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metaVariable / 00_Open3D_x11_docker.md
Last active June 8, 2021 08:56
Singularity (Docker) + Open3D + x11転送 (2021.06.08)

目的とか

ホストのglibcが古過ぎるとかの理由で、コンテナ（Singularity or Docker）でOpen3Dを使いたいという人向け

1. Open3Dイメージのビルド

添付のDockerfileを基にOpen3D用のDockerイメージを用意する。 元はOpen3Dのドキュメントで、x11転送用に x11-apps を追加している。

  • ビルドはローカル環境（docker-ce-20.10.6）
  • ${docker_account} は自分のDocker Hubのアカウント名
@metaVariable
metaVariable / fftw_local_build.sh
Last active April 23, 2020 06:55
ローカルでfftwをとりあえずビルドするやつ
#!/bin/bash -eu
DOWNLOAD_PATH=${DOWNLOAD_PATH:-"/tmp"}
INSTALL_PATH=${INSTALL_PATH:-"$HOME/local/fftw"}
cwd=`pwd`
echo -e " \n\
# PATH
DOWNLOAD_PATH = ${DOWNLOAD_PATH} \n\
@metaVariable
metaVariable / loop.sh
Last active November 13, 2019 06:35
適当なコマンドをターミナルで定期実行するコマンド
#!/bin/bash
CMD=${CMD:-"qstat"}
WAIT=${WAIT:-"60s"}
MAX=${MAX:-"10000"}
for i in $(seq $MAX)
do
clear
printf " ==== $(date +%H:%M:%S) ====\n\n"
@metaVariable
metaVariable / tmux_local_build.sh
Last active July 12, 2019 05:07
build local tmux without privilege
# 参考元: https://qiita.com/mkuriki_/items/f934c8a81c922832a618#_reference-e7c0fc5959275df5a954
BUILD_DIR="$HOME/tmux-build"
INSTALL_DIR="$HOME/.local"
libevent_ver="2.1.8-stable"
ncurses_ver="6.1"
tmux_ver="2.6"
mkdir -p ${BUILD_DIR}
cd ${BUILD_DIR}
@metaVariable
metaVariable / qrsh_jupyter-notebook_t3.md
Last active July 9, 2019 14:11
qrsh + singularity + X11 Firefox + Jupyter Notebook on TSUBAME3.0

qrsh + singularity + X11 Firefox + Jupyter Notebook on TSUBAME3.0

目的

SSHポートフォワードが提供されていない qrsh コマンドで Jupyter Notebook を利用したい on TSUBAME3.0

概要

@metaVariable
metaVariable / pqstat.py
Created June 27, 2019 11:30 — forked from JonnoFTW/pqstat.py
A python curses script to interactively view SGE qstat output
#!/usr/bin/env python
import curses
import subprocess
import sys
from datetime import datetime
AUTHOR = "Jonathan Mackenzie"
NAME = "pqstat"
def get_qstat(args):
return subprocess.Popen(['qstat']+args,stdout=subprocess.PIPE).communicate()[0]
def main(scr):
@metaVariable
metaVariable / mpi_hello.c
Last active July 2, 2019 05:31
#include <mpi.h>
#include <stdio.h>
int main(int argc, char** argv) {
// Initialize the MPI environment
MPI_Init(NULL, NULL);
// Get the number of processes
int world_size;
MPI_Comm_size(MPI_COMM_WORLD, &world_size);
@metaVariable
metaVariable / setupSingularity-2.5.1.sh
Last active May 15, 2018 04:02
install singularity-2.5.1 with privilege for CentOS
#!/bin/bash
VERSION=2.5.1
echo "# install squashfs-tools for CentOS."
echo "# update and install squashfs-tools."
yum update -y
yum install -y squashfs-tools libarchive-devel
# Singularity
echo "# make singularity-$VERSION."
@metaVariable
metaVariable / Dockerfile.ghostz-1.0.0
Created April 16, 2018 09:38
ghostz-1.0.0-easy-setup
# docker build . ghostz:1.0.0
FROM gcc:7.3.0
RUN wget -P /tmp http://www.bi.cs.titech.ac.jp/ghostz/releases/ghostz-1.0.0.tar.gz && \
tar xvzf /tmp/ghostz-1.0.0.tar.gz -C /opt && \
rm -rf /tmp/ghostz-1.0.0.tar.gz
WORKDIR /opt/ghostz-1.0.0
@metaVariable
metaVariable / Dockerfile_MEGADOCK-GPU-CUDA9
Last active March 28, 2018 06:27
MEGADOCK-GPU + CUDA9
FROM nvidia/cuda:9.0-devel
MAINTAINER Akiyama Laboratory, Tokyo Institute of Technology <megadock@bi.cs.titech.ac.jp>
RUN apt-get update
RUN apt-get install -y --no-install-recommends \
wget \
make \
g++