Moved to: https://github.com/meso-cacase/GGGenome/wiki/SARS-CoV-2
Yuki Naito meso-cacase
meso-cacase
/ hs_refseq215_3utr.bed
Created
August 22, 2023 08:17
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| NM_000014.6 4495 4610 | |
| NM_000015.3 943 1285 | |
| NM_000016.6 1345 2261 | |
| NM_000017.4 1299 1859 | |
| NM_000018.4 2015 2184 | |
| NM_000019.4 1324 1537 | |
| NM_000020.3 1709 4177 | |
| NM_000021.4 1616 6018 | |
| NM_000022.4 1184 1496 | |
| NM_000023.4 1200 1429 |
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| #!/usr/bin/perl | |
| # RefSeqのIDを順番に並べ替える | |
| # | |
| # NM_123456.7 | |
| # NM_123456789.12 | |
| # | |
| # (1:アルファベット部)_(2:整数部).(3:バージョン番号) | |
| # 1 -> 2 -> 3 の優先順位でソートする | |
| # |
meso-cacase
/ AMED_Off-target_Check_list_202002.txt
Last active
August 24, 2020 05:33
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| # Off-target check list from AMED | |
| # https://www.amed.go.jp/program/list/17/01/yakuzai_kakusaniyakuhin.html | |
| AAAS 8086 | |
| AASS 10157 | |
| ABAT 18 | |
| ABCA1 19 | |
| ABCA12 26154 | |
| ABCA3 21 | |
| ABCA4 24 | |
| ABCB11 8647 |
meso-cacase
/ Shibata_List.txt
Created
June 22, 2020 04:57
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| # Shibata List from https://www.pmda.go.jp/files/000155938.pdf | |
| ABL1 | |
| ABL2 | |
| ACVR1B | |
| AFF3 | |
| AKAP9 | |
| AKT1 | |
| AKT2 | |
| ALK | |
| APC |
meso-cacase
/ GGGenome_update_SARS-CoV-2.md
Last active
September 24, 2020 06:45
meso-cacase
/ CRISPRdirect_update_cyanobase.md
Last active
September 24, 2020 07:09
Moved to: https://github.com/meso-cacase/CRISPRdirect/wiki/CyanoBase
- Synechocystis sp. PCC 6803 genome, GCA_000009725.1
- Nostoc sp. PCC 7120 genome, GCA_000009705.1
meso-cacase
/ GGGenome_update_cyanobase.md
Last active
September 24, 2020 06:45
meso-cacase
/ 11mers_not_used_in_hg38.txt
Created
March 2, 2017 13:38
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| ACCGATACGCG | |
| ACCGTTCGTCG | |
| ACGACCGTTCG | |
| ACGATCGTCGG | |
| ACGCGCGATAT | |
| ACGGTACGTCG | |
| AGCGTCGTACG | |
| ATATCGCGCGG | |
| ATATCGCGCGT | |
| ATCGTCGACGA |
meso-cacase
/ CRISPRdirect_update.md
Last active
September 24, 2020 07:09
Moved to: https://github.com/meso-cacase/CRISPRdirect/wiki/Database-update-history
- Aedes aegypti genome, AaegL5 (Jun, 2017)
- Aedes albopictus genome, AaloF1 (Nov, 2015)
meso-cacase
/ GGGenome_update.md
Last active
September 24, 2020 06:44
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