Qsub a python script

run_python_batchjob.sh

#!/bin/bash -l

# USAGE: bash run_python_batchjob.qsub [PYTHON FILE] 

# Make job script
if [ -z "$1" ]
then
        echo "ERROR: MUST PROVIDE INPUT PATH"
        echo "USAGE: bash run_python_batchjob.qsub [PYTHON FILE]"
        exit
else
        python_file=$1
fi

job_script=$(mktemp)

# Submit batch job
batch_job_text="#!/bin/bash -l\n\
#$ -P cometsfba\n\
#$ -j y\n\
#$ -m bae\n\
python $python_file
"

echo -e $batch_job_text > $job_script

cat $job_script

qsub $job_script

Update #$ -P cometsfba\n\ with your SCC project