fail_codes.json

[
    {
        "abandon_library": 0,
        "data_usable": 1,
        "id": "PMO00001",
        "jira_msg": "This library appears to be incorrectly scoped for the given project type. Please check the project parameters.",
        "lab_action": "No Lab Action",
        "segment_msg": "This library appears to be incorrectly scoped. Please check the project parameters.",
        "sow_item": "Needs PMO Attention",
        "type": "project"
    },
    {
        "abandon_library": 1,
        "data_usable": 0,
        "fail_group": "Sequencing",
        "fail_type": "gc divergence at end of reads",
        "id": "LIB00005",
        "jira_msg": "This seq unit has multiple sequencing and library issues and all data the library should be abandoned",
        "lab_action": "No Lab Action",
        "sow_item": "Needs PMO Attention",
        "type": "library"
    },
    {
        "abandon_library": 1,
        "data_usable": 0,
        "fail_group": "Library Group",
        "fail_type": "process cross contamination",
        "id": "LIB00001",
        "jira_msg": "This data is not usable as the source library appears to be contaminated. The SOW status has been set to 'Needs PMO Attention'. Please check the quality of the sample before requesting a new library.",
        "lab_action": "No Lab Action",
        "segment_msg": "This library appears to be contaminated. Please consider sample quality before requesting a new library.",
        "sow_item": "Needs PMO Attention",
        "type": "library"
    },
    {
        "abandon_library": 1,
        "data_usable": 1,
        "fail_group": "Library Group",
        "fail_type": "artifact contamination",
        "id": "LIB00003",
        "jira_msg": "This data did not meet TLA and the source library appears to have a large amount of 50bp artefact, the data is however usable. The SOW status has been set to 'Needs PMO Attention' because it is less than the TLA. A new library should be requested if additional data is needed.",
        "lab_action": "No Lab Action",
        "segment_msg": "This library appears to be poor quality where more than >10% of the data has been removed to 50bp artefact contamination. The SOW status has been set to 'Needs PMO Attention'.",
        "sow_item": "Needs PMO Attention",
        "type": "library"
    },
    {
        "abandon_library": 1,
        "data_usable": 1,
        "fail_group": "Library Group",
        "fail_type": "wrong insert size",
        "id": "LIB00004",
        "jira_msg": "This data did not meet TLA and the source library appears to have an incorrect insert size, The data is however usable. The SOW status has been set to 'Needs PMO Attention' because it is less than the TLA. A new library should be requested if additional data is needed.",
        "lab_action": "No Lab Action",
        "segment_msg": "This library appears to have an incorrect insert size. A new library should be requested if additional data is required.",
        "sow_item": "Needs PMO Attention",
        "type": "library"
    },
    {
        "abandon_library": 1,
        "data_usable": 1,
        "fail_group": "Library Group",
        "fail_type": "substandard_run_output",
        "id": "LIB00002",
        "jira_msg": "This data did not meet TLA and the source library appears to be of poor quality because of the amount of data removed during filtering, the data is however usable. The SOW status has been set to 'Needs PMO Attention' because it is less than the TLA. A new library should be requested if additional data is needed, however please check the quality of the sample before requesting a new library.",
        "lab_action": "No Lab Action",
        "segment_msg": "This library appears to be poor quality where more than >10% of the data has been removed during filtering. Please consider sample quality before requesting a new library.",
        "sow_item": "Needs PMO Attention",
        "type": "library"
    },
    {
        "abandon_library": 0,
        "data_usable": 0,
        "fail_group": "Sequencing",
        "fail_type": "gc divergence at end of reads",
        "id": "SEQ00002",
        "jira_msg": "This data shows GC/AT divergence and is therefore not usable. Additional sequencing of the existing library has been requested.",
        "lab_action": "Sequence Existing Library",
        "segment_msg": "This sequencing run shows nuclotide composition divergence at the ends of reads. Please sequence this library again.",
        "sow_item": "Needs Lab Work",
        "type": "sequencing"
    },
    {
        "abandon_library": 0,
        "data_usable": 0,
        "fail_group": "Sequencing",
        "fail_type": "substandard run output",
        "id": "SEQ00001",
        "jira_msg": "The read data is poor quality with unacceptable Q20 values. Additional sequencing of the existing library has been requested.",
        "lab_action": "Sequence Existing Library",
        "segment_msg": "The produced read quality fell below required Q20 levels. Please sequence this library again.",
        "sow_item": "Needs Lab Work",
        "type": "sequencing"
    },
    {
        "abandon_library": 0,
        "data_usable": 1,
        "fail_group": "",
        "fail_type": "",
        "id": "SEQ00003",
        "jira_msg": "The TLA for this seq unit was not met. The library however appears to be usable and without issues. Further sequencing of the existing library has been requested.",
        "lab_action": "Sequence Existing Library",
        "segment_msg": "Less than the required sequencing quantity was produced and TLA was not met. The data is usable and this library appears to have no other issues. Please use the existing library for further sequencing.",
        "sow_item": "Needs Lab Work",
        "type": "throughput"
    }
]