Skip to content

Instantly share code, notes, and snippets.

@mictadlo

mictadlo/chip-seq

Last active Aug 29, 2015
Embed
What would you like to do?
#Chip-Seq
# These tools returned many hits
* ssp
* Macs
* homer
* meme
# I could not find a Galaxy for this one:
* PeakAnalyzer
# I choosed for few other tools the repository, but I am not quite sure whether they are correct.
RUN install-repository "--url http://toolshed.g2.bx.psu.edu/ -o devteam --name sicer --panel-section-name ‘NGS: Peak Calling’”
RUN install-repository "--url http://toolshed.g2.bx.psu.edu/ -o devteam --name ccta --panel-section-name ‘NGS: Peak Calling’”
RUN install-repository "--url http://toolshed.g2.bx.psu.edu/ -o devteam --name sicer --panel-section-name ‘NGS: Peak Calling’”
RUN install-repository "--url http://toolshed.g2.bx.psu.edu/ -o modencode-dcc --name idr_package --panel-section-name ‘NGS: Peak Calling’”
RUN install-repository "--url http://toolshed.g2.bx.psu.edu/ -o pjbriggs --name ceas --panel-section-name ‘NGS: Peak Calling’”
RUN install-repository "--url http://toolshed.g2.bx.psu.edu/ -o pjbriggs --name weeder2 --panel-section-name ‘NGS: Peak Calling’”
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment