.profile

# ~/.profile: executed by the command interpreter for login shells.
# This file is not read by bash(1), if ~/.bash_profile or ~/.bash_login
# exists.
# see /usr/share/doc/bash/examples/startup-files for examples.
# the files are located in the bash-doc package.

# the default umask is set in /etc/profile; for setting the umask
# for ssh logins, install and configure the libpam-umask package.
#umask 022

# if running bash
if [ -n "$BASH_VERSION" ]; then
    # include .bashrc if it exists
    if [ -f "$HOME/.bashrc" ]; then
  . "$HOME/.bashrc"
    fi
fi

# set PATH so it includes user's private bin if it exists
if [ -d "$HOME/bin" ] ; then
    PATH="$HOME/bin:$PATH"
fi

# initialize FSL environment
source /etc/fsl/fsl.sh

# Freesurfer configuration
export FS_FREESURFERENV_NO_OUTPUT=1
export FREESURFER_HOME=/usr/local/freesurfer
source $FREESURFER_HOME/SetUpFreeSurfer.sh

# initialize RVM environment
[[ -s "$HOME/.rvm/scripts/rvm" ]] && source "$HOME/.rvm/scripts/rvm" # Load RVM into a shell session *as a function*

# initialize pythonbrew
[[ -s "$HOME/.pythonbrew/etc/bashrc" ]] && source "$HOME/.pythonbrew/etc/bashrc"

# tmuxinator
[[ -s $HOME/.tmuxinator/scripts/tmuxinator ]] && source $HOME/.tmuxinator/scripts/tmuxinator

# AFNI
if [ -d "/usr/lib/afni/bin" ] ; then
    PATH="$PATH:/usr/lib/afni/bin"
fi

# if running bash
if [ -n "$BASH_VERSION" ]; then
    # startup virtualenv-burrito
    if [ -f "$HOME/.venvburrito/startup.sh" ]; then
        . "$HOME/.venvburrito/startup.sh"
    fi
fi