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mdshw5/answer.py

Created July 19, 2017 14:27
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answer.py
from pyfaidx import Fasta
with Fasta('input.fasta') as fasta:
with open('pos.txt', 'r') as nucleotides:
for line in nucleotides:
chrom, pos = line.rstrip().split()
nuc = fasta[chrom][int(pos)].seq
print("{chrom}\t{pos}\t{nuc}".format(**locals()))
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