Mia Champion miachamp

## lambda.step.functionBowtie.json
This is a demo for running simple sequence alignments using Bowtie.  Lambda step functions are used to execute and monitor AWS Batch job status and the outputs are copied to your bucket in S3.

1)	Build and commit a docker container to the ECR
a.	Follow the tutorial in this blog post by Dougal Ballantyne : https://aws.amazon.com/blogs/compute/creating-a-simple-fetch-and-run-aws-batch-job/
i.	Added steps :  Modify the Dockerfile so that it includes a line of code for wget:

FROM amazonlinux:latest

RUN yum -y install which unzip aws-cli
RUN yum -y install which unzip wget
	This is a demo for running simple sequence alignments using Bowtie. Lambda step functions are used to execute and monitor AWS Batch job status and the outputs are copied to your bucket in S3.

	1) Build and commit a docker container to the ECR
	a. Follow the tutorial in this blog post by Dougal Ballantyne : https://aws.amazon.com/blogs/compute/creating-a-simple-fetch-and-run-aws-batch-job/
	i. Added steps : Modify the Dockerfile so that it includes a line of code for wget:

	FROM amazonlinux:latest

	RUN yum -y install which unzip aws-cli
	RUN yum -y install which unzip wget