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Yuki Naito meso-cacase

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View AMED_Off-target_Check_list_202002.txt
# Off-target check list from AMED
# https://www.amed.go.jp/program/list/17/01/yakuzai_kakusaniyakuhin.html
AAAS 8086
AASS 10157
ABAT 18
ABCA1 19
ABCA12 26154
ABCA3 21
ABCA4 24
ABCB11 8647
View Shibata_List.txt
# Shibata List from https://www.pmda.go.jp/files/000155938.pdf
ABL1
ABL2
ACVR1B
AFF3
AKAP9
AKT1
AKT2
ALK
APC
View CRISPRdirect_update_cyanobase.md

[2017-11-30] Database added

  • Synechocystis sp. PCC 6803 genome, GCA_000009725.1
  • Nostoc sp. PCC 7120 genome, GCA_000009705.1
  • Thermosynechococcus elongatus BP-1 genome, GCA_000011345.1
  • Microcystis aeruginosa NIES-843 genome, GCA_000010625.1
  • Gloeobacter violaceus PCC 7421 genome, GCA_000011385.1
  • Chlorobium tepidum TLS genome, GCA_000006985.1
  • Prochlorococcus marinus subsp. marinus str. CCMP1375 genome, GCA_000007925.1
  • Synechococcus elongatus PCC 6301 genome, GCA_000010065.1
View 11mers_not_used_in_hg38.txt
ACCGATACGCG
ACCGTTCGTCG
ACGACCGTTCG
ACGATCGTCGG
ACGCGCGATAT
ACGGTACGTCG
AGCGTCGTACG
ATATCGCGCGG
ATATCGCGCGT
ATCGTCGACGA
View CRISPRdirect_update.md

[2018-09-02] Database added

  • Aedes aegypti genome, AaegL5 (Jun, 2017)
  • Aedes albopictus genome, AaloF1 (Nov, 2015)
  • Kluyveromyces marxianus genome, KM1777_03 (Oct, 2014)
  • Komagataella phaffii CBS 7435 genome, PicPas_Mar2011 (Oct, 2016)
  • Glycine max genome, v2.0 (Nov, 2015)
  • Sorghum bicolor genome, NCBIv3 (Jun, 2017)

[2018-05-10] Database added

View U133P2GeneID.txt
1007_s_at 780
117_at 3310
1255_g_at 2978
1294_at 7318
1320_at 11099
1405_i_at 6352
1431_at 1571
1438_at 2049
1487_at 2101
1552256_a_at 949
@meso-cacase
meso-cacase / probe2gene_ggrna.pl
Created Feb 22, 2016
GGRNAをつかいプローブIDと遺伝子の対応表を作成
View probe2gene_ggrna.pl
#!/usr/bin/perl
use warnings ;
use strict ;
use LWP::Simple ;
while (<>){
chomp ;
# ProbeIDを標準入力から取得
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