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A. Murat Eren (Meren) meren

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meren / Dockerfile_v5.5.sh
Last active May 1, 2019 20:24
Docker file for anvi'o versions
FROM ubuntu:xenial
ENV ANVIO_VERSION 5.5
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get update
RUN apt-get install locales
RUN locale-gen en_US.UTF-8
ENV LANG='en_US.UTF-8' LANGUAGE='en_US:en' LC_ALL='en_US.UTF-8'
@meren
meren / gist:f8debee8322f40c2ddde
Last active October 17, 2021 12:17
Making an anvi'o release
#################################################################################
#
# PREPARING RELEASE NOTES FOR A MAJOR RELEASE
#
#################################################################################
# if this is a major release,
# prepare a new logo.
# prepare comprehensive release notes. see examples for release notes here:
# https://github.com/meren/anvio/releases
@meren
meren / bpc_pubs.py
Last active October 23, 2015 16:27
Takes an "EndNote library" exported as TXT, and generates an HTML output that can be copy-pasted to WordPress. Embarrassingly ad-hoc. I regret nothing. Here is the output: http://www.mbl.edu/jbpc/publicationsparentpage/
# people who have links
author_links = {'Eren, A. M.': 'http://meren.org/research/',
'Algar, C. K.': 'http://www.mbl.edu/jbpc/faculty/huber/',
'Alliegro, M. A.': 'http://www.mbl.edu/jbpc/faculty/alliegro/',
'Alliegro, M. C.': 'http://www.mbl.edu/jbpc/faculty/alliegro/',
'Amaral-Zettler, L. A.': 'http://www.mbl.edu/jbpc/faculty/amaralzettler/',
'Arkhipova, I. R.': 'http://www.mbl.edu/jbpc/faculty/arkhipova/',
'Belfort, M.': 'http://www.albany.edu/biology/faculty/mbelfort/',
'Bordenstein, S. R.': 'https://medschool.mc.vanderbilt.edu/biosci/bio_fac.php?id3=17392',
'Borisy, G. G.': 'http://forsyth.org/person/scientist/gary-borisy',