | | |
==== ____) | |__| | |_) | | \ \| |____ / ____ \| |__| |
========== |_____/ \____/|____/|_| \_\______/_/ \_\_____/
v1.5.2
//========================== featureCounts setting ===========================\\
@mdondrup
mdondrup / gist:4adaac1ab045e9008caa1e54cc2fc940
Created March 31, 2017 09:33
Hello World!
@mdondrup
mdondrup / mirdeep2-bwa.html
Created October 17, 2016 15:12
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN"
"http://www.w3.org/TR/html4/strict.dtd">
<html>
<head>
<title>miRDeep2</title>
<!-- CSS code -->
<style type="text/css">
body{
font: .75em Arial,sans-serif;
background: #FFFFFF;
@mdondrup
mdondrup / mirdeep2-bowtie.html
Last active October 17, 2016 15:11
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN"
"http://www.w3.org/TR/html4/strict.dtd">
<html>
<head>
<title>miRDeep2</title>
<!-- CSS code -->
<style type="text/css">
body{
font: .75em Arial,sans-serif;
background: #FFFFFF;
@mdondrup
mdondrup / RangeTree.pm
Created June 3, 2014 12:15
package RangeTree;
use strict;
use warnings;
use Set::IntervalTree;
sub new {
my $class = shift;
my $self = {}; # container is a hash with seqnames as keys