Dockerfile

FROM jupyter/datascience-notebook:eb149a8c333a

MAINTAINER dev@brockmann-consult.de
LABEL version='0.6.1'

USER root
RUN sudo apt-get update && sudo apt-get upgrade -y
RUN sudo apt-get install -y git unzip apt-utils vim

ADD start.sh /usr/local/bin/start.sh

USER $NB_USER

RUN conda install --quiet --yes -c pytorch -c bc-dev -c conda-forge\
    cudatoolkit=9.0 \
    geopandas \
    # widgetsnbextension \
    rasterio \
    xarray \
    zarr \
    gridtools \
    basemap \
    ffmpeg \
    netcdf4 \
    pyproj \
    datashader \
    regionmask \
    cartopy \
    pysheds \
    pytorch \
    torchvision \
    tensorflow \
    s3fs \
    r-rgdal \
    r-rgeos


RUN conda list
RUN pip install git+https://github.com/esa-esdl/esdl-core.git

WORKDIR /home/jovyan/work

RUN julia -e 'using Pkg; pkg"rm Gadfly"; pkg"update"; pkg"precompile"; '
RUN julia -e 'using Pkg; pkg"add JSON"; pkg"precompile"'

RUN julia -e 'using Pkg;pkg"add WebIO ColorTypes MultivariateStats PackageCompiler ProgressMeter GR ECharts PyPlot CSV";pkg"build WebIO";pkg"precompile"'
RUN julia -e 'using Pkg;pkg"add https://github.com/esa-esdl/ESDL.jl https://github.com/esa-esdl/ESDLPlots.jl"'
RUN julia -e 'using Pkg;pkg"add Zarr"'
RUN julia -e 'using Pkg;pkg"add MultivariateAnomalies#master";pkg"precompile"'
RUN julia -e 'using WebIO'

ENV ESDL_WORKDIR /home/jovyan/tmp

USER root
RUN apt-get -y install libcurl4-openssl-dev libssl-dev libgdal-dev libproj-dev
RUN R -e "install.packages(c('data.table'),repos='http://cran.us.r-project.org')"
RUN R -e "install.packages(c('ggplot2','raster','sp','zoo','rgdal','dplyr','vegan','ape','Rtsne','Rcpp','inline'),repos='http://cran.us.r-project.org')"

USER $NB_USER