izahn

## This R script contains a simple screen scraping example,
## downloading the text of the articles in the CNN website
## rss feed.

library(RCurl)
library(XML)

options(stringsAsFactors = FALSE)

## get rss document

hofmannsven

MySQL

Getting started

• http://www.sqlteaching.com/
• https://www.codecademy.com/learn/learn-sql
• https://www.codecademy.com/catalog/language/sql

Related tutorials

• MySQL-CLI
• Analyzing Business Metrics

andradei

[
  // Key remaps

  // - a
  { "keys": ["alt + ' + a"], "command": "insert", "args": {"characters": "á"}},
  { "keys": ["alt + ` + a"], "command": "insert", "args": {"characters": "à"}},
  { "keys": ["alt + \" + a"], "command": "insert", "args": {"characters": "ä"}},
  { "keys": ["alt + ~ + a"], "command": "insert", "args": {"characters": "ã"}},
 
  // - A

hrbrmstr

library(ggplot2)
library(tidyr)

dat <- as.data.frame(matrix(rep(c(rep("A", 24), rep("B", 8)), 10), nrow=10, byrow=TRUE))
dat$y <- rownames(dat)

dat %>%
  gather(x, value, -y) %>%
  mutate(x=as.numeric(gsub("V", "", x))) -> dat

agrueneberg

How to match RPPA samples to their patients in The Cancer Genome Atlas (TCGA)

When I wrote the TCGA Toolbox and the TCGA.rppa module, one of biggest problems was to match samples and patients.

Both sample and patient files can be accessed through the Open Access HTTP Directory. For glioblastoma multiforme (gbm), the samples can be found in the gbm/cgcc/mdanderson.org/mda_rppa_core/protein_exp/mdanderson.org_GBM.MDA_RPPA_Core.Level_3.1.0.0/ directory, and the patients can be found [in the nationwidechildrens.org_clinical_patient_gbm.txt file in

stormwild

Conda Environment

Create and activate an environment

conda create -n python2 python=2.7 anaconda
source activate python2

Deactivate environment