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Created October 17, 2017 08:02
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EasyBuild test report for easyconfigs PR #5219
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easybuild_test_report_easyconfigs_pr5219_20170217-UTC-08-02-51.md

Test report for easybuilders/easybuild-easyconfigs#5219

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS SAMtools-1.6-intel-2017b.eb

Time info

  • start: Tue, 17 Oct 2017 08:01:34 +0000 (UTC)
  • end: Tue, 17 Oct 2017 08:02:51 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 3.4.0
  • easybuild-easyblocks version: 3.4.0
  • command line:
eb --from-pr 5219 --parallel=1 -f -r --upload-test-report
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/dev/shm'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-debug
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fixed-installdir-naming-scheme
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-module-only
--disable-new-pr
--disable-package
--disable-pretend
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-full-config
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--force
--from-pr='5219'
--github-user='migueldiascosta'
--ignore-dirs='.git,.svn'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--installpath='/opt/apps/util/easybuild'
--job-backend='GC3Pie'
--job-max-walltime='24'
--job-output-dir='/gpfs0/shared/home/easybuild'
--job-polling-interval='30.0'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--max-fail-ratio-adjust-permissions='0.5'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,phys,system,toolchain,tools,vis'
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/opt/apps/util/easybuild/packages'
--parallel='1'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pr-target-repo='easybuild-easyconfigs'
--prefix='/opt/apps/util/easybuild'
--repository='FileRepository'
--repositorypath='/opt/apps/util/easybuild/ebfiles_repo'
--robot-paths=''
--robot='/opt/apps/util/easybuild/software/EasyBuild/3.4.0/lib/python2.6/site-packages/easybuild_easyconfigs-3.4.0-py2.6.egg/easybuild/easyconfigs'
--sourcepath='/opt/apps/util/easybuild/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'

System info

  • core count: 24
  • cpu model: Intel(R) Xeon(R) CPU E5-2640 0 @ 2.50GHz
  • cpu speed: 2501.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.4.7 20120313 (Red Hat 4.4.7-18) (GCC) ;
  • glibc version: 2.12
  • hostname: grc-cluster1
  • os name: centos
  • os type: Linux
  • os version: 6.9
  • platform name: x86_64-unknown-linux
  • python version: 2.6.6 (r266:84292, Aug 18 2016, 15:13:37) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-17)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python
  • total memory: 32084

List of loaded modules

  • EasyBuild/3.4.0

Environment

BASH_ENV = /opt/apps/util/lmod/lmod/init/bash
BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@");
 [ $? = 0 ] && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
BINARY_TYPE_HPC = 
CATALINA_TMPDIR = /opt/pcm/web-portal/gui/work
CATALINA_WORKDIR = /opt/pcm/web-portal/gui/work
CCACHE_HASHDIR = 
CVS_RSH = ssh
DISPLAY = localhost:14.0
EASYBUILD_BUILDPATH = /dev/shm
EASYBUILD_GITHUB_USER = migueldiascosta
EASYBUILD_MODULES_TOOL = Lmod
EASYBUILD_PREFIX = /opt/apps/util/easybuild
EBDEVELEASYBUILD = /opt/apps/util/easybuild/software/EasyBuild/3.4.0/easybuild/EasyBuild-3.4.0-easybuild-devel
EBROOTEASYBUILD = /opt/apps/util/easybuild/software/EasyBuild/3.4.0
EBVERSIONEASYBUILD = 3.4.0
EB_GLOBAL_PREFIX = /opt/apps/util/easybuild
EGO_BINDIR = /shared/ibm/platform_lsf/9.1/linux2.6-glibc2.3-x86_64/bin
EGO_CONFDIR = /shared/ibm/platform_lsf/conf/ego/phpc_cluster/kernel
EGO_ESRVDIR = /shared/ibm/platform_lsf/conf/ego/phpc_cluster/eservice
EGO_LIBDIR = /shared/ibm/platform_lsf/9.1/linux2.6-glibc2.3-x86_64/lib
EGO_LOCAL_CONFDIR = /shared/ibm/platform_lsf/conf/ego/phpc_cluster/kernel
EGO_SERVERDIR = /shared/ibm/platform_lsf/9.1/linux2.6-glibc2.3-x86_64/etc
EGO_TOP = /shared/ibm/platform_lsf
EGO_VERSION = 1.2
FANCYLOGGER_IGNORE_MPI4PY = 1
GUI_CONFDIR = /opt/pcm/web-portal/gui/conf
GUI_LIBDIR = /opt/pcm/web-portal/gui/3.0/lib/linux2.6-glibc2.3-x86_64
GUI_LOGDIR = /opt/pcm/web-portal/gui/logs
GUI_VERSION = 3.0
G_BROKEN_FILENAMES = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /home/easybuild
HOSTNAME = grc-cluster1
HPC_VERSION = 3.0
INTEL_LICENSE_FILE = /opt/intel/licenses/l_LNBWL4T7.lic
I_MPI_LSF_USE_COLLECTIVE_LAUNCH = 1
JAVA_HOME = /opt/pcm/web-portal/perf/jre/linux-x86_64
LANG = en_US.UTF-8
LD_LIBRARY_PATH = /shared/ibm/platform_lsf/9.1/linux2.6-glibc2.3-x86_64/lib
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LICENSE_FILE = /opt/pcm/web-portal/perf/conf/license.dat
LMOD_CMD = /opt/apps/util/lmod/6.6/libexec/lmod
LMOD_COLORIZE = yes
LMOD_DEFAULT_MODULEPATH = /opt/apps/util/easybuild/modules/all:/opt/apps/util/modulefiles/Linux:/opt/apps/util/modulefiles/Core:/opt/apps/util/lmod/lmod/modulefiles/Core
LMOD_DIR = /opt/apps/util/lmod/6.6/libexec
LMOD_FULL_SETTARG_SUPPORT = no
LMOD_PKG = /opt/apps/util/lmod/6.6
LMOD_PREPEND_BLOCK = normal
LMOD_SETTARG_CMD = :
LMOD_VERSION = 6.6
LMOD_arch = x86_64
LMOD_sys = Linux
LOADEDMODULES = EasyBuild/3.4.0
LOGNAME = easybuild
LSF_BINDIR = /shared/ibm/platform_lsf/9.1/linux2.6-glibc2.3-x86_64/bin
LSF_ENVDIR = /shared/ibm/platform_lsf/conf
LSF_LIBDIR = /shared/ibm/platform_lsf/9.1/linux2.6-glibc2.3-x86_64/lib
LSF_SERVERDIR = /shared/ibm/platform_lsf/9.1/linux2.6-glibc2.3-x86_64/etc
LSF_VERSION = 9.1
LS_COLORS = rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
MAIL = /var/spool/mail/easybuild
MALLOC_ARENA_MAX = 2
MANPATH = /opt/xcat/share/man:/opt/apps/util/lmod/lmod/share/man:/shared/ibm/platform_lsf/9.1/man:/opt/xcat/share/man::/opt/pcm/man
MATHEMATICA_HOME = /opt/apps/mathematica/10.2
MODULEPATH = /opt/apps/util/easybuild/modules/all:/opt/apps/util/modulefiles/Linux:/opt/apps/util/modulefiles/Core:/opt/apps/util/lmod/lmod/modulefiles/Core
MODULEPATH_ROOT = /opt/apps/util/modulefiles
MODULESHOME = /opt/apps/util/lmod/6.6
MPLBACKEND = Agg
OS_TYPE = linux-x86_64
PATH = /opt/apps/util/easybuild/software/VNL_ATK/2017.b1/bin:/opt/apps/util/easybuild/software/VNL_ATK/2017.b1/bin:/opt/apps/util/easybuild/software/VNL_ATK/2017.b1/bin:/opt/apps/util/easybuild/software/VNL_ATK/2017.b1/bin:/opt/xcat/bin:/opt/xcat/sbin:/opt/xcat/share/xcat/tools:/opt/apps/util/easybuild/software/EasyBuild/3.4.0/bin:/usr/lib64/qt-3.3/bin:/opt/pcm/bin:/opt/pcm/sbin:/opt/pcm/web-portal/gui/3.0/bin:/opt/pcm/web-portal/perf/1.2/bin:/usr/bin:/bin:/usr/local/bin:/local/bin:/sbin:/usr/sbin:/usr/ucb:/usr/sbin:/usr/bsd:/shared/ibm/platform_lsf/9.1/linux2.6-glibc2.3-x86_64/etc:/shared/ibm/platform_lsf/9.1/linux2.6-glibc2.3-x86_64/bin:/opt/xcat/bin:/opt/xcat/sbin:/opt/xcat/share/xcat/tools:/usr/lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lpp/mmfs/bin:/opt/ibutils/bin:/opt/apps/util/easybuild/software/VNL_ATK/2015.0/bin:/opt/apps/util/easybuild/software/VNL_ATK/2015.0/license:/home/easybuild/bin:/opt/apps/util/easybuild/software/VNL_ATK/2015.0/bin:/opt/apps/util/easybuild/software/VNL_ATK/2015.0/license
PCM_EGO_TOP = /opt/pcm/ego
PCM_GUI_TOP = /opt/pcm/web-portal
PCM_LOGDIR = /opt/pcm/log
PCM_LOGFILE = /opt/pcm/log/pcm.log
PCM_LOGLEVEL = INFO
PCM_MAXLOGNUM = 10
PCM_MAXLOGSIZE = 10485760
PCM_ROOT = /opt/pcm
PCM_TMP = /tmp
PERF_CONFDIR = /opt/pcm/web-portal/perf/conf
PERF_DATADIR = /opt/pcm/web-portal/perf/data
PERF_ENV = -DPERF_TOP=/opt/pcm/web-portal/perf -DPERF_CONFDIR=/opt/pcm/web-portal/perf/conf -DPERF_WORKDIR=/opt/pcm/web-portal/perf/work -DPERF_LOGDIR=/opt/pcm/web-portal/perf/logs -DPERF_DATADIR=/opt/pcm/web-portal/perf/data
PERF_ETCDIR = /opt/pcm/web-portal/perf/1.2/etc
PERF_INDEPENDENCY = true
PERF_LIB = /opt/pcm/web-portal/perf/1.2/linux-x86_64/lib:/opt/pcm/web-portal/perf/hpc/3.0/linux-x86_64/lib:/opt/pcm/web-portal/perf/ego/1.2/linux-x86_64/lib:/opt/pcm/web-portal/perf/view/1.2/linux-x86_64/lib:/opt/pcm/web-portal/perf/lsf/9.1/linux-x86_64/lib
PERF_LIB_TYPE = linux-x86_64
PERF_LOGDIR = /opt/pcm/web-portal/perf/logs
PERF_TOP = /opt/pcm/web-portal/perf
PERF_VERSION = 1.2
PERF_WORKDIR = /opt/pcm/web-portal/perf/work
PERL_BADLANG = 0
PI_CONFDIR = /opt/pcm/web-portal/perf/conf
PI_LOGDIR = /opt/pcm/web-portal/perf/logs
PI_ROOT = /opt/pcm/web-portal/perf
PI_TOP = /opt/pcm/web-portal/perf
PI_WORKDIR = /opt/pcm/web-portal/perf/work
PMC_TOP = /opt/pcm/web-portal
PRIMITIVE_ROOT = /opt/primitive
PWD = /home/easybuild
PYTHONOPTIMIZE = 1
PYTHONPATH = /opt/apps/util/easybuild/software/EasyBuild/3.4.0/lib/python2.6/site-packages:/opt/primitive/lib/python/site-packages:/opt/pcm/lib/python::
QTDIR = /usr/lib64/qt-3.3
QTINC = /usr/lib64/qt-3.3/include
QTLIB = /usr/lib64/qt-3.3/lib
RES_AGENT_TOP = /opt/pcm/web-portal/perf
RES_ALERTDIR = /opt/pcm/web-portal/perf/../gui/conf
RES_CONFDIR = /opt/pcm/web-portal/perf/conf
RES_LOGDIR = /opt/pcm/web-portal/perf/logs
RES_PLCDIR = /opt/pcm/web-portal/perf/conf
RES_PTCDIR = /opt/pcm/web-portal/perf/conf
RES_SERVER_TOP = /opt/pcm/web-portal/perf/../gui
RES_WORKDIR = /opt/pcm/web-portal/perf/work
SHELL = /bin/bash
SHLVL = 2
SSH_ASKPASS = /usr/libexec/openssh/gnome-ssh-askpass
TERM = xterm-256color
USER = easybuild
VIEW_VERSION = 1.2
XCATROOT = /opt/xcat
_ = /usr/bin/python2
_LMFILES_ = /opt/apps/util/easybuild/modules/all/EasyBuild/3.4.0.lua
_ModuleTable001_ = 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
_ModuleTable002_ = 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
_ModuleTable003_ = L3V0aWwvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLFsidmVyc2lvbiJdPTIsfQ==
_ModuleTable_Sz_ = 3
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