Built with blockbuilder.org
Last active
February 8, 2018 17:18
-
-
Save micha2jm/be4c5d91e9ec9d4cf35007caa90cbd06 to your computer and use it in GitHub Desktop.
Genome Browser
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| license: mit |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| <!DOCTYPE html> | |
| <head> | |
| <meta charset="utf-8"> | |
| <script src="https://d3js.org/d3.v4.min.js"></script> | |
| <style> | |
| body { margin:0;position:fixed;top:0;right:0;bottom:0;left:0; } | |
| </style> | |
| </head> | |
| <body> | |
| <script> | |
| // Feel free to change or delete any of the code you see in this editor! | |
| var svg = d3.select("body").append("svg") | |
| .attr("width", 2000) | |
| .attr("height", 500) | |
| var gene = [{"name":"1", "start":96, "size":80, "direction":"F" }, | |
| {"name":"2", "start":278, "size":127, "direction":"F"}, | |
| {"name":"3", "start":500, "size":150, "direction":"R"}, | |
| {"name":"4", "start":700, "size":90, "direction":"F"}]; | |
| var ruler_100 = []; | |
| var ruler_500 = []; | |
| var ruler_1000 = []; | |
| var numbers = d3.range(10000); | |
| for (i in numbers) { | |
| if (i % 1000 == 0) { | |
| ruler_1000.push(numbers[i]); | |
| } | |
| else if (i % 500 == 0){ | |
| ruler_500.push(numbers[i]); | |
| } | |
| else if (i % 100 == 0){ | |
| ruler_100.push(numbers[i]); | |
| } | |
| } | |
| // console.log("1000:", ruler_1000); | |
| // console.log("500:", ruler_500); | |
| // console.log("100:", ruler_100); | |
| //for .... | |
| // modulus | |
| //if modulus == 0 { | |
| // ruler_100.push(...) | |
| //} | |
| console.log(gene); | |
| svg.selectAll("rect") | |
| .data(gene) | |
| .enter() | |
| .append("rect") | |
| .attr("y", function (d) { | |
| if ( d.direction == "F") { | |
| return 100; | |
| } | |
| else { | |
| return 300; | |
| } | |
| }) | |
| .attr("x", function (d) { | |
| if ( d.direction == "F") { | |
| return -75; | |
| } | |
| else { | |
| return 960; | |
| } | |
| }) | |
| .attr("width", function (d) {return d.size;}) | |
| .attr("height", 50) | |
| .attr("fill", "black") | |
| .attr("opacity", 0) | |
| .transition() | |
| .duration(1000) | |
| .attr("opacity", 1) | |
| .delay(function (d, i) { return i * 1000;}) | |
| .attr("fill", function (d) { | |
| if ( d.direction == "F") { | |
| return "crimson"; | |
| } | |
| else { | |
| return "darkgray"; | |
| } | |
| }) | |
| .attr("x", function (d) { return d.start;}) | |
| svg.selectAll("text") | |
| .data(gene) | |
| .enter() | |
| .append("text") | |
| .attr("text-anchor","middle") | |
| .attr("alignment-baseline","middle") | |
| .attr("opacity", 0) | |
| .attr("fill", "white") | |
| .attr("x", function (d) { return (d.start + (d.size /2)) | |
| }) | |
| .attr("y", function (d) { | |
| if ( d.direction == "F") { | |
| return 125; | |
| } | |
| else { | |
| return 325; | |
| } | |
| }) | |
| .text(function (d) { return d.name}) | |
| .attr("font-size", 34) | |
| .attr("font-family", "Calibri") | |
| .transition() | |
| .duration(250 + (gene.lenth * 1000)) | |
| .delay(function (d, i) { return i * 1000;}) | |
| .attr("opacity", 1) | |
| ; | |
| ; | |
| svg.selectAll(".rect1000") | |
| .data(ruler_1000) | |
| .enter() | |
| .append("rect") | |
| .classed("rect1000", true) | |
| .attr("fill", "black") | |
| .attr("width", 2) | |
| .attr("height", 50) | |
| .attr("y", 200) | |
| .attr("x", function(d) {return d /10}); | |
| svg.selectAll(".rect500") | |
| .data(ruler_500) | |
| .enter() | |
| .append("rect") | |
| .classed("rect500", true) | |
| .attr("fill", "black") | |
| .attr("width", 1) | |
| .attr("height", 25) | |
| .attr("y", 200) | |
| .attr("x", function(d) {return d /10}); | |
| svg.selectAll(".rect100") | |
| .data(ruler_100) | |
| .enter() | |
| .append("rect") | |
| .classed("rect100", true) | |
| .attr("fill", "black") | |
| .attr("width", .4) | |
| .attr("height", 25) | |
| .attr("y", 225) | |
| .attr("x", function(d) {return d /10}); | |
| svg.selectAll(".rectaround") | |
| .append("rect") | |
| .classed("rectaround", true) | |
| .attr("fill","black") | |
| .attr("width",2000) | |
| .attr("height", 1) | |
| .attr("y",200) | |
| .attr("x", 0) | |
| //.attr("width", function (d) { return d.end - d.start; }) | |
| /* var line = [{"x1":0, "y1":200,}, | |
| {"x1":0, "y1":250,}]; | |
| console.log(line); | |
| svg.selectAll("rect") | |
| .data(line) | |
| .enter() | |
| .append("rect") | |
| .attr("y", function (d) { return d.y1;}) | |
| .attr("x", function (d) { return d.x1;}) | |
| .attr("height", 10) | |
| .attr("width", function (d) { return d.length;}) | |
| */ | |
| /*var flagfrance = [{"fill": "darkgreen", "x":100}, | |
| {"fill": "white", "x":300}, | |
| {"fill": "coral", "x":500}]; | |
| console.log(flagfrance); | |
| svg.selectAll("rect") | |
| .data(flagfrance) | |
| .enter() | |
| .append("rect") | |
| .attr("y", 100) | |
| .attr("x", function (d) { return d.x;}) | |
| .attr("width", 200) | |
| .attr("height", 400) | |
| .attr("fill", function (d) { return d.fill; }); | |
| svg.append("rect") | |
| .attr("height", 200) | |
| .attr("width", 100) | |
| .attr("x", 200) | |
| .attr("y", 50) | |
| .attr("fill", "blue"), | |
| svg.append("rect") | |
| .attr("height", 200) | |
| .attr("width", 100) | |
| .attr("x", 400) | |
| .attr("y", 50) | |
| .attr("fill", "red") | |
| */ | |
| </script> | |
| </body> |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment