Created
August 8, 2012 20:27
-
-
Save mercutio22/3298349 to your computer and use it in GitHub Desktop.
exemplo de template
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
{% extends "base_search_bar.html" %} | |
{% block title %} Gene | {{ gene.symbol }} {% endblock title %} | |
{% block extra-head %} | |
{{ block.super }} | |
<link rel="stylesheet" type="text/css" href="{{ STATIC_URL }}django_tables2/themes/paleblue/css/screen.css" /> | |
{% endblock extra-head %} | |
{% block content %} | |
<h1>{{ gene.description }}</h1> | |
<div id="content-info"> | |
<div class="info summary"> | |
<h2>Summary</h2> | |
<dl> | |
<dt>Official symbol:</dt> | |
<dd><a target="_blank" href="http://www.ncbi.nlm.nih.gov/gene/{{ gene.entrez_id }}">{{ gene.symbol }}</a></dd> | |
<dt>Full name:</dt> | |
<dd>{{ gene.description }} </dd> | |
{% if gene.genesynonyms_set.all %} | |
<dt>Other aliases:</dt> | |
<dd> | |
{% for acronym in gene.genesynonyms_set.all %} | |
{{ acronym.symbol }} | |
{% endfor %} | |
</dd> | |
{% endif %} | |
<dt>Gene type:</dt> | |
<dd>{{ gene.type }}</dd> | |
{% if gene.ensembl_id %} | |
<dt>Ensembl:</dt> | |
<dd><a target="_blank" href="http://www.ensembl.org/id/{{ gene.ensembl_id }}">{{ gene.ensembl_id }}</a></dd> | |
{% endif %} | |
{% if gene.hgnc_id %} | |
<dt>HGNC:</dt> | |
<dd><a target="_blank" href="http://www.genenames.org/data/hgnc_data.php?hgnc_id={{ gene.hgnc_id }}">{{gene.hgnc_id }}</a></dd> | |
{% endif %} | |
<dt>Entrez gene:</dt> | |
<dd><a target="_blank" href="http://www.ncbi.nlm.nih.gov/gene/{{ gene.entrez_id }}">{{ gene.entrez_id }}</a></dd> | |
{% if gene.summary %} | |
<dt>Summary:</dt> | |
<dd>{{ gene.summary }}</dd> | |
{% endif %} | |
</dl> | |
</div> | |
<div class="info genomic_context"> | |
<h2>Genomic context</h2> | |
<dl> | |
<dt>Chromosome:</dt> | |
<dd>{{ region.chromosome }}</dd> | |
<dt>Strand:</dt> | |
<dd>{{ region.strand }}</dd> | |
<dt>Start:</dt> | |
<dd>{{ region.tx_start }}</dd> | |
<dt>End:</dt> | |
<dd>{{ region.tx_end }}</dd> | |
</dl> | |
<div id="diagram"> | |
<figure id="gene-sketch"> | |
<img src="{% filter force_escape %}{{ STATIC_URL }}/genes/{{ gene.symbol }}.PNG{% endfilter %}" alt="Gene diagram" /> | |
<figcaption id="sketch-caption">schematic diagram of {{ gene.symbol }}</figcaption> | |
</figure> | |
</div> | |
{% if gene.mirnainformation_set.all|length %} | |
<h3 class="has-micro">Intragenic microRNAs</h3> | |
<table width="100%"> | |
<thead> | |
<tr> | |
<th>miRNA</th> | |
<!-- <th>coordinates</th> --> | |
<th>region</th> | |
<th>intron/exon number</th> | |
<th>distance from 5' exon</th> | |
<th>direction</th> | |
</tr> | |
</thead> | |
<tbody> | |
{% for mirna in gene.mirnainformation_set.all %} | |
<tr> | |
<td><a href="{% url miRNA_info slug=mirna.symbol %}">{{ mirna }}</a></td> | |
{#<td>{{ mirna.start }}..{{ mirna.end }}</td> #} | |
{% if mirna.exonic == 0 %} | |
<td>intronic</td> | |
{% else %} | |
<td>exonic</td> | |
{% endif %} | |
<td>{{ mirna.intron_exon_number }}</td> | |
<td>{{ mirna.distance_exon_upstream }}</td> | |
{% if mirna.direction == "++" or mirna.direction == "--" %} | |
<td>sense</td> | |
{% else %} | |
<td>antisense</td> | |
{% endif %} | |
</tr> | |
{% endfor %} | |
</tbody> | |
</table> | |
{% else %} | |
<p class="no-micro">There are no microRNAs mapped within <span>{{ gene.symbol }}</span> in our database</p> | |
{% endif %} | |
</div> <!-- end of genomic context --> | |
<div class="info mirna-binding-sites"> | |
<h2>microRNA binding sites </h2> | |
{% if region.targetinteractionsummary_set.exists %} | |
{% load render_table from django_tables2 %} | |
{% render_table TargetsTable %} | |
{% else %} | |
<p> There are no {{ gene.symbol }} microRNA binding sites described in our database.</p> | |
{% endif %} | |
</div> <!-- end of mirna-binding-sites --> | |
<div class="info alternative-polya"> | |
<h2>Alternative polyadenilation</h2> | |
blalbal | |
</div> <!-- end of alternative poly-a --> | |
<div class="info prot-interaction"> | |
<h2>Protein-protein interactions</h2> | |
{% if gene.primary_interactions.exists %} | |
{% load render_table from django_tables2 %} | |
{% render_table piTable %} | |
{% else %} | |
<p class="no-prot">There are no protein interactions for <span>{{ gene.symbol }}</span> in our database.</p> | |
{% endif %} | |
</div> <!-- end of protein interactions --> | |
</div> <!-- end of content info --> | |
<div id="sidebar"> | |
<h4 class="first">External links</h4> | |
<ul> | |
<li class="first"><a target="_blank" href="http://www.ncbi.nlm.nih.gov/gene/{{ gene.entrez_id }}">NCBI Entrez</a></li> | |
<li><a | |
target="_blank" | |
href="http://genome.ucsc.edu/cgi-bin/hgTracks?hgHubConnect.destUrl=..%2Fcgi-bin%2FhgTracks&clade=mammal&org=Human&db=hg19&position={{ region.chromosome }}%3A{{ region.tx_start }}-{{ region.tx_end }}&hgt.suggest=&hgt.suggestTrack=knownGene&Submit=submit&hgsid=279582653" | |
> | |
UCSC Genome Browser</a></li> | |
<li><a target="_blank" href="http://www.ensembl.org/id/{{ gene.ensembl_id }}">Ensembl</a></li> | |
<li class="last"><a target="_blank" href="http://www.genome.jp/dbget-bin/www_bget?hsa:{{ gene.entrez_id }}">KEGG</a></li> | |
</ul> | |
<h4>MicroRNA related</h4> | |
<ul> | |
<li class="first"><a target="_blank" href="http://www.targetscan.org">TargetScan</a></li> | |
<li><a target="_blank" href="http://www.ebi.ac.uk/enright-srv/microcosm/cgi-bin/targets/v5/hit_list.pl?genome_id=2964&mirna_id=&external_name={{ gene.symbol }}&gene_id=&go_class=function&go_term=&logic=phrase&terms=">MicroCosm</a></li> | |
<li><a href="">Mirbase</a></li> | |
<li class="last"><a href="">Mirbase</a></li> | |
</ul> | |
</div> | |
{% endblock %} |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment