Skip to content

Instantly share code, notes, and snippets.

@mdozmorov

mdozmorov/mtx_for_PCA.csv

Created August 7, 2017 18:32
Show Gist options
  • Save mdozmorov/059072a85bec127798d50960c095be9b to your computer and use it in GitHub Desktop.
Save mdozmorov/059072a85bec127798d50960c095be9b to your computer and use it in GitHub Desktop.
Download ZIP
Raw
gistfile1.txt
"","E116.11BivFlnk.chromStates15","E116.14ReprPCWk.chromStates15","E116.15Quies.chromStates15","E116.1TssA.chromStates15","E116.2TssAFlnk.chromStates15","E116.3TxFlnk.chromStates15","E116.4Tx.chromStates15","E116.5TxWk.chromStates15","E116.6EnhG.chromStates15","E116.7Enh.chromStates15","E116.8ZNFRpts.chromStates15","E116.9Het.chromStates15","category"
"crohns_disease",0.162052705452119,0.0635253490922535,-19.2252181061205,1.06711427791428,9.90758142461494,0.00255822057746797,2.56100484438806,-0.253587329445552,3.38505679108121,11.2870094369073,2.23623723813231,2.68992814221344,"autoimmune"
"ulcerative_colitis",0.187763955873977,0.127638469530766,-13.9279062300709,2.52742536677685,2.98729538325691,2.42524539010519,1.11285397153932,0.594831983850718,-0.0732590594795718,4.09316926199843,0.887628082728305,3.77780261525578,"autoimmune"
"rheumatoid_arthritis",0.158691039640792,-0.0296551102513595,-15.3251476656711,1.55895110481963,15.8450458804273,0.547902010147141,0.337374925927234,1.52148872631903,1.58794719778817,6.64619143124456,0.108500527850604,0.549127509845158,"autoimmune"
"multiple_sclerosis",0.148093097017016,-1.77088318572457,-9.38905435025881,1.24833698288632,10.2989922020321,6.33913575793361,0.376920825953142,2.04753017795499,1.04277499041604,5.59493451177003,-0.176345164456283,0.192319216637399,"autoimmune"
"psoriasis",0.136466402694932,-1.86082041481394,-9.34258208438247,1.6467812911513,3.56670488133778,10.3442333418899,4.90531928260579,1.72421389050674,0.566966584949462,0.749239854276722,1.01652101618443,0.116170498978402,"autoimmune"
"asthma",0.124143533825252,1.05146039526385,-3.11899088121165,0.207929715757197,0.790531928750958,0.333120888573871,-0.537068667827545,0.609439605474154,1.73934777285496,0.832316988611693,0.390555089898279,-0.186128361874169,"autoimmune"
"inflammatory_skin_disease",0.102294601506783,-0.211128269987675,-1.25122418490535,0.548028780224239,-0.190293836967443,1.9130470415672,2.05468541708116,0.702899641142691,0.114377788340034,-0.0381808717625878,-0.262083355325337,0.0410128160687114,"autoimmune"
"type_1_diabetes",0.0957969469142584,1.5176522068925,-4.52315423682159,1.57929976862666,2.05073614695351,-0.286744864455951,0.831841145337788,0.493878711383272,0.0778860510632236,-0.0455896583853798,0.00862228984680521,-0.161208563976313,"autoimmune"
"celiac_disease",0.0868237692152386,0.473284555643111,-3.74665489223106,0.242152639061098,2.74510976045347,0.0361719150112128,0.367842957285922,-0.400824546549415,0.0274734118938907,0.562308557182828,0.0568493744592714,0.772515241967227,"autoimmune"
"atopic_dermatitis",0.085380811446476,1.13328213074264,-3.36553519991676,0.262867752421847,0.946182050528858,0.0445841262663575,-0.124078239206016,0.0222102679064168,0.019357140203345,1.81024867016443,0.0656392321327353,0.0481441339100217,"autoimmune"
"platelet_count",0.0990848690961901,-0.258268554677959,-5.51617749431085,0.617744513499017,5.32305560578315,0.0261914518298562,1.67697890353786,-1.12128169827274,24.9640599687308,3.9105165443451,0.00680499177769065,-0.393350721783162,"blood"
"blood_protein_levels",0.280756195016817,1.24910127305966,-6.55997489737814,2.61862405936669,0.0105431024000058,0.0276172795407815,0.195302424706138,2.10176484870926,2.5926995705705,0.638022679802305,-0.44966413087625,0.13046481856343,"blood"
"hdl_cholesterol",0.370533299513541,1.00382484341146,-3.73885498381629,-0.49987069867327,1.05592220048988,-0.000834075404528739,4.10724878220288,0.707656612695693,-0.121551508822296,0.50820158102225,-0.136509187931839,-0.824640738138253,"blood"
"blood_metabolite_levels",0.155368496049299,-1.26959024642367,-0.724685575276615,0.554870664053576,-0.216669676026561,-0.0882400729228638,7.85517179969516,0.609107507557593,0.891306211566339,-0.0422277168300626,-0.0560997737570763,-0.288896519443608,"blood"
"red_blood_cell_traits",0.085380811446476,-0.00781544658873593,-2.23535587271609,-0.0218422207951322,-0.0150840220235695,0.292058092858656,0.409553169974159,1.99989228174513,0.019357140203345,2.63966444501226,0.278741465463167,-0.0481441339100217,"blood"
"mean_platelet_volume",1.65586078077631,0.0815205342561071,-6.36210768603617,0.124375600639997,-0.113266026908544,0.263177341610559,0.0125752233876751,3.70876734396508,0.0242914256885888,4.76213681807988,0.117305815063213,0.0296939990693477,"blood"
Raw
mtx_for_PCA.csv
E116.11BivFlnk.chromStates15 E116.14ReprPCWk.chromStates15 E116.15Quies.chromStates15 E116.1TssA.chromStates15 E116.2TssAFlnk.chromStates15 E116.3TxFlnk.chromStates15 E116.4Tx.chromStates15 E116.5TxWk.chromStates15 E116.6EnhG.chromStates15 E116.7Enh.chromStates15 E116.8ZNFRpts.chromStates15 E116.9Het.chromStates15 category
crohns_disease 0.162052705452119 0.0635253490922535 -19.2252181061205 1.06711427791428 9.90758142461494 0.00255822057746797 2.56100484438806 -0.253587329445552 3.38505679108121 11.2870094369073 2.23623723813231 2.68992814221344 autoimmune
ulcerative_colitis 0.187763955873977 0.127638469530766 -13.9279062300709 2.52742536677685 2.98729538325691 2.42524539010519 1.11285397153932 0.594831983850718 -0.0732590594795718 4.09316926199843 0.887628082728305 3.77780261525578 autoimmune
rheumatoid_arthritis 0.158691039640792 -0.0296551102513595 -15.3251476656711 1.55895110481963 15.8450458804273 0.547902010147141 0.337374925927234 1.52148872631903 1.58794719778817 6.64619143124456 0.108500527850604 0.549127509845158 autoimmune
multiple_sclerosis 0.148093097017016 -1.77088318572457 -9.38905435025881 1.24833698288632 10.2989922020321 6.33913575793361 0.376920825953142 2.04753017795499 1.04277499041604 5.59493451177003 -0.176345164456283 0.192319216637399 autoimmune
psoriasis 0.136466402694932 -1.86082041481394 -9.34258208438247 1.6467812911513 3.56670488133778 10.3442333418899 4.90531928260579 1.72421389050674 0.566966584949462 0.749239854276722 1.01652101618443 0.116170498978402 autoimmune
asthma 0.124143533825252 1.05146039526385 -3.11899088121165 0.207929715757197 0.790531928750958 0.333120888573871 -0.537068667827545 0.609439605474154 1.73934777285496 0.832316988611693 0.390555089898279 -0.186128361874169 autoimmune
inflammatory_skin_disease 0.102294601506783 -0.211128269987675 -1.25122418490535 0.548028780224239 -0.190293836967443 1.9130470415672 2.05468541708116 0.702899641142691 0.114377788340034 -0.0381808717625878 -0.262083355325337 0.0410128160687114 autoimmune
type_1_diabetes 0.0957969469142584 1.5176522068925 -4.52315423682159 1.57929976862666 2.05073614695351 -0.286744864455951 0.831841145337788 0.493878711383272 0.0778860510632236 -0.0455896583853798 0.00862228984680521 -0.161208563976313 autoimmune
celiac_disease 0.0868237692152386 0.473284555643111 -3.74665489223106 0.242152639061098 2.74510976045347 0.0361719150112128 0.367842957285922 -0.400824546549415 0.0274734118938907 0.562308557182828 0.0568493744592714 0.772515241967227 autoimmune
atopic_dermatitis 0.085380811446476 1.13328213074264 -3.36553519991676 0.262867752421847 0.946182050528858 0.0445841262663575 -0.124078239206016 0.0222102679064168 0.019357140203345 1.81024867016443 0.0656392321327353 0.0481441339100217 autoimmune
platelet_count 0.0990848690961901 -0.258268554677959 -5.51617749431085 0.617744513499017 5.32305560578315 0.0261914518298562 1.67697890353786 -1.12128169827274 24.9640599687308 3.9105165443451 0.00680499177769065 -0.393350721783162 blood
blood_protein_levels 0.280756195016817 1.24910127305966 -6.55997489737814 2.61862405936669 0.0105431024000058 0.0276172795407815 0.195302424706138 2.10176484870926 2.5926995705705 0.638022679802305 -0.44966413087625 0.13046481856343 blood
hdl_cholesterol 0.370533299513541 1.00382484341146 -3.73885498381629 -0.49987069867327 1.05592220048988 -0.000834075404528739 4.10724878220288 0.707656612695693 -0.121551508822296 0.50820158102225 -0.136509187931839 -0.824640738138253 blood
blood_metabolite_levels 0.155368496049299 -1.26959024642367 -0.724685575276615 0.554870664053576 -0.216669676026561 -0.0882400729228638 7.85517179969516 0.609107507557593 0.891306211566339 -0.0422277168300626 -0.0560997737570763 -0.288896519443608 blood
red_blood_cell_traits 0.085380811446476 -0.00781544658873593 -2.23535587271609 -0.0218422207951322 -0.0150840220235695 0.292058092858656 0.409553169974159 1.99989228174513 0.019357140203345 2.63966444501226 0.278741465463167 -0.0481441339100217 blood
mean_platelet_volume 1.65586078077631 0.0815205342561071 -6.36210768603617 0.124375600639997 -0.113266026908544 0.263177341610559 0.0125752233876751 3.70876734396508 0.0242914256885888 4.76213681807988 0.117305815063213 0.0296939990693477 blood
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment