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mdshw5/answer.py

Created March 22, 2018 01:16
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answer.py
from simplesam import Reader
with Reader(open("input.sam")) as sam, open("output.fastq", "w") as fastq:
for read in sam:
fastq.write("@%s\n" % read.qname)
fastq.write("%s\n" % read.seq)
fastq.write("+\n")
fastq.write("%s\n" % read.qual)
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