Created
June 19, 2017 20:25
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| ```{r} | |
| library(lme4) | |
| null <- glm.nb(gene_l1_norm ~ 1, data = data) | |
| genome_null <- glm.nb(gene_l1_norm ~ biological_source_name, data = data) | |
| n_misassemblies <- glm.nb(gene_l1_norm ~ n_misassemblies, data = data) | |
| n_misassemblies_genome <- glmer.nb(gene_l1_norm ~ n_misassemblies + (1|biological_source_name), data = data) | |
| nas50 <- glm.nb(gene_l1_norm ~ nas50, data = data) | |
| nas50_genome <- glmer.nb(gene_l1_norm ~ nas50 + (1|biological_source_name), data = data) | |
| nas50_n_misassemblies <- glm.nb(gene_l1_norm ~ nas50 + n_misassemblies, data = data) | |
| nas50_n_misassemblies_genome <- glmer.nb(gene_l1_norm ~ nas50 + n_misassemblies + (1|biological_source_name), data = data) | |
| nas50_n_misassemblies_int <- glm.nb(gene_l1_norm ~ nas50*n_misassemblies, data = data) | |
| nas50_n_misassemblies_int_genome <- glmer.nb(gene_l1_norm ~ nas50*n_misassemblies + (1|biological_source_name), data = data) | |
| BIC( | |
| null, | |
| genome_null, | |
| n_misassemblies, | |
| n_misassemblies_genome, | |
| nas50, | |
| nas50_genome, | |
| nas50_n_misassemblies, | |
| nas50_n_misassemblies_genome, | |
| nas50_n_misassemblies_int, | |
| nas50_n_misassemblies_int_genome) | |
| ``` |
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