merrbii merrbii

## keybase.md

      
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                merrbii
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              Created
              January 25, 2024 19:13
            
          
    Keybase proof

I hereby claim:

I am merrbii on github.
I am siimoo (https://keybase.io/siimoo) on keybase.
I have a public key ASBrYh8wuYD7vWGNzLLPlg4D8Fhq3GFt4grGPJGyVozJ5Ao

To claim this, I am signing this object:

  
## BCFtools cheat sheet
*bcftools filter
*Filter variants per region (in this example, print out only variants mapped to chr1 and chr2)
qbcftools filter -r1,2 ALL.chip.omni_broad_sanger_combined.20140818.snps.genotypes.hg38.vcf.gz

*printing out info for only 2 samples:
bcftools view -s NA20818,NA20819 filename.vcf.gz

*printing stats only for variants passing the filter:
bcftools view -f PASS filename.vcf.gz
	*bcftools filter
	*Filter variants per region (in this example, print out only variants mapped to chr1 and chr2)
	qbcftools filter -r1,2 ALL.chip.omni_broad_sanger_combined.20140818.snps.genotypes.hg38.vcf.gz

	*printing out info for only 2 samples:
	bcftools view -s NA20818,NA20819 filename.vcf.gz

	*printing stats only for variants passing the filter:
	bcftools view -f PASS filename.vcf.gz