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<html><head> |
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<meta charset="utf-8"> |
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<title>SnpEff example</title> |
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</head> |
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<body> |
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<a name="effects"> |
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<center> |
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<b> Number of effects by type and region </b> <p> |
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<table border="0"> |
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<tbody><tr> |
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<th> Type </th> |
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<th> Region </th> |
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</tr> |
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<tr> |
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<td> <table border="0"> |
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<thead> |
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<tr> |
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<th><b> Type (alphabetical order) </b></th> |
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<th> </th> |
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<th> Count </th> |
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<th> Percent </th> |
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</tr> |
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</thead> |
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<tbody><tr> |
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<td> <b> DOWNSTREAM </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#ff0000"> 45,227 </td> |
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<td class="numeric" bgcolor="#ff0000"> 31.475% </td> |
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</tr> |
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<tr> |
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<td> <b> INTERGENIC </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#d22c00"> 37,384 </td> |
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<td class="numeric" bgcolor="#d22c00"> 26.016% </td> |
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</tr> |
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<tr> |
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<td> <b> INTRON </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#23db00"> 6,307 </td> |
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<td class="numeric" bgcolor="#23db00"> 4.389% </td> |
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</tr> |
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<tr> |
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<td> <b> NON_SYNONYMOUS_CODING </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#26d800"> 6,800 </td> |
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<td class="numeric" bgcolor="#26d800"> 4.732% </td> |
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</tr> |
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<tr> |
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<td> <b> NON_SYNONYMOUS_START </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#00ff00"> 1 </td> |
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<td class="numeric" bgcolor="#00ff00"> 0.001% </td> |
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</tr> |
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<tr> |
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<td> <b> SPLICE_SITE_ACCEPTOR </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#00fe00"> 18 </td> |
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<td class="numeric" bgcolor="#00fe00"> 0.013% </td> |
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</tr> |
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<tr> |
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<td> <b> SPLICE_SITE_DONOR </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#00fe00"> 31 </td> |
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<td class="numeric" bgcolor="#00fe00"> 0.022% </td> |
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</tr> |
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<tr> |
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<td> <b> START_LOST </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#00ff00"> 1 </td> |
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<td class="numeric" bgcolor="#00ff00"> 0.001% </td> |
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</tr> |
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<tr> |
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<td> <b> STOP_GAINED </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#01fd00"> 355 </td> |
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<td class="numeric" bgcolor="#01fd00"> 0.247% </td> |
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</tr> |
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<tr> |
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<td> <b> STOP_LOST </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#01fd00"> 295 </td> |
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<td class="numeric" bgcolor="#01fd00"> 0.205% </td> |
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</tr> |
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<tr> |
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<td> <b> SYNONYMOUS_CODING </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#14ea00"> 3,619 </td> |
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<td class="numeric" bgcolor="#14ea00"> 2.519% </td> |
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</tr> |
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<tr> |
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<td> <b> SYNONYMOUS_STOP </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#00fe00"> 63 </td> |
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<td class="numeric" bgcolor="#00fe00"> 0.044% </td> |
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</tr> |
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<tr> |
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<td> <b> UPSTREAM </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#f50900"> 43,593 </td> |
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<td class="numeric" bgcolor="#f50900"> 30.337% </td> |
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</tr> |
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</tbody></table><br> |
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</td> |
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<td> <table border="0"> |
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<thead> |
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<tr> |
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<th><b> Type (alphabetical order) </b></th> |
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<th> </th> |
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<th> Count </th> |
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<th> Percent </th> |
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</tr> |
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</thead> |
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<tbody><tr> |
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<td> <b> DOWNSTREAM </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#ff0000"> 45,227 </td> |
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<td class="numeric" bgcolor="#ff0000"> 31.475% </td> |
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</tr> |
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<tr> |
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<td> <b> EXON </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#3ec000"> 11,134 </td> |
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<td class="numeric" bgcolor="#3ec000"> 7.748% </td> |
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</tr> |
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<tr> |
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<td> <b> INTERGENIC </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#d22c00"> 37,384 </td> |
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<td class="numeric" bgcolor="#d22c00"> 26.016% </td> |
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</tr> |
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<tr> |
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<td> <b> INTRON </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#23db00"> 6,307 </td> |
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<td class="numeric" bgcolor="#23db00"> 4.389% </td> |
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</tr> |
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<tr> |
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<td> <b> SPLICE_SITE_ACCEPTOR </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#00ff00"> 18 </td> |
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<td class="numeric" bgcolor="#00ff00"> 0.013% </td> |
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</tr> |
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<tr> |
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<td> <b> SPLICE_SITE_DONOR </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#00fe00"> 31 </td> |
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<td class="numeric" bgcolor="#00fe00"> 0.022% </td> |
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</tr> |
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<tr> |
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<td> <b> UPSTREAM </b> </td> |
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<th> </th> |
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<td class="numeric" bgcolor="#f50900"> 43,593 </td> |
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<td class="numeric" bgcolor="#f50900"> 30.337% </td> |
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</tr> |
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</tbody></table><br> |
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</td> |
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</tr> |
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</tbody></table> |
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</p> |
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</a> |
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</body></html> |